Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004451

Physical Location & Seq

Genomic Coordinates Forward (+)

31838495 .. 31840246

Gene Structure 1752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0290700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1752 bp

ATGGCAGCAATTCTGGCAATGAATTGTGTTGACGATCATGGCAGGTATTTAGGGCTACCCCTGCGTGTTTGGAGGTCCAAAACTACTATTTTTGAGTATATAAAAGAGAAGCTCACCAAGAAGTTGATAGGTTGGAAATCAAAGATTCTTAGCTGTGCAGGTAGAGAGGTCTTAATTAAAGCTGTTGCACAGACAATGCCTTTGTATACCATGAACTGTTATTTGTTGCCTAAGGGATTGTGTGATGACATACATCAGCTATGTGCTTCTTTCTTCTGGGGAGATACAGATGAAAGAAAGAAGATTCATTGGCGTAGTTGGGAGAAAATGTGTCTCACAAAGCAAGAAGGGGGAATGGGTTTTAAAAATATTTATGCCTATAATCTTGCAATGTTGGCTAAGCAGGGATGGAGGCTTGTTTCCAATCCACAGTCACTTATAGCGCAGCTTTACAAAGCTAGATATTTTCCTCATTGTTCTTTTTGGGAAGCTGAGTTGGGGGACTCCCCGTCCTTCTCTTGGAGGAGCATTCTTAGCGGCAGACCTGTCCTTGCAGCGGGTGTAAAATGGAGAATAGGTGATGGGGTGCAGGTTAATATTTGGAGGGATAAATGGGTTCCAAATTGTGCACAATATCTAATACAGAAGCCACAACACACAGAGTTTGAGTTTGTTGCTGATCTAATTGATAATCAGAGCCGTGCATGGATTCCGACAACTATCAATTCACTTTTCAGACCGGAAGTTGCTGCAAACATTCTTGCCATTCCTTTGAGCAGACGTGTGTTGCCAGATAAGCTTCGGTGGAGTCCTGAAAAGAGAGGCAATTTTTCTGTGAAAACTGCATATTGGATTGCCAGAGAGAAAGTTCTTAAGAATGTATTAACTACTACTTCTAATGGTAATCCCTACAAAGAGCTTTGGAACAGACTTTGGCGGGCCAGAGTTCCAACTAAGGTGCAAATATGTGTATGGAGGGCTGCACAAAATCTGTTACCTACAAGAGAGAGGTTGACGACCAAGGGTTATGATGGTGATACTAGCTACTTGTTATGCTCACACCGGTTGGAGGACAATGCTCATCTTTTTTGTAAGTGTCCAATTGCTGCTGAATTGCTATCTGCACCTCCTTTATCTCTTCAGAACACTTTATTGCCTATGATTAATTTTAAAGAATGGTTGTTGGACTGTGCGACTAATCTCAAAGCTGAGGTCTTTGAGAAACTTATGATGATTATATGGGCACTATGGAGAAACAGAAATAGTATGCTTTGGGAGAATGCTTCCCAAACTACCCAACACATGTTACTGTTTACTATGGCCTGGCTAGAGGATTTTCAGCGTGCCAGAACTACAATAGCTCCCACCGTGCAGCACAACAAGCTGAGATGGAAACCGGCTGATCTTGGACAATGCAAATTAAATGTTGATGGAGCTTTTGTGCCTCATTTGACGAAAGGAGGTCTAGGGGGTGTTCTAAGAAATTCTAGTGGACATGTCCAAGCTGCTTTTGCTCACACTGTTCATCATGTTGGATCTCTAAAGCAGGTAGAACTTCTTGCTATTAGGAAGGGGTTGGATTATGCAAAGTCTTTACAACTGCAAAATGTCACAATTGAGAGTGACTGTCTTGAAGCAGTGCAAGAGATTTCATGCAGTGATCATGACCTAACTGAGTTTGGAGCTATTTTGGATGACATACATGAACTTATGACCAGTATTCATGGAGTGCATATTCTACATGCACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0008152 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00430 ko01100 map00430 map01100

Pfam Domains

Protein Families

PCO_ADO

Protein Analysis

583

Amino Acids

66.69

Weight (kDa)

9.2

Isoelectric Point (pI)

39.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	277 - 371	8e-15	zinc-binding in reverse transcriptase
RVT_3	PF13456	475 - 582	1.9e-16	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42670 AT2G42670 AT2G42670 AT3G58670 AT3G58670 AT3G58670 AT3G58670
fragaria_vesca	FvH4_6g27560 FvH4_6g27560 FvH4_6g27560
malus_domestica	MD09G1236500.v1.1 MD17G1266100.v1.1
prunus_persica	Prupe.3G116600_v2.0.a1 Prupe.3G116600_v2.0.a1 Prupe.3G116600_v2.0.a1 Prupe.3G116600_v2.0.a1 Prupe.3G116600_v2.0.a1 Prupe.3G116600_v2.0.a1
pyrus_communis	pycom09g15490 pycom17g26570
rosa_chinensis	RchiOBHm_Chr2g0129981
rosa_laevigata	RLG00000019117
rosa_multiflora	Rmu_sc0005625.1_g000009
rosa_roxburghii	Rroxscaffold_2G00114180
rosa_rugosa	Rorug02G0290500 Rorug02G0290600 Rorug02G0290700
rosa_samantha	Rh2AG341900 Rh2BG350100 Rh2CG329300 Rh2DG368200
rosa_wichuraiana	Rw2G027720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	4 cut(s)	33, 149, 580, 1537
AccI	GTMKAC	1 cut(s)	206
AciI	CCGC	3 cut(s)	537, 557, 937
AclWI	GGATC	1 cut(s)	1543
AcsI	RAATTY	1 cut(s)	1483
AcuI	CTGAAG	1 cut(s)	1124
AfiI	CCNNNNNNNGG	3 cut(s)	519, 556, 1069
AflII	CTTAAG	1 cut(s)	872
AflIII	ACRYGT	3 cut(s)	781, 1302, 1495
AgeI	ACCGGT	1 cut(s)	1062
AgsI	TTSAA	1 cut(s)	1634
AhdI	GACNNNNNGTC	1 cut(s)	508
AjiI	CACGTC	1 cut(s)	782
AjnI	CCWGG	1 cut(s)	1322
Alw21I	GWGCWC	1 cut(s)	631
Alw26I	GTCTC	1 cut(s)	338
Alw44I	GTGCAC	1 cut(s)	627
AlwI	GGATC	1 cut(s)	1543
AoxI	GGCC	2 cut(s)	939, 1320
ApaLI	GTGCAC	1 cut(s)	627
ApeKI	GCWGC	8 cut(s)	5, 445, 554, 749, 980, 1106, 1372, 1505
ApoI	RAATTY	1 cut(s)	1483
ArsI	GACNNNNNNTTYG	4 cut(s)	184, 216, 1197, 1229
AseI	ATTAAT	1 cut(s)	1164
AsiGI	ACCGGT	1 cut(s)	1062
AspLEI	GCGC	1 cut(s)	445
AspS9I	GGNCC	2 cut(s)	75, 939
AsuHPI	GGTGA	3 cut(s)	106, 590, 1046
AvaII	GGWCC	1 cut(s)	75
AxyI	CCTNAGG	1 cut(s)	231
BaeGI	GKGCMC	2 cut(s)	631, 1246
Bbv12I	GWGCWC	1 cut(s)	631
BbvCI	CCTCAGC	1 cut(s)	1209
BbvI	GCAGC	8 cut(s)	17, 457, 566, 736, 967, 1093, 1384, 1492
BccI	CCATC	5 cut(s)	402, 575, 1025, 1383, 1424
BceAI	ACGGC	1 cut(s)	684
BciT130I	CCWGG	1 cut(s)	1324
BclI	TGATCA	1 cut(s)	1660
BcoDI	GTCTC	1 cut(s)	338
BfaI	CTAG	5 cut(s)	459, 1041, 1328, 1466, 1488
BfrI	CTTAAG	1 cut(s)	872
BfuAI	ACCTGC	4 cut(s)	33, 149, 580, 1537
BisI	GCNGC	9 cut(s)	6, 446, 538, 555, 750, 981, 1107, 1373, 1506
BlpI	GCTNAGC	1 cut(s)	399
BlsI	GCNGC	9 cut(s)	7, 447, 539, 556, 751, 982, 1108, 1374, 1507
Bme1390I	CCNGG	1 cut(s)	1324
Bme18I	GGWCC	1 cut(s)	75
BmeRI	GACNNNNNGTC	1 cut(s)	508
BmgBI	CACGTC	1 cut(s)	782
BmgT120I	GGNCC	2 cut(s)	75, 939
BmiI	GGNNCC	1 cut(s)	618
BmrFI	CCNGG	1 cut(s)	1324
Bpu10I	CCTNAGC	1 cut(s)	1209
Bpu1102I	GCTNAGC	1 cut(s)	399
BsaJI	CCNNGG	1 cut(s)	1020
BsaWI	WCCGGW	2 cut(s)	739, 1062
BsaXI	ACNNNNNCTCC	8 cut(s)	314, 344, 562, 592, 1345, 1375, 1425, 1455
Bsc4I	CCNNNNNNNGG	3 cut(s)	519, 556, 1069
Bse118I	RCCGGY	2 cut(s)	1062, 1396
Bse1I	ACTGG	1 cut(s)	1716
Bse21I	CCTNAGG	1 cut(s)	231
Bse3DI	GCAATG	2 cut(s)	24, 396
BseBI	CCWGG	1 cut(s)	1324
BseDI	CCNNGG	1 cut(s)	1020
BseGI	GGATG	2 cut(s)	413, 1699
BseLI	CCNNNNNNNGG	3 cut(s)	519, 556, 1069
BseMI	GCAATG	2 cut(s)	24, 396
BseMII	CTCAG	4 cut(s)	483, 1200, 1376, 1665
BseNI	ACTGG	1 cut(s)	1716
BseRI	GAGGAG	1 cut(s)	538
BseSI	GKGCMC	2 cut(s)	631, 1246
BseXI	GCAGC	8 cut(s)	17, 457, 566, 736, 967, 1093, 1384, 1492
BsgI	GTGCAG	5 cut(s)	177, 608, 966, 1107, 1391
BshFI	GGCC	2 cut(s)	941, 1322
BshTI	ACCGGT	1 cut(s)	1062
BsiHKAI	GWGCWC	1 cut(s)	631
BsiSI	CCGG	3 cut(s)	740, 1063, 1397
BslFI	GGGAC	1 cut(s)	515
BslI	CCNNNNNNNGG	3 cut(s)	519, 556, 1069
BsmAI	GTCTC	1 cut(s)	338
BsmFI	GGGAC	1 cut(s)	515
BsmI	GAATGC	2 cut(s)	528, 1285
BsnI	GGCC	2 cut(s)	941, 1322
Bsp1286I	GDGCHC	2 cut(s)	631, 1246
Bsp143I	GATC	5 cut(s)	34, 679, 1402, 1535, 1660
Bsp1720I	GCTNAGC	1 cut(s)	399
BspACI	CCGC	3 cut(s)	537, 557, 937
BspANI	GGCC	2 cut(s)	941, 1322
BspCNI	CTCAG	4 cut(s)	484, 1201, 1377, 1666
BspHI	TCATGA	1 cut(s)	1663
BspLI	GGNNCC	1 cut(s)	618
BspMI	ACCTGC	4 cut(s)	33, 149, 580, 1537
BspPI	GGATC	1 cut(s)	1543
BspTI	CTTAAG	1 cut(s)	872
BsrDI	GCAATG	2 cut(s)	24, 396
BsrFI	RCCGGY	2 cut(s)	1062, 1396
BsrI	ACTGG	1 cut(s)	1716
BssAI	RCCGGY	2 cut(s)	1062, 1396
BssECI	CCNNGG	1 cut(s)	1020
BssMI	GATC	5 cut(s)	34, 679, 1402, 1535, 1660
BssNAI	GTATAC	1 cut(s)	207
BssT1I	CCWWGG	1 cut(s)	1020
Bst1107I	GTATAC	1 cut(s)	207
Bst2UI	CCWGG	1 cut(s)	1324
Bst4CI	ACNGT	7 cut(s)	218, 432, 1190, 1311, 1369, 1522, 1628
Bst6I	CTCTTC	1 cut(s)	1143
BstAFI	CTTAAG	1 cut(s)	872
BstC8I	GCNNGC	2 cut(s)	939, 1344
BstF5I	GGATG	2 cut(s)	413, 1699
BstHHI	GCGC	1 cut(s)	445
BstKTI	GATC	5 cut(s)	37, 682, 1405, 1538, 1663
BstMAI	GTCTC	1 cut(s)	338
BstMBI	GATC	5 cut(s)	34, 679, 1402, 1535, 1660
BstMWI	GCNNNNNNNGC	7 cut(s)	14, 61, 395, 534, 796, 1381, 1511
BstNI	CCWGG	1 cut(s)	1324
BstNSI	RCATGY	3 cut(s)	1306, 1499, 1745
BstSCI	CCNGG	1 cut(s)	1322
BstSLI	GKGCMC	2 cut(s)	631, 1246
BstV1I	GCAGC	8 cut(s)	17, 457, 566, 736, 967, 1093, 1384, 1492
BstX2I	RGATCY	1 cut(s)	1535
BstYI	RGATCY	1 cut(s)	1535
BstZ17I	GTATAC	1 cut(s)	207
Bsu36I	CCTNAGG	1 cut(s)	231
BsuRI	GGCC	2 cut(s)	941, 1322
BtrI	CACGTC	1 cut(s)	782
BtsCI	GGATG	2 cut(s)	413, 1699
BtsI	GCAGTG	2 cut(s)	1644, 1663
BtsIMutI	CAGTG	3 cut(s)	1518, 1644, 1663
BveI	ACCTGC	4 cut(s)	33, 149, 580, 1537
Cac8I	GCNNGC	2 cut(s)	939, 1344
CciI	TCATGA	1 cut(s)	1663
CfoI	GCGC	1 cut(s)	445
Cfr10I	RCCGGY	2 cut(s)	1062, 1396
Cfr13I	GGNCC	2 cut(s)	75, 939
CspAI	ACCGGT	1 cut(s)	1062
DpnI	GATC	5 cut(s)	36, 681, 1404, 1537, 1662
DpnII	GATC	5 cut(s)	34, 679, 1402, 1535, 1660
DraI	TTTAAA	2 cut(s)	364, 1171
DriI	GACNNNNNGTC	1 cut(s)	508
Eam1104I	CTCTTC	1 cut(s)	1143
Eam1105I	GACNNNNNGTC	1 cut(s)	508
EarI	CTCTTC	1 cut(s)	1143
Eco130I	CCWWGG	1 cut(s)	1020
Eco47I	GGWCC	1 cut(s)	75
Eco57I	CTGAAG	1 cut(s)	1124
Eco81I	CCTNAGG	1 cut(s)	231
EcoRII	CCWGG	1 cut(s)	1322
EcoT14I	CCWWGG	1 cut(s)	1020
ErhI	CCWWGG	1 cut(s)	1020
FaqI	GGGAC	1 cut(s)	515
FauI	CCCGC	2 cut(s)	550, 930
FbaI	TGATCA	1 cut(s)	1660
FblI	GTMKAC	1 cut(s)	206
Fnu4HI	GCNGC	9 cut(s)	6, 446, 538, 555, 750, 981, 1107, 1373, 1506
FokI	GGATG	2 cut(s)	420, 1706
Fsp4HI	GCNGC	9 cut(s)	6, 446, 538, 555, 750, 981, 1107, 1373, 1506
FspBI	CTAG	5 cut(s)	459, 1041, 1328, 1466, 1488
GlaI	GCGC	1 cut(s)	444
GluI	GCNGC	9 cut(s)	6, 446, 538, 555, 750, 981, 1107, 1373, 1506
HaeIII	GGCC	2 cut(s)	941, 1322
HapII	CCGG	3 cut(s)	740, 1063, 1397
HhaI	GCGC	1 cut(s)	445
Hin6I	GCGC	1 cut(s)	443
HinP1I	GCGC	1 cut(s)	443
HincII	GTYRAC	2 cut(s)	31, 1014
HindII	GTYRAC	2 cut(s)	31, 1014
HindIII	AAGCTT	1 cut(s)	797
HinfI	GANTC	5 cut(s)	145, 304, 503, 709, 808
HpaII	CCGG	3 cut(s)	740, 1063, 1397
HphI	GGTGA	3 cut(s)	106, 590, 1046
Hpy166II	GTNNAC	6 cut(s)	31, 207, 629, 1014, 1314, 1493
Hpy188I	TCNGA	4 cut(s)	696, 714, 737, 1143
Hpy188III	TCNNGA	3 cut(s)	812, 1631, 1664
Hpy8I	GTNNAC	6 cut(s)	31, 207, 629, 1014, 1314, 1493
HpyAV	CCTTC	3 cut(s)	341, 523, 1564
HpyCH4III	ACNGT	7 cut(s)	218, 432, 1190, 1311, 1369, 1522, 1628
HpyCH4IV	ACGT	1 cut(s)	781
HpyF10VI	GCNNNNNNNGC	7 cut(s)	14, 61, 395, 534, 796, 1381, 1511
HpySE526I	ACGT	1 cut(s)	781
HspAI	GCGC	1 cut(s)	443
Ksp22I	TGATCA	1 cut(s)	1660
Kzo9I	GATC	5 cut(s)	34, 679, 1402, 1535, 1660
LmnI	GCTCC	4 cut(s)	525, 1366, 1433, 1682
Lsp1109I	GCAGC	8 cut(s)	17, 457, 566, 736, 967, 1093, 1384, 1492
MaeI	CTAG	5 cut(s)	459, 1041, 1328, 1466, 1488
MaeII	ACGT	1 cut(s)	781
MaeIII	GTNAC	5 cut(s)	432, 993, 1305, 1609, 1622
MalI	GATC	5 cut(s)	36, 681, 1404, 1537, 1662
MboI	GATC	5 cut(s)	34, 679, 1402, 1535, 1660
MboII	GAAGA	3 cut(s)	265, 313, 1130
MfeI	CAATTG	2 cut(s)	1101, 1614
MflI	RGATCY	1 cut(s)	1535
MhlI	GDGCHC	2 cut(s)	631, 1246
MlyI	GAGTC	2 cut(s)	497, 817
MmeI	TCCRAC	7 cut(s)	113, 737, 974, 1047, 1164, 1513, 1557
MseI	TTAA	9 cut(s)	173, 177, 363, 594, 873, 884, 1164, 1170, 1421
MspA1I	CMGCKG	1 cut(s)	557
MspCI	CTTAAG	1 cut(s)	872
MspI	CCGG	3 cut(s)	740, 1063, 1397
MspR9I	CCNGG	1 cut(s)	1324
MunI	CAATTG	2 cut(s)	1101, 1614
Mva1269I	GAATGC	2 cut(s)	528, 1285
MvaI	CCWGG	1 cut(s)	1324
MwoI	GCNNNNNNNGC	7 cut(s)	14, 61, 395, 534, 796, 1381, 1511
NdeII	GATC	5 cut(s)	34, 679, 1402, 1535, 1660
NlaIV	GGNNCC	1 cut(s)	618
NmuCI	GTSAC	3 cut(s)	432, 1609, 1622
NspI	RCATGY	3 cut(s)	1306, 1499, 1745
PacI	TTAATTAA	1 cut(s)	177
PagI	TCATGA	1 cut(s)	1663
PciI	ACATGT	2 cut(s)	1302, 1495
PctI	GAATGC	2 cut(s)	528, 1285
PfeI	GAWTC	3 cut(s)	145, 304, 709
PinAI	ACCGGT	1 cut(s)	1062
PkrI	GCNGC	9 cut(s)	7, 447, 539, 556, 751, 982, 1108, 1374, 1507
PleI	GAGTC	2 cut(s)	497, 816
PpsI	GAGTC	2 cut(s)	497, 816
PscI	ACATGT	2 cut(s)	1302, 1495
PshBI	ATTAAT	1 cut(s)	1164
Psp6I	CCWGG	1 cut(s)	1322
PspGI	CCWGG	1 cut(s)	1322
PspN4I	GGNNCC	1 cut(s)	618
PspPI	GGNCC	2 cut(s)	75, 939
PsuI	RGATCY	1 cut(s)	1535
SaqAI	TTAA	9 cut(s)	173, 177, 363, 594, 873, 884, 1164, 1170, 1421
SatI	GCNGC	9 cut(s)	6, 446, 538, 555, 750, 981, 1107, 1373, 1506
Sau3AI	GATC	5 cut(s)	34, 679, 1402, 1535, 1660
Sau96I	GGNCC	2 cut(s)	75, 939
SchI	GAGTC	2 cut(s)	497, 817
ScrFI	CCNGG	1 cut(s)	1324
SduI	GDGCHC	2 cut(s)	631, 1246
SinI	GGWCC	1 cut(s)	75
SmlI	CTYRAG	1 cut(s)	872
SmoI	CTYRAG	1 cut(s)	872
SsiI	CCGC	3 cut(s)	537, 557, 937
SspI	AATATT	2 cut(s)	370, 598
SspMI	CTAG	5 cut(s)	459, 1041, 1328, 1466, 1488
StyD4I	CCNGG	1 cut(s)	1322
StyI	CCWWGG	1 cut(s)	1020
TaaI	ACNGT	7 cut(s)	218, 432, 1190, 1311, 1369, 1522, 1628
TaiI	ACGT	1 cut(s)	784
TauI	GCSGC	1 cut(s)	540
TfiI	GAWTC	3 cut(s)	145, 304, 709
Tru1I	TTAA	9 cut(s)	173, 177, 363, 594, 873, 884, 1164, 1170, 1421
Tru9I	TTAA	9 cut(s)	173, 177, 363, 594, 873, 884, 1164, 1170, 1421
TscAI	CASTG	3 cut(s)	1525, 1644, 1663
TseFI	GTSAC	3 cut(s)	432, 1609, 1622
TseI	GCWGC	8 cut(s)	5, 445, 554, 749, 980, 1106, 1372, 1505
Tsp45I	GTSAC	3 cut(s)	432, 1609, 1622
TspDTI	ATGAA	8 cut(s)	35, 227, 296, 306, 1514, 1641, 1712, 1719
TspRI	CASTG	3 cut(s)	1525, 1644, 1663
Vha464I	CTTAAG	1 cut(s)	872
VneI	GTGCAC	1 cut(s)	627
VpaK11BI	GGWCC	1 cut(s)	75
VspI	ATTAAT	1 cut(s)	1164
XapI	RAATTY	1 cut(s)	1483
XceI	RCATGY	3 cut(s)	1306, 1499, 1745
XmiI	GTMKAC	1 cut(s)	206
XspI	CTAG	5 cut(s)	459, 1041, 1328, 1466, 1488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.