Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004451

Physical Location & Seq

Genomic Coordinates Reverse (-)

31825361 .. 31827110

Gene Structure 1750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0290500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ATGTCTTCCTCTGTGAGGCCTCAAGAGGCAGTTCGCGTCCTTCCAAACTTCAGGGACCTAGTGGGTGGATTTAAAATAGAAGGTTATGTTTTGAGCAGTTCATCAAAATATTTACTGAGGAGGGTCTTGCATCCGTCTGTGGACCTTGAAAAATACAATGCAGTTCTGGAGTTTCTAGGTGTGGAATTTGCTAACGACCATTGGTATACAGAATGCATCCAAAGGCTTTGCAGCTCAATTGATGAAAAGGTTACTGGAGCTGGCATTATTTCATTGCTAAAGTGCATCAAGAATCTGACGTCAAGCTCTCCTGATGATCCCTTACTGAGGGACTTAACCAACAGCATTGCAAGAAGAAAGTGTTTGAAGACCTCGGATTGGACAGATTCATACAAAACACCAGAAGAATCTATTCTGTTTGATCCAGCCTGGGAAAGTATTCTGGATCGGACAAAGATACCAACCATTGATGAGAACTTTTATGGAACTGATATTCTTGTATACAAGAATAATGAGTTAAGAGATATCGGTGTGAAGTGGCGTCCAGAAGTGCCAGATGGAACCACACCTCTGTGGGTACCTGATCAGGGATGGTTTGCCCCTCAGCACTGTGTACTTCATGACAAAGAAAATCTGTTTCTGTCCTTCTTATGTGTGCTTGATGAACATTACAATGAAGAGCTCCTCCCCGTGTTTTCTTCAGCCTTTGGAGTTGCAGAGAATCCTTCTCTCGATCATTACGTAGATCTCTGGAACAAATGGAATGGGAAGGGCCAACTGACTCTGGAAGAGTACTGCTGCTCCTTCTGGAAGTATGTTGTAGACAACTGGAATCCAGAAGTTGAAGAGGCTTTAAAAGTTCAGTACATACCATTTACCAAAATACAGTTGGATCCAGAGAAAGATGTATTAAATGGATTGATTAACAGGGGTTTAATCAAAATTATTCTGGGTTTTCTCGCTGGTTCGCAGGTTACTATGCCATTGGAAGATAGGAAAGATGCTGCATCCTCAATTGCTAGACTTAAGGTGTATAAGTTGGACAATCCATATGAATACATTTACAGACTAATGCGATCTGAGAGTACAAAAGCGGATGTGAAAAAAGTGAAGCTAGTTTCCTGGAAGAAGCGGTCTGAGCGGTTGTTCATTGATAGTTCAGGGTACAACAATGGAAAATCTGATCTAAAATTTGTTGCAGCTTTCGCTGACGAACTTGCTCAAGGACTGTTGGTGCAAGCAAAAGCAAGAGCAACATTGAGCAAGATCATCCAAATTGGGTTTTTGTCTGGTTTTAGTGAGAATGAAGTGGATGCATGTCTTGCTAATGGGAGAAAATTTAGAGTTGTCTGTGGAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0008152 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00430 ko01100 map00430 map01100

Pfam Domains

Protein Families

PCO_ADO

Protein Analysis

453

Amino Acids

51.63

Weight (kDa)

5.86

Isoelectric Point (pI)

35.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42670 AT2G42670 AT2G42670 AT3G58670 AT3G58670 AT3G58670 AT3G58670
fragaria_vesca	FvH4_6g27560 FvH4_6g27560 FvH4_6g27560
malus_domestica	MD09G1236500.v1.1 MD17G1266100.v1.1
prunus_persica	Prupe.3G116600_v2.0.a1 Prupe.3G116600_v2.0.a1 Prupe.3G116600_v2.0.a1 Prupe.3G116600_v2.0.a1 Prupe.3G116600_v2.0.a1 Prupe.3G116600_v2.0.a1
pyrus_communis	pycom09g15490 pycom17g26570
rosa_chinensis	RchiOBHm_Chr2g0129981
rosa_laevigata	RLG00000019117
rosa_multiflora	Rmu_sc0005625.1_g000009
rosa_roxburghii	Rroxscaffold_2G00114180
rosa_rugosa	Rorug02G0290500 Rorug02G0290600 Rorug02G0290700
rosa_samantha	Rh2AG341900 Rh2BG350100 Rh2CG329300 Rh2DG368200
rosa_wichuraiana	Rw2G027720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	302
Acc36I	ACCTGC	1 cut(s)	961
Acc65I	GGTACC	1 cut(s)	577
AccB1I	GGYRCC	1 cut(s)	577
AccBSI	CCGCTC	1 cut(s)	1141
AccI	GTMKAC	3 cut(s)	206, 501, 822
AccII	CGCG	1 cut(s)	36
AciI	CCGC	3 cut(s)	1094, 1132, 1141
AclWI	GGATC	5 cut(s)	311, 416, 453, 887, 900
AcsI	RAATTY	3 cut(s)	185, 1190, 1337
AcuI	CTGAAG	2 cut(s)	34, 684
AcyI	GRCGYC	2 cut(s)	299, 541
AfaI	GTAC	6 cut(s)	579, 615, 794, 866, 1087, 1166
AfiI	CCNNNNNNNGG	4 cut(s)	15, 327, 378, 587
AflII	CTTAAG	1 cut(s)	1025
AgsI	TTSAA	3 cut(s)	149, 367, 845
AjnI	CCWGG	2 cut(s)	428, 1121
AleI	CACNNNNGTG	1 cut(s)	571
AluBI	AGCT	6 cut(s)	234, 260, 306, 682, 1114, 1202
AluI	AGCT	6 cut(s)	234, 260, 306, 682, 1114, 1202
Alw21I	GWGCWC	1 cut(s)	684
AlwI	GGATC	5 cut(s)	311, 416, 453, 887, 900
AoxI	GGCC	2 cut(s)	17, 772
ApeKI	GCWGC	4 cut(s)	231, 798, 1004, 1199
ApoI	RAATTY	3 cut(s)	185, 1190, 1337
Asp700I	GAANNNNTTC	2 cut(s)	411, 438
Asp718I	GGTACC	1 cut(s)	577
AspS9I	GGNCC	3 cut(s)	55, 142, 772
AvaII	GGWCC	2 cut(s)	55, 142
BamHI	GGATCC	1 cut(s)	892
BanI	GGYRCC	1 cut(s)	577
BanII	GRGCYC	1 cut(s)	684
BbsI	GAAGAC	1 cut(s)	374
Bbv12I	GWGCWC	1 cut(s)	684
BbvCI	CCTCAGC	1 cut(s)	603
BbvI	GCAGC	4 cut(s)	243, 785, 991, 1211
BccI	CCATC	2 cut(s)	551, 585
BciT130I	CCWGG	2 cut(s)	430, 1123
BclI	TGATCA	1 cut(s)	583
BfaI	CTAG	4 cut(s)	59, 176, 1020, 1115
BfrI	CTTAAG	1 cut(s)	1025
BfuAI	ACCTGC	1 cut(s)	961
BglII	AGATCT	1 cut(s)	745
BisI	GCNGC	4 cut(s)	232, 799, 1005, 1200
BlsI	GCNGC	4 cut(s)	233, 800, 1006, 1201
BmcAI	AGTACT	1 cut(s)	794
Bme1390I	CCNGG	2 cut(s)	430, 1123
Bme18I	GGWCC	2 cut(s)	55, 142
BmgT120I	GGNCC	3 cut(s)	55, 142, 772
BmiI	GGNNCC	4 cut(s)	56, 562, 579, 894
BmrFI	CCNGG	2 cut(s)	430, 1123
BmsI	GCATC	6 cut(s)	139, 225, 294, 991, 1016, 1303
BpiI	GAAGAC	1 cut(s)	374
BpmI	CTGGAG	2 cut(s)	188, 276
Bpu10I	CCTNAGC	1 cut(s)	603
BpuEI	CTTGAG	2 cut(s)	6, 1206
BsaAI	YACGTR	1 cut(s)	742
BsaHI	GRCGYC	2 cut(s)	299, 541
BsaJI	CCNNGG	2 cut(s)	372, 429
BsaXI	ACNNNNNCTCC	2 cut(s)	785, 815
Bsc4I	CCNNNNNNNGG	4 cut(s)	15, 327, 378, 587
Bse1I	ACTGG	2 cut(s)	259, 833
Bse3DI	GCAATG	2 cut(s)	272, 345
BseBI	CCWGG	2 cut(s)	430, 1123
BseDI	CCNNGG	2 cut(s)	372, 429
BseGI	GGATG	7 cut(s)	130, 216, 596, 1007, 1102, 1269, 1318
BseLI	CCNNNNNNNGG	4 cut(s)	15, 327, 378, 587
BseMI	GCAATG	2 cut(s)	272, 345
BseMII	CTCAG	5 cut(s)	107, 317, 617, 1071, 1128
BseNI	ACTGG	2 cut(s)	259, 833
BseRI	GAGGAG	2 cut(s)	133, 674
BseXI	GCAGC	4 cut(s)	243, 785, 991, 1211
Bsh1236I	CGCG	1 cut(s)	36
BshFI	GGCC	2 cut(s)	19, 774
BshNI	GGYRCC	1 cut(s)	577
BsiHKAI	GWGCWC	1 cut(s)	684
BslFI	GGGAC	2 cut(s)	68, 344
BslI	CCNNNNNNNGG	4 cut(s)	15, 327, 378, 587
BsmFI	GGGAC	2 cut(s)	68, 344
BsmI	GAATGC	1 cut(s)	218
BsnI	GGCC	2 cut(s)	19, 774
Bsp1286I	GDGCHC	1 cut(s)	684
BspACI	CCGC	3 cut(s)	1094, 1132, 1141
BspANI	GGCC	2 cut(s)	19, 774
BspCNI	CTCAG	5 cut(s)	108, 318, 616, 1072, 1129
BspFNI	CGCG	1 cut(s)	36
BspHI	TCATGA	1 cut(s)	619
BspLI	GGNNCC	4 cut(s)	56, 562, 579, 894
BspMI	ACCTGC	1 cut(s)	961
BspPI	GGATC	5 cut(s)	311, 416, 453, 887, 900
BspQI	GCTCTTC	1 cut(s)	672
BspT107I	GGYRCC	1 cut(s)	577
BspTI	CTTAAG	1 cut(s)	1025
BsrBI	CCGCTC	1 cut(s)	1141
BsrDI	GCAATG	2 cut(s)	272, 345
BsrI	ACTGG	2 cut(s)	259, 833
BssECI	CCNNGG	2 cut(s)	372, 429
BssNAI	GTATAC	2 cut(s)	207, 502
BssNI	GRCGYC	2 cut(s)	299, 541
Bst1107I	GTATAC	2 cut(s)	207, 502
Bst2UI	CCWGG	2 cut(s)	430, 1123
Bst4CI	ACNGT	3 cut(s)	611, 888, 1230
Bst6I	CTCTTC	3 cut(s)	672, 783, 840
BstACI	GRCGYC	2 cut(s)	299, 541
BstAFI	CTTAAG	1 cut(s)	1025
BstAPI	GCANNNNNTGC	1 cut(s)	1322
BstBAI	YACGTR	1 cut(s)	742
BstC8I	GCNNGC	2 cut(s)	262, 1239
BstDEI	CTNAG	5 cut(s)	116, 326, 603, 1080, 1137
BstENI	CCTNNNNNAGG	2 cut(s)	13, 325
BstF5I	GGATG	7 cut(s)	130, 216, 596, 1007, 1102, 1269, 1318
BstFNI	CGCG	1 cut(s)	36
BstMWI	GCNNNNNNNGC	3 cut(s)	1138, 1205, 1322
BstNI	CCWGG	2 cut(s)	430, 1123
BstNSI	RCATGY	1 cut(s)	1320
BstSCI	CCNGG	2 cut(s)	428, 1121
BstSNI	TACGTA	1 cut(s)	742
BstUI	CGCG	1 cut(s)	36
BstV1I	GCAGC	4 cut(s)	243, 785, 991, 1211
BstV2I	GAAGAC	1 cut(s)	374
BstX2I	RGATCY	2 cut(s)	745, 892
BstYI	RGATCY	2 cut(s)	745, 892
BstZ17I	GTATAC	2 cut(s)	207, 502
BsuRI	GGCC	2 cut(s)	19, 774
BtsCI	GGATG	7 cut(s)	130, 216, 596, 1007, 1102, 1269, 1318
BtsIMutI	CAGTG	1 cut(s)	607
BveI	ACCTGC	1 cut(s)	961
Cac8I	GCNNGC	2 cut(s)	262, 1239
CciI	TCATGA	1 cut(s)	619
Cfr13I	GGNCC	3 cut(s)	55, 142, 772
CseI	GACGC	2 cut(s)	25, 530
Csp6I	GTAC	6 cut(s)	578, 614, 793, 865, 1086, 1165
CviAII	CATG	2 cut(s)	620, 1317
CviQI	GTAC	6 cut(s)	578, 614, 793, 865, 1086, 1165
DdeI	CTNAG	5 cut(s)	116, 326, 603, 1080, 1137
DraI	TTTAAA	2 cut(s)	73, 855
Eam1104I	CTCTTC	3 cut(s)	672, 783, 840
EarI	CTCTTC	3 cut(s)	672, 783, 840
Ecl136II	GAGCTC	1 cut(s)	682
Eco105I	TACGTA	1 cut(s)	742
Eco147I	AGGCCT	1 cut(s)	19
Eco24I	GRGCYC	1 cut(s)	684
Eco32I	GATATC	1 cut(s)	526
Eco47I	GGWCC	2 cut(s)	55, 142
Eco53kI	GAGCTC	1 cut(s)	682
Eco57I	CTGAAG	2 cut(s)	34, 684
EcoICRI	GAGCTC	1 cut(s)	682
EcoNI	CCTNNNNNAGG	2 cut(s)	13, 325
EcoO109I	RGGNCCY	1 cut(s)	55
EcoRII	CCWGG	2 cut(s)	428, 1121
EcoRV	GATATC	1 cut(s)	526
EcoT22I	ATGCAT	2 cut(s)	218, 1318
EcoT38I	GRGCYC	1 cut(s)	684
FaeI	CATG	2 cut(s)	623, 1320
FaqI	GGGAC	2 cut(s)	68, 344
FatI	CATG	2 cut(s)	619, 1316
FauNDI	CATATG	1 cut(s)	1051
FbaI	TGATCA	1 cut(s)	583
FblI	GTMKAC	3 cut(s)	206, 501, 822
Fnu4HI	GCNGC	4 cut(s)	232, 799, 1005, 1200
FokI	GGATG	7 cut(s)	117, 203, 603, 994, 1109, 1256, 1325
FriOI	GRGCYC	1 cut(s)	684
Fsp4HI	GCNGC	4 cut(s)	232, 799, 1005, 1200
FspBI	CTAG	4 cut(s)	59, 176, 1020, 1115
GluI	GCNGC	4 cut(s)	232, 799, 1005, 1200
GsuI	CTGGAG	2 cut(s)	188, 276
HaeIII	GGCC	2 cut(s)	19, 774
HgaI	GACGC	2 cut(s)	25, 530
Hin1I	GRCGYC	2 cut(s)	299, 541
Hin1II	CATG	2 cut(s)	623, 1320
HinfI	GANTC	6 cut(s)	292, 386, 407, 721, 781, 832
Hpy166II	GTNNAC	5 cut(s)	142, 207, 502, 614, 823
Hpy188I	TCNGA	6 cut(s)	297, 376, 450, 1081, 1138, 1183
Hpy8I	GTNNAC	5 cut(s)	142, 207, 502, 614, 823
HpyAV	CCTTC	6 cut(s)	50, 74, 655, 735, 763, 814
HpyCH4III	ACNGT	3 cut(s)	611, 888, 1230
HpyCH4IV	ACGT	2 cut(s)	299, 741
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1138, 1205, 1322
HpyF3I	CTNAG	5 cut(s)	116, 326, 603, 1080, 1137
HpySE526I	ACGT	2 cut(s)	299, 741
Hsp92I	GRCGYC	2 cut(s)	299, 541
Hsp92II	CATG	2 cut(s)	623, 1320
KpnI	GGTACC	1 cut(s)	581
Ksp22I	TGATCA	1 cut(s)	583
LguI	GCTCTTC	1 cut(s)	672
LmnI	GCTCC	3 cut(s)	257, 687, 806
Lsp1109I	GCAGC	4 cut(s)	243, 785, 991, 1211
LweI	GCATC	6 cut(s)	139, 225, 294, 991, 1016, 1303
MaeI	CTAG	4 cut(s)	59, 176, 1020, 1115
MaeII	ACGT	2 cut(s)	299, 741
MaeIII	GTNAC	2 cut(s)	250, 973
MbiI	CCGCTC	1 cut(s)	1141
MboII	GAAGA	9 cut(s)	366, 379, 416, 689, 690, 800, 857, 1001, 1138
MfeI	CAATTG	2 cut(s)	237, 1014
MflI	RGATCY	2 cut(s)	745, 892
MhlI	GDGCHC	1 cut(s)	684
MluCI	AATT	7 cut(s)	185, 237, 942, 1014, 1190, 1275, 1337
MlyI	GAGTC	1 cut(s)	775
MmeI	TCCRAC	2 cut(s)	870, 1020
Mph1103I	ATGCAT	2 cut(s)	218, 1318
MroXI	GAANNNNTTC	2 cut(s)	411, 438
MseI	TTAA	8 cut(s)	72, 335, 518, 854, 911, 924, 935, 1026
MslI	CAYNNNNRTG	2 cut(s)	571, 672
MspCI	CTTAAG	1 cut(s)	1025
MspR9I	CCNGG	2 cut(s)	430, 1123
MunI	CAATTG	2 cut(s)	237, 1014
Mva1269I	GAATGC	1 cut(s)	218
MvaI	CCWGG	2 cut(s)	430, 1123
MvnI	CGCG	1 cut(s)	36
MwoI	GCNNNNNNNGC	3 cut(s)	1138, 1205, 1322
NdeI	CATATG	1 cut(s)	1051
NlaIII	CATG	2 cut(s)	623, 1320
NlaIV	GGNNCC	4 cut(s)	56, 562, 579, 894
NsiI	ATGCAT	2 cut(s)	218, 1318
NspI	RCATGY	1 cut(s)	1320
OliI	CACNNNNGTG	1 cut(s)	571
PagI	TCATGA	1 cut(s)	619
PceI	AGGCCT	1 cut(s)	19
PciSI	GCTCTTC	1 cut(s)	672
PcsI	WCGNNNNNNNCGW	1 cut(s)	738
PctI	GAATGC	1 cut(s)	218
PdmI	GAANNNNTTC	2 cut(s)	411, 438
PfeI	GAWTC	5 cut(s)	292, 386, 407, 721, 832
PfoI	TCCNGGA	1 cut(s)	1121
PkrI	GCNGC	4 cut(s)	233, 800, 1006, 1201
PleI	GAGTC	1 cut(s)	775
PpsI	GAGTC	1 cut(s)	775
Ppu21I	YACGTR	1 cut(s)	742
PpuMI	RGGWCCY	1 cut(s)	55
Psp124BI	GAGCTC	1 cut(s)	684
Psp5II	RGGWCCY	1 cut(s)	55
Psp6I	CCWGG	2 cut(s)	428, 1121
PspGI	CCWGG	2 cut(s)	428, 1121
PspN4I	GGNNCC	4 cut(s)	56, 562, 579, 894
PspPI	GGNCC	3 cut(s)	55, 142, 772
PspPPI	RGGWCCY	1 cut(s)	55
PsuI	RGATCY	2 cut(s)	745, 892
RsaI	GTAC	6 cut(s)	579, 615, 794, 866, 1087, 1166
RsaNI	GTAC	6 cut(s)	578, 614, 793, 865, 1086, 1165
RseI	CAYNNNNRTG	2 cut(s)	571, 672
SacI	GAGCTC	1 cut(s)	684
SapI	GCTCTTC	1 cut(s)	672
SaqAI	TTAA	8 cut(s)	72, 335, 518, 854, 911, 924, 935, 1026
SatI	GCNGC	4 cut(s)	232, 799, 1005, 1200
Sau96I	GGNCC	3 cut(s)	55, 142, 772
ScaI	AGTACT	1 cut(s)	794
SchI	GAGTC	1 cut(s)	775
ScrFI	CCNGG	2 cut(s)	430, 1123
SduI	GDGCHC	1 cut(s)	684
SfaNI	GCATC	6 cut(s)	139, 225, 294, 991, 1016, 1303
SinI	GGWCC	2 cut(s)	55, 142
SmiMI	CAYNNNNRTG	2 cut(s)	571, 672
SmlI	CTYRAG	3 cut(s)	21, 1025, 1221
SmoI	CTYRAG	3 cut(s)	21, 1025, 1221
SnaBI	TACGTA	1 cut(s)	742
Sse9I	AATT	7 cut(s)	185, 237, 942, 1014, 1190, 1275, 1337
SseBI	AGGCCT	1 cut(s)	19
SsiI	CCGC	3 cut(s)	1094, 1132, 1141
SspI	AATATT	1 cut(s)	110
SspMI	CTAG	4 cut(s)	59, 176, 1020, 1115
SstI	GAGCTC	1 cut(s)	684
StuI	AGGCCT	1 cut(s)	19
StyD4I	CCNGG	2 cut(s)	428, 1121
TaaI	ACNGT	3 cut(s)	611, 888, 1230
TaiI	ACGT	2 cut(s)	302, 744
TaqI	TCGA	1 cut(s)	732
TasI	AATT	7 cut(s)	185, 237, 942, 1014, 1190, 1275, 1337
TatI	WGTACW	4 cut(s)	613, 792, 864, 1085
TfiI	GAWTC	5 cut(s)	292, 386, 407, 721, 832
Tru1I	TTAA	8 cut(s)	72, 335, 518, 854, 911, 924, 935, 1026
Tru9I	TTAA	8 cut(s)	72, 335, 518, 854, 911, 924, 935, 1026
TscAI	CASTG	1 cut(s)	614
TseI	GCWGC	4 cut(s)	231, 798, 1004, 1199
TspGWI	ACGGA	1 cut(s)	123
TspRI	CASTG	1 cut(s)	614
Vha464I	CTTAAG	1 cut(s)	1025
VpaK11BI	GGWCC	2 cut(s)	55, 142
XagI	CCTNNNNNAGG	2 cut(s)	13, 325
XapI	RAATTY	3 cut(s)	185, 1190, 1337
XceI	RCATGY	1 cut(s)	1320
XcmI	CCANNNNNNNNNTGG	1 cut(s)	886
XmiI	GTMKAC	3 cut(s)	206, 501, 822
XmnI	GAANNNNTTC	2 cut(s)	411, 438
XspI	CTAG	4 cut(s)	59, 176, 1020, 1115
ZraI	GACGTC	1 cut(s)	300
ZrmI	AGTACT	1 cut(s)	794
Zsp2I	ATGCAT	2 cut(s)	218, 1318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.