Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004451

Physical Location & Seq

Genomic Coordinates Reverse (-)

31836779 .. 31837321

Gene Structure 543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0290600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGTCAATTCCTCTTCCCCTTCAGCAGCCTTTCTGAGGGAGCAATTCTTTTCCTCCGACCTGCGTCTATTGCAGTATTATCAGCGTTCCTCTGTTTGGCCAGGCTTAAAGAAATTATGGGATTCCTTCTATGCGTCTGTTCAATGGTTGGTGGGAGATGGTAGTAGAATTTCTTTTTGTTCAGACAATTGGTTGGGTACTCCAATCTCATCCATGCATCGAATCACGCCAGTGGTGCGGTCCCTTATGCCTGTCAAGGTCAGTGATTTCATTAGGGACAAGCAATGGGCAATTCCTTCTACCTTTAATTTTTTCTTCCCAGACCTTGCTTCAAGAATTTCTAAAGTGGTGTTGCCTCTGGAGAATGGGGTGGACCAGGTTATTTGGCCACATAATGCTGCTGGGGTTTTAACTTCAAAGGAAGCTTTTGATTTTATTTCACCCCCTAAGCCGAAGGTAGACTGGTGCAAGTTGATTTGGAATAAAGCTTTGCAACCGCGAAAAAGCTTGGTGGCTTGGAAGGTTTTAATAAGCGGATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0008152 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00430 ko01100 map00430 map01100

Pfam Domains

Protein Families

PCO_ADO

Protein Analysis

180

Amino Acids

20.54

Weight (kDa)

9.73

Isoelectric Point (pI)

48.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42670 AT2G42670 AT2G42670 AT3G58670 AT3G58670 AT3G58670 AT3G58670
fragaria_vesca	FvH4_6g27560 FvH4_6g27560 FvH4_6g27560
malus_domestica	MD09G1236500.v1.1 MD17G1266100.v1.1
prunus_persica	Prupe.3G116600_v2.0.a1 Prupe.3G116600_v2.0.a1 Prupe.3G116600_v2.0.a1 Prupe.3G116600_v2.0.a1 Prupe.3G116600_v2.0.a1 Prupe.3G116600_v2.0.a1
pyrus_communis	pycom09g15490 pycom17g26570
rosa_chinensis	RchiOBHm_Chr2g0129981
rosa_laevigata	RLG00000019117
rosa_multiflora	Rmu_sc0005625.1_g000009
rosa_roxburghii	Rroxscaffold_2G00114180
rosa_rugosa	Rorug02G0290500 Rorug02G0290600 Rorug02G0290700
rosa_samantha	Rh2AG341900 Rh2BG350100 Rh2CG329300 Rh2DG368200
rosa_wichuraiana	Rw2G027720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	69
AccI	GTMKAC	1 cut(s)	459
AccII	CGCG	1 cut(s)	499
AciI	CCGC	3 cut(s)	238, 497, 534
AcoI	YGGCCR	2 cut(s)	98, 386
AcsI	RAATTY	2 cut(s)	168, 336
AcuI	CTGAAG	1 cut(s)	6
AfaI	GTAC	1 cut(s)	199
AfiI	CCNNNNNNNGG	2 cut(s)	36, 96
AgsI	TTSAA	3 cut(s)	143, 333, 417
AjnI	CCWGG	2 cut(s)	100, 375
AleI	CACNNNNGTG	1 cut(s)	230
AluBI	AGCT	3 cut(s)	425, 488, 507
AluI	AGCT	3 cut(s)	425, 488, 507
AoxI	GGCC	2 cut(s)	98, 386
ApeKI	GCWGC	2 cut(s)	26, 398
ApoI	RAATTY	2 cut(s)	168, 336
AspS9I	GGNCC	2 cut(s)	240, 373
AsuHPI	GGTGA	1 cut(s)	432
AvaII	GGWCC	2 cut(s)	240, 373
BalI	TGGCCA	2 cut(s)	100, 388
BbvI	GCAGC	2 cut(s)	38, 385
BccI	CCATC	1 cut(s)	152
BciT130I	CCWGG	2 cut(s)	102, 377
BfuAI	ACCTGC	1 cut(s)	69
BisI	GCNGC	2 cut(s)	27, 399
BlsI	GCNGC	2 cut(s)	28, 400
Bme1390I	CCNGG	2 cut(s)	102, 377
Bme18I	GGWCC	2 cut(s)	240, 373
BmgT120I	GGNCC	2 cut(s)	240, 373
BmiI	GGNNCC	1 cut(s)	242
BmrFI	CCNGG	2 cut(s)	102, 377
BmsI	GCATC	1 cut(s)	226
BoxI	GACNNNNGTC	1 cut(s)	63
BpmI	CTGGAG	1 cut(s)	380
Bpu10I	CCTNAGC	1 cut(s)	447
Bsc4I	CCNNNNNNNGG	2 cut(s)	36, 96
Bse1I	ACTGG	2 cut(s)	230, 467
Bse3DI	GCAATG	1 cut(s)	290
BseBI	CCWGG	2 cut(s)	102, 377
BseGI	GGATG	1 cut(s)	209
BseLI	CCNNNNNNNGG	2 cut(s)	36, 96
BseMI	GCAATG	1 cut(s)	290
BseMII	CTCAG	1 cut(s)	26
BseNI	ACTGG	2 cut(s)	230, 467
BseXI	GCAGC	2 cut(s)	38, 385
BseYI	CCCAGC	1 cut(s)	401
Bsh1236I	CGCG	1 cut(s)	499
BshFI	GGCC	2 cut(s)	100, 388
BslFI	GGGAC	2 cut(s)	226, 290
BslI	CCNNNNNNNGG	2 cut(s)	36, 96
BsmFI	GGGAC	2 cut(s)	226, 290
BsnI	GGCC	2 cut(s)	100, 388
BspACI	CCGC	3 cut(s)	238, 497, 534
BspANI	GGCC	2 cut(s)	100, 388
BspCNI	CTCAG	1 cut(s)	27
BspFNI	CGCG	1 cut(s)	499
BspLI	GGNNCC	1 cut(s)	242
BspMI	ACCTGC	1 cut(s)	69
BsrDI	GCAATG	1 cut(s)	290
BsrI	ACTGG	2 cut(s)	230, 467
Bst2UI	CCWGG	2 cut(s)	102, 377
Bst6I	CTCTTC	1 cut(s)	19
BstDEI	CTNAG	2 cut(s)	35, 447
BstENI	CCTNNNNNAGG	1 cut(s)	34
BstF5I	GGATG	1 cut(s)	209
BstFNI	CGCG	1 cut(s)	499
BstMWI	GCNNNNNNNGC	2 cut(s)	70, 235
BstNI	CCWGG	2 cut(s)	102, 377
BstPAI	GACNNNNGTC	1 cut(s)	63
BstSCI	CCNGG	2 cut(s)	100, 375
BstUI	CGCG	1 cut(s)	499
BstV1I	GCAGC	2 cut(s)	38, 385
BsuRI	GGCC	2 cut(s)	100, 388
BtsCI	GGATG	1 cut(s)	209
BtsIMutI	CAGTG	2 cut(s)	237, 268
BveI	ACCTGC	1 cut(s)	69
Cfr13I	GGNCC	2 cut(s)	240, 373
CseI	GACGC	2 cut(s)	53, 123
CsiI	ACCWGGT	1 cut(s)	375
Csp6I	GTAC	1 cut(s)	198
CviAII	CATG	1 cut(s)	214
CviJI	RGCY	9 cut(s)	29, 100, 105, 388, 425, 451, 488, 507, 515
CviKI_1	RGCY	9 cut(s)	29, 100, 105, 388, 425, 451, 488, 507, 515
CviQI	GTAC	1 cut(s)	198
DdeI	CTNAG	2 cut(s)	35, 447
EaeI	YGGCCR	2 cut(s)	98, 386
Eam1104I	CTCTTC	1 cut(s)	19
EarI	CTCTTC	1 cut(s)	19
Eco47I	GGWCC	2 cut(s)	240, 373
Eco57I	CTGAAG	1 cut(s)	6
EcoNI	CCTNNNNNAGG	1 cut(s)	34
EcoRII	CCWGG	2 cut(s)	100, 375
EcoT22I	ATGCAT	1 cut(s)	219
FaeI	CATG	1 cut(s)	217
FaiI	YATR	5 cut(s)	118, 132, 215, 248, 393
FaqI	GGGAC	2 cut(s)	226, 290
FatI	CATG	1 cut(s)	213
FblI	GTMKAC	1 cut(s)	459
Fnu4HI	GCNGC	2 cut(s)	27, 399
FokI	GGATG	1 cut(s)	196
Fsp4HI	GCNGC	2 cut(s)	27, 399
GluI	GCNGC	2 cut(s)	27, 399
GsaI	CCCAGC	1 cut(s)	405
GsuI	CTGGAG	1 cut(s)	380
HaeIII	GGCC	2 cut(s)	100, 388
HgaI	GACGC	2 cut(s)	53, 123
Hin1II	CATG	1 cut(s)	217
HindIII	AAGCTT	3 cut(s)	423, 486, 505
HinfI	GANTC	2 cut(s)	122, 222
HphI	GGTGA	1 cut(s)	432
Hpy166II	GTNNAC	2 cut(s)	373, 460
Hpy188I	TCNGA	3 cut(s)	36, 58, 184
Hpy188III	TCNNGA	2 cut(s)	333, 359
Hpy8I	GTNNAC	2 cut(s)	373, 460
HpyAV	CCTTC	5 cut(s)	30, 136, 306, 448, 514
HpyCH4V	TGCA	4 cut(s)	73, 217, 468, 493
HpyF10VI	GCNNNNNNNGC	2 cut(s)	70, 235
HpyF3I	CTNAG	2 cut(s)	35, 447
Hsp92II	CATG	1 cut(s)	217
LmnI	GCTCC	1 cut(s)	40
Lsp1109I	GCAGC	2 cut(s)	38, 385
LweI	GCATC	1 cut(s)	226
MabI	ACCWGGT	1 cut(s)	375
MboII	GAAGA	2 cut(s)	6, 307
MfeI	CAATTG	1 cut(s)	187
MlsI	TGGCCA	2 cut(s)	100, 388
MluCI	AATT	8 cut(s)	7, 44, 113, 168, 187, 291, 307, 336
MluNI	TGGCCA	2 cut(s)	100, 388
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	5 cut(s)	22, 30, 64, 100, 366
Mox20I	TGGCCA	2 cut(s)	100, 388
Mph1103I	ATGCAT	1 cut(s)	219
MscI	TGGCCA	2 cut(s)	100, 388
MseI	TTAA	5 cut(s)	107, 306, 410, 527, 541
MslI	CAYNNNNRTG	1 cut(s)	230
Msp20I	TGGCCA	2 cut(s)	100, 388
MspR9I	CCNGG	2 cut(s)	102, 377
MunI	CAATTG	1 cut(s)	187
MvaI	CCWGG	2 cut(s)	102, 377
MvnI	CGCG	1 cut(s)	499
MwoI	GCNNNNNNNGC	2 cut(s)	70, 235
NlaIII	CATG	1 cut(s)	217
NlaIV	GGNNCC	1 cut(s)	242
NsiI	ATGCAT	1 cut(s)	219
OliI	CACNNNNGTG	1 cut(s)	230
PfeI	GAWTC	2 cut(s)	122, 222
PkrI	GCNGC	2 cut(s)	28, 400
PshAI	GACNNNNGTC	1 cut(s)	63
Psp6I	CCWGG	2 cut(s)	100, 375
PspFI	CCCAGC	1 cut(s)	401
PspGI	CCWGG	2 cut(s)	100, 375
PspN4I	GGNNCC	1 cut(s)	242
PspPI	GGNCC	2 cut(s)	240, 373
RsaI	GTAC	1 cut(s)	199
RsaNI	GTAC	1 cut(s)	198
RseI	CAYNNNNRTG	1 cut(s)	230
SaqAI	TTAA	5 cut(s)	107, 306, 410, 527, 541
SatI	GCNGC	2 cut(s)	27, 399
Sau96I	GGNCC	2 cut(s)	240, 373
ScrFI	CCNGG	2 cut(s)	102, 377
SexAI	ACCWGGT	1 cut(s)	375
SfaNI	GCATC	1 cut(s)	226
SinI	GGWCC	2 cut(s)	240, 373
SmiMI	CAYNNNNRTG	1 cut(s)	230
Sse9I	AATT	8 cut(s)	7, 44, 113, 168, 187, 291, 307, 336
SsiI	CCGC	3 cut(s)	238, 497, 534
StyD4I	CCNGG	2 cut(s)	100, 375
TaqI	TCGA	1 cut(s)	220
TasI	AATT	8 cut(s)	7, 44, 113, 168, 187, 291, 307, 336
TfiI	GAWTC	2 cut(s)	122, 222
Tru1I	TTAA	5 cut(s)	107, 306, 410, 527, 541
Tru9I	TTAA	5 cut(s)	107, 306, 410, 527, 541
TscAI	CASTG	2 cut(s)	237, 268
TseI	GCWGC	2 cut(s)	26, 398
TspDTI	ATGAA	1 cut(s)	259
TspRI	CASTG	2 cut(s)	237, 268
VpaK11BI	GGWCC	2 cut(s)	240, 373
XagI	CCTNNNNNAGG	1 cut(s)	34
XapI	RAATTY	2 cut(s)	168, 336
XmiI	GTMKAC	1 cut(s)	459
Zsp2I	ATGCAT	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.