FvH4_6g27560

2-aminoethanethiol dioxygenase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0004451
Physical Location & Seq
Reverse (-)
21195151 .. 21202854
7704 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g27560.t2

Sequence Viewer

Length: 720 bp
ATGCCATACTATATTCAGAGACTCTATAATATGTGCAAATCAAATCTTTCACCGACTGGACCTCTTTCGGAAGAAGCTCTCGAAAAAGTTCGCGTTAAACTAGAGAAAATCAAGCCTGCAGATGTAGGTTTAGAACAAGAGGCACAATTGGTACGCAACTGGCCAGGTGCTATGCTTGAGCGTAATGTGGATCATCAGTCACTGCCACCAATCAAATACTTGCATTTACATGAGTGCGATAGCTTCTCAATGGGAATCTTTTGCATGCCACCTTCCTCTATCATACCCCTTCATAATCATCCAGGAATGACTGTGTTGAGCAAACTTATATATGGTACTTTGCTTGTTAATTCATATGACTGGCTTGATGTACCTGAGCCTGCCGATCCAACAGAAGCAAGACCTGCGAAGCTGGTCAGAGATGTTGAGATGACAGCTCCTTGCCCAGCAACAGTTCTTTATCCCACAAGTGGTGGCAATATCCATAGTTTCACAGCGATAACTCCCTGTGCCATATTTGACATCTTAGCTCCACCTTATTCTTCGGAAGATGGTCGACACTGCACTTATTTCCGGAAGTCCTCGAGAAAAGATCTGCCTGATGATCTCGAGTATGATGGAGTCACTGCACCTCAGGTGACTTGGTTAGAAGAGTTTCAACCTCCCGACAACTTTGTGATTCGGAGAGGGCTGTACAAGGGTCCTGTTATTCGAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0008152 GO:0055114
KEGG Pathways
Metabolic & Signaling
ko00430 ko01100 map00430 map01100
Pfam Domains
Protein Families
PCO_ADO

Protein Analysis

240

Amino Acids

26.93

Weight (kDa)

5.64

Isoelectric Point (pI)

53.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCO_ADO PF07847 34 - 237 3.5e-75 PCO_ADO
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 412
AccI GTMKAC 1 cut(s) 556
AccII CGCG 1 cut(s) 93
AccIII TCCGGA 1 cut(s) 573
AclWI GGATC 2 cut(s) 198, 380
AcoI YGGCCR 1 cut(s) 161
AfaI GTAC 4 cut(s) 153, 337, 372, 695
AfiI CCNNNNNNNGG 1 cut(s) 470
AgsI TTSAA 1 cut(s) 659
AjnI CCWGG 2 cut(s) 163, 301
AluBI AGCT 5 cut(s) 77, 243, 412, 437, 530
AluI AGCT 5 cut(s) 77, 243, 412, 437, 530
Alw26I GTCTC 1 cut(s) 13
AlwI GGATC 2 cut(s) 198, 380
AlwNI CAGNNNCTG 1 cut(s) 202
Ama87I CYCGRG 2 cut(s) 583, 608
Aor13HI TCCGGA 1 cut(s) 573
AoxI GGCC 1 cut(s) 161
Asp700I GAANNNNTTC 2 cut(s) 87, 654
AspS9I GGNCC 2 cut(s) 59, 701
AsuHPI GGTGA 2 cut(s) 42, 649
AsuII TTCGAA 1 cut(s) 712
AvaI CYCGRG 2 cut(s) 583, 608
AvaII GGWCC 2 cut(s) 59, 701
AxyI CCTNAGG 1 cut(s) 633
BalI TGGCCA 1 cut(s) 163
BccI CCATC 2 cut(s) 545, 611
BciT130I CCWGG 2 cut(s) 165, 303
BcoDI GTCTC 1 cut(s) 13
BfaI CTAG 1 cut(s) 101
BfmI CTRYAG 1 cut(s) 117
BfuAI ACCTGC 1 cut(s) 412
BglII AGATCT 1 cut(s) 592
Bme1390I CCNGG 2 cut(s) 165, 303
Bme18I GGWCC 2 cut(s) 59, 701
BmeT110I CYCGRG 2 cut(s) 583, 608
BmgT120I GGNCC 2 cut(s) 59, 701
BmiI GGNNCC 1 cut(s) 702
BmrFI CCNGG 2 cut(s) 165, 303
Bpu10I CCTNAGC 1 cut(s) 375
Bpu14I TTCGAA 1 cut(s) 712
BpuEI CTTGAG 1 cut(s) 197
BsaWI WCCGGW 1 cut(s) 573
Bsc4I CCNNNNNNNGG 1 cut(s) 470
Bse1I ACTGG 3 cut(s) 61, 164, 365
Bse21I CCTNAGG 1 cut(s) 633
BseAI TCCGGA 1 cut(s) 573
BseBI CCWGG 2 cut(s) 165, 303
BseGI GGATG 1 cut(s) 298
BseLI CCNNNNNNNGG 1 cut(s) 470
BseMII CTCAG 2 cut(s) 366, 647
BseNI ACTGG 3 cut(s) 61, 164, 365
BseYI CCCAGC 1 cut(s) 445
BsgI GTGCAG 2 cut(s) 547, 612
Bsh1236I CGCG 1 cut(s) 93
BshFI GGCC 1 cut(s) 163
BsiHKCI CYCGRG 2 cut(s) 583, 608
BsiSI CCGG 1 cut(s) 574
BslI CCNNNNNNNGG 1 cut(s) 470
BsmAI GTCTC 1 cut(s) 13
BsnI GGCC 1 cut(s) 163
BsoBI CYCGRG 2 cut(s) 583, 608
Bsp119I TTCGAA 1 cut(s) 712
Bsp13I TCCGGA 1 cut(s) 573
Bsp1407I TGTACA 1 cut(s) 693
Bsp143I GATC 4 cut(s) 190, 385, 592, 604
BspANI GGCC 1 cut(s) 163
BspCNI CTCAG 2 cut(s) 367, 646
BspEI TCCGGA 1 cut(s) 573
BspFNI CGCG 1 cut(s) 93
BspLI GGNNCC 1 cut(s) 702
BspMAI CTGCAG 1 cut(s) 121
BspMI ACCTGC 1 cut(s) 412
BspPI GGATC 2 cut(s) 198, 380
BspT104I TTCGAA 1 cut(s) 712
BsrGI TGTACA 1 cut(s) 693
BsrI ACTGG 3 cut(s) 61, 164, 365
BssMI GATC 4 cut(s) 190, 385, 592, 604
Bst2UI CCWGG 2 cut(s) 165, 303
Bst4CI ACNGT 2 cut(s) 313, 454
Bst6I CTCTTC 1 cut(s) 645
BstAPI GCANNNNNTGC 1 cut(s) 404
BstAUI TGTACA 1 cut(s) 693
BstBI TTCGAA 1 cut(s) 712
BstC8I GCNNGC 3 cut(s) 117, 266, 381
BstDEI CTNAG 3 cut(s) 375, 526, 633
BstF5I GGATG 1 cut(s) 298
BstFNI CGCG 1 cut(s) 93
BstKTI GATC 4 cut(s) 193, 388, 595, 607
BstMAI GTCTC 1 cut(s) 13
BstMBI GATC 4 cut(s) 190, 385, 592, 604
BstMWI GCNNNNNNNGC 1 cut(s) 404
BstNI CCWGG 2 cut(s) 165, 303
BstNSI RCATGY 1 cut(s) 268
BstSCI CCNGG 2 cut(s) 163, 301
BstSFI CTRYAG 1 cut(s) 117
BstUI CGCG 1 cut(s) 93
BstX2I RGATCY 1 cut(s) 592
BstYI RGATCY 1 cut(s) 592
Bsu36I CCTNAGG 1 cut(s) 633
BsuRI GGCC 1 cut(s) 163
BtsCI GGATG 1 cut(s) 298
BtsI GCAGTG 3 cut(s) 200, 559, 624
BtsIMutI CAGTG 3 cut(s) 200, 559, 624
BveI ACCTGC 1 cut(s) 412
Cac8I GCNNGC 3 cut(s) 117, 266, 381
CaiI CAGNNNCTG 1 cut(s) 202
Cfr13I GGNCC 2 cut(s) 59, 701
Csp6I GTAC 4 cut(s) 152, 336, 371, 694
CviAII CATG 2 cut(s) 230, 265
CviQI GTAC 4 cut(s) 152, 336, 371, 694
DdeI CTNAG 3 cut(s) 375, 526, 633
DpnI GATC 4 cut(s) 192, 387, 594, 606
DpnII GATC 4 cut(s) 190, 385, 592, 604
EaeI YGGCCR 1 cut(s) 161
Eam1104I CTCTTC 1 cut(s) 645
EarI CTCTTC 1 cut(s) 645
Eco47I GGWCC 2 cut(s) 59, 701
Eco81I CCTNAGG 1 cut(s) 633
Eco88I CYCGRG 2 cut(s) 583, 608
EcoO109I RGGNCCY 1 cut(s) 701
EcoRII CCWGG 2 cut(s) 163, 301
FaeI CATG 2 cut(s) 233, 268
FatI CATG 2 cut(s) 229, 264
FauNDI CATATG 1 cut(s) 355
FblI GTMKAC 1 cut(s) 556
FokI GGATG 1 cut(s) 285
FspBI CTAG 1 cut(s) 101
GsaI CCCAGC 1 cut(s) 449
HaeIII GGCC 1 cut(s) 163
HapII CCGG 1 cut(s) 574
Hin1II CATG 2 cut(s) 233, 268
HincII GTYRAC 1 cut(s) 557
HindII GTYRAC 1 cut(s) 557
HinfI GANTC 4 cut(s) 21, 255, 621, 679
HpaII CCGG 1 cut(s) 574
HphI GGTGA 2 cut(s) 42, 649
Hpy166II GTNNAC 1 cut(s) 557
Hpy188I TCNGA 5 cut(s) 18, 70, 419, 547, 684
Hpy188III TCNNGA 5 cut(s) 80, 574, 585, 608, 665
Hpy8I GTNNAC 1 cut(s) 557
HpyAV CCTTC 2 cut(s) 282, 299
HpyCH4III ACNGT 2 cut(s) 313, 454
HpyCH4V TGCA 6 cut(s) 36, 119, 223, 264, 564, 629
HpyF10VI GCNNNNNNNGC 1 cut(s) 404
HpyF3I CTNAG 3 cut(s) 375, 526, 633
Hsp92II CATG 2 cut(s) 233, 268
Kpn2I TCCGGA 1 cut(s) 573
Kzo9I GATC 4 cut(s) 190, 385, 592, 604
LmnI GCTCC 2 cut(s) 442, 535
MaeI CTAG 1 cut(s) 101
MaeIII GTNAC 3 cut(s) 198, 622, 637
MalI GATC 4 cut(s) 192, 387, 594, 606
MboI GATC 4 cut(s) 190, 385, 592, 604
MboII GAAGA 4 cut(s) 83, 534, 560, 662
MfeI CAATTG 1 cut(s) 146
MflI RGATCY 1 cut(s) 592
MlsI TGGCCA 1 cut(s) 163
MluCI AATT 2 cut(s) 146, 349
MluNI TGGCCA 1 cut(s) 163
MlyI GAGTC 2 cut(s) 15, 630
MmeI TCCRAC 1 cut(s) 413
MnlI CCTC 7 cut(s) 72, 133, 286, 592, 642, 672, 680
Mox20I TGGCCA 1 cut(s) 163
MroI TCCGGA 1 cut(s) 573
MroXI GAANNNNTTC 2 cut(s) 87, 654
MscI TGGCCA 1 cut(s) 163
MseI TTAA 2 cut(s) 96, 348
MslI CAYNNNNRTG 1 cut(s) 228
Msp20I TGGCCA 1 cut(s) 163
MspI CCGG 1 cut(s) 574
MspR9I CCNGG 2 cut(s) 165, 303
MunI CAATTG 1 cut(s) 146
MvaI CCWGG 2 cut(s) 165, 303
MvnI CGCG 1 cut(s) 93
MwoI GCNNNNNNNGC 1 cut(s) 404
NdeI CATATG 1 cut(s) 355
NdeII GATC 4 cut(s) 190, 385, 592, 604
NlaIII CATG 2 cut(s) 233, 268
NlaIV GGNNCC 1 cut(s) 702
NmuCI GTSAC 3 cut(s) 198, 622, 637
NspI RCATGY 1 cut(s) 268
NspV TTCGAA 1 cut(s) 712
PaeI GCATGC 1 cut(s) 268
PaeR7I CTCGAG 2 cut(s) 583, 608
PdmI GAANNNNTTC 2 cut(s) 87, 654
PfeI GAWTC 2 cut(s) 255, 679
PfoI TCCNGGA 1 cut(s) 301
PleI GAGTC 2 cut(s) 15, 629
PpsI GAGTC 2 cut(s) 15, 629
PpuMI RGGWCCY 1 cut(s) 701
Psp5II RGGWCCY 1 cut(s) 701
Psp6I CCWGG 2 cut(s) 163, 301
PspFI CCCAGC 1 cut(s) 445
PspGI CCWGG 2 cut(s) 163, 301
PspN4I GGNNCC 1 cut(s) 702
PspPI GGNCC 2 cut(s) 59, 701
PspPPI RGGWCCY 1 cut(s) 701
PstI CTGCAG 1 cut(s) 121
PstNI CAGNNNCTG 1 cut(s) 202
PsuI RGATCY 1 cut(s) 592
RsaI GTAC 4 cut(s) 153, 337, 372, 695
RsaNI GTAC 4 cut(s) 152, 336, 371, 694
RseI CAYNNNNRTG 1 cut(s) 228
SalI GTCGAC 1 cut(s) 555
SaqAI TTAA 2 cut(s) 96, 348
Sau3AI GATC 4 cut(s) 190, 385, 592, 604
Sau96I GGNCC 2 cut(s) 59, 701
SchI GAGTC 2 cut(s) 15, 630
ScrFI CCNGG 2 cut(s) 165, 303
SfcI CTRYAG 1 cut(s) 117
Sfr274I CTCGAG 2 cut(s) 583, 608
SfuI TTCGAA 1 cut(s) 712
SinI GGWCC 2 cut(s) 59, 701
SlaI CTCGAG 2 cut(s) 583, 608
SmiMI CAYNNNNRTG 1 cut(s) 228
SmlI CTYRAG 3 cut(s) 176, 583, 608
SmoI CTYRAG 3 cut(s) 176, 583, 608
SphI GCATGC 1 cut(s) 268
Sse9I AATT 2 cut(s) 146, 349
SspMI CTAG 1 cut(s) 101
StyD4I CCNGG 2 cut(s) 163, 301
TaaI ACNGT 2 cut(s) 313, 454
TaqI TCGA 5 cut(s) 81, 556, 584, 609, 712
TasI AATT 2 cut(s) 146, 349
TatI WGTACW 1 cut(s) 693
TfiI GAWTC 2 cut(s) 255, 679
Tru1I TTAA 2 cut(s) 96, 348
Tru9I TTAA 2 cut(s) 96, 348
TscAI CASTG 3 cut(s) 207, 566, 631
TseFI GTSAC 3 cut(s) 198, 622, 637
Tsp45I GTSAC 3 cut(s) 198, 622, 637
TspDTI ATGAA 2 cut(s) 281, 342
TspRI CASTG 3 cut(s) 207, 566, 631
VpaK11BI GGWCC 2 cut(s) 59, 701
XceI RCATGY 1 cut(s) 268
XhoI CTCGAG 2 cut(s) 583, 608
XmiI GTMKAC 1 cut(s) 556
XmnI GAANNNNTTC 2 cut(s) 87, 654
XspI CTAG 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.