Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004451

Physical Location & Seq

Genomic Coordinates Forward (+)

9923585 .. 9931164

Gene Structure 7580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G116600.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGCCATATTATATTCAGAGACTCTATAATGTTTGCAAATCATCATTTTTGCCGAATGGACCTGTGTCAGAAGAAGCACTCGAAAAAGTTCGTGTTAAACTAGAGAAAATTAAGCCTGCTGATGTAGGTCTCGAACAGGAGGCACAGTTGGTGCGTAATTGGTCAGGTTCTATGCTTGAGCGTAATGGGGATCAGCAGTCACTGCCACCAATCAAGTACTTGCATTTACATGAGTGCGATAGCTTCTCTATGGGAATTTTTTGCATGCCCCCTTCCTCTATCATACCCCTTCATAATCATCCTGGAATGACTGTGTTGAGCAAGCTTATATATGGTACATTATGTGTTAATTCATATGACTGGCTTGATTTTCCTGGTCCTGCCGATCCATCAGAAGCTAAACCTGCAAAGCTGGTCAAAGATACTGAGATGACAGCACCATGCCCACCAACAGTTCTTTATCCAACAACTGGAGGCAATATCCATAGTTTTAGAGCTCTAACTCCTTGTGCCATCTTTGACATCCTTGCGCCGCCTTACTCCTCTGAAGATGGACGGCACTGCACGTATTTCCGGAAGTCCTCAAGAAAAGATCTGCCTGGTTATCTTGAGTTTGAAGGAGTTACAGAGCCACAAGTAACTTGGTTAGAAGAGTTTCAACCTCCCGACAACTTTGTGATTCGCAGAGGGCTGTACAAGGGCCCTGTTATTAGAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0008152 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00430 ko01100 map00430 map01100

Pfam Domains

Protein Families

PCO_ADO

Protein Analysis

240

Amino Acids

26.92

Weight (kDa)

6.08

Isoelectric Point (pI)

51.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42670 AT2G42670 AT2G42670 AT3G58670 AT3G58670 AT3G58670 AT3G58670
fragaria_vesca	FvH4_6g27560 FvH4_6g27560 FvH4_6g27560
malus_domestica	MD09G1236500.v1.1 MD17G1266100.v1.1
prunus_persica	Prupe.3G116600_v2.0.a1 Prupe.3G116600_v2.0.a1 Prupe.3G116600_v2.0.a1 Prupe.3G116600_v2.0.a1 Prupe.3G116600_v2.0.a1 Prupe.3G116600_v2.0.a1
pyrus_communis	pycom09g15490 pycom17g26570
rosa_chinensis	RchiOBHm_Chr2g0129981
rosa_laevigata	RLG00000019117
rosa_multiflora	Rmu_sc0005625.1_g000009
rosa_roxburghii	Rroxscaffold_2G00114180
rosa_rugosa	Rorug02G0290500 Rorug02G0290600 Rorug02G0290700
rosa_samantha	Rh2AG341900 Rh2BG350100 Rh2CG329300 Rh2DG368200
rosa_wichuraiana	Rw2G027720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	412
AccB7I	CCANNNNNTGG	1 cut(s)	470
AccIII	TCCGGA	1 cut(s)	573
AciI	CCGC	1 cut(s)	533
AclWI	GGATC	2 cut(s)	198, 380
AcsI	RAATTY	1 cut(s)	255
AcuI	CTGAAG	1 cut(s)	567
AfaI	GTAC	3 cut(s)	218, 337, 695
AfiI	CCNNNNNNNGG	1 cut(s)	470
AgsI	TTSAA	2 cut(s)	617, 659
AjnI	CCWGG	3 cut(s)	301, 373, 598
AluBI	AGCT	5 cut(s)	243, 325, 398, 412, 497
AluI	AGCT	5 cut(s)	243, 325, 398, 412, 497
Alw21I	GWGCWC	1 cut(s)	499
Alw26I	GTCTC	2 cut(s)	13, 134
AlwI	GGATC	2 cut(s)	198, 380
AlwNI	CAGNNNCTG	1 cut(s)	202
Aor13HI	TCCGGA	1 cut(s)	573
AoxI	GGCC	1 cut(s)	700
ApaI	GGGCCC	1 cut(s)	704
ApoI	RAATTY	1 cut(s)	255
Asp700I	GAANNNNTTC	2 cut(s)	87, 654
AspLEI	GCGC	1 cut(s)	532
AspS9I	GGNCC	4 cut(s)	59, 377, 700, 701
AvaII	GGWCC	2 cut(s)	59, 377
BaeGI	GKGCMC	1 cut(s)	704
BanII	GRGCYC	2 cut(s)	499, 704
Bbv12I	GWGCWC	1 cut(s)	499
BccI	CCATC	3 cut(s)	397, 521, 545
BceAI	ACGGC	1 cut(s)	572
BciT130I	CCWGG	3 cut(s)	303, 375, 600
BcoDI	GTCTC	2 cut(s)	13, 134
BfaI	CTAG	1 cut(s)	101
BfuAI	ACCTGC	1 cut(s)	412
BglII	AGATCT	1 cut(s)	592
BisI	GCNGC	1 cut(s)	533
BlsI	GCNGC	1 cut(s)	534
BmcAI	AGTACT	1 cut(s)	218
Bme1390I	CCNGG	3 cut(s)	303, 375, 600
Bme18I	GGWCC	2 cut(s)	59, 377
BmgT120I	GGNCC	4 cut(s)	59, 377, 700, 701
BmiI	GGNNCC	1 cut(s)	702
BmrFI	CCNGG	3 cut(s)	303, 375, 600
BoxI	GACNNNNGTC	1 cut(s)	64
BpmI	CTGGAG	1 cut(s)	492
BpuEI	CTTGAG	3 cut(s)	197, 568, 629
BsaAI	YACGTR	1 cut(s)	567
BsaI	GGTCTC	1 cut(s)	134
BsaWI	WCCGGW	1 cut(s)	573
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	1 cut(s)	470
Bse1I	ACTGG	2 cut(s)	365, 475
BseAI	TCCGGA	1 cut(s)	573
BseBI	CCWGG	3 cut(s)	303, 375, 600
BseGI	GGATG	2 cut(s)	298, 522
BseLI	CCNNNNNNNGG	1 cut(s)	470
BseMII	CTCAG	1 cut(s)	417
BseNI	ACTGG	2 cut(s)	365, 475
BseRI	GAGGAG	1 cut(s)	532
BseSI	GKGCMC	1 cut(s)	704
BsgI	GTGCAG	1 cut(s)	547
BshFI	GGCC	1 cut(s)	702
BsiHKAI	GWGCWC	1 cut(s)	499
BsiSI	CCGG	1 cut(s)	574
BslI	CCNNNNNNNGG	1 cut(s)	470
BsmAI	GTCTC	2 cut(s)	13, 134
BsnI	GGCC	1 cut(s)	702
Bso31I	GGTCTC	1 cut(s)	134
Bsp120I	GGGCCC	1 cut(s)	700
Bsp1286I	GDGCHC	2 cut(s)	499, 704
Bsp13I	TCCGGA	1 cut(s)	573
Bsp1407I	TGTACA	1 cut(s)	693
Bsp143I	GATC	3 cut(s)	190, 385, 592
BspACI	CCGC	1 cut(s)	533
BspANI	GGCC	1 cut(s)	702
BspCNI	CTCAG	1 cut(s)	418
BspEI	TCCGGA	1 cut(s)	573
BspLI	GGNNCC	1 cut(s)	702
BspMI	ACCTGC	1 cut(s)	412
BspPI	GGATC	2 cut(s)	198, 380
BspTNI	GGTCTC	1 cut(s)	134
BsrGI	TGTACA	1 cut(s)	693
BsrI	ACTGG	2 cut(s)	365, 475
BssMI	GATC	3 cut(s)	190, 385, 592
Bst2UI	CCWGG	3 cut(s)	303, 375, 600
Bst4CI	ACNGT	3 cut(s)	147, 313, 454
Bst6I	CTCTTC	1 cut(s)	645
BstAPI	GCANNNNNTGC	1 cut(s)	202
BstAUI	TGTACA	1 cut(s)	693
BstBAI	YACGTR	1 cut(s)	567
BstC8I	GCNNGC	3 cut(s)	117, 266, 323
BstDEI	CTNAG	1 cut(s)	426
BstF5I	GGATG	2 cut(s)	298, 522
BstHHI	GCGC	1 cut(s)	532
BstKTI	GATC	3 cut(s)	193, 388, 595
BstMAI	GTCTC	2 cut(s)	13, 134
BstMBI	GATC	3 cut(s)	190, 385, 592
BstMWI	GCNNNNNNNGC	2 cut(s)	202, 404
BstNI	CCWGG	3 cut(s)	303, 375, 600
BstNSI	RCATGY	1 cut(s)	268
BstPAI	GACNNNNGTC	1 cut(s)	64
BstSCI	CCNGG	3 cut(s)	301, 373, 598
BstSLI	GKGCMC	1 cut(s)	704
BstX2I	RGATCY	1 cut(s)	592
BstYI	RGATCY	1 cut(s)	592
BsuRI	GGCC	1 cut(s)	702
BtsCI	GGATG	2 cut(s)	298, 522
BtsI	GCAGTG	2 cut(s)	200, 559
BtsIMutI	CAGTG	2 cut(s)	200, 559
BveI	ACCTGC	1 cut(s)	412
Cac8I	GCNNGC	3 cut(s)	117, 266, 323
CaiI	CAGNNNCTG	1 cut(s)	202
CfoI	GCGC	1 cut(s)	532
Cfr13I	GGNCC	4 cut(s)	59, 377, 700, 701
Csp6I	GTAC	3 cut(s)	217, 336, 694
CviAII	CATG	3 cut(s)	230, 265, 441
CviQI	GTAC	3 cut(s)	217, 336, 694
DdeI	CTNAG	1 cut(s)	426
DpnI	GATC	3 cut(s)	192, 387, 594
DpnII	GATC	3 cut(s)	190, 385, 592
Eam1104I	CTCTTC	1 cut(s)	645
EarI	CTCTTC	1 cut(s)	645
Ecl136II	GAGCTC	1 cut(s)	497
Eco24I	GRGCYC	2 cut(s)	499, 704
Eco31I	GGTCTC	1 cut(s)	134
Eco47I	GGWCC	2 cut(s)	59, 377
Eco53kI	GAGCTC	1 cut(s)	497
Eco57I	CTGAAG	1 cut(s)	567
EcoICRI	GAGCTC	1 cut(s)	497
EcoO109I	RGGNCCY	2 cut(s)	700, 701
EcoRII	CCWGG	3 cut(s)	301, 373, 598
EcoT38I	GRGCYC	2 cut(s)	499, 704
FaeI	CATG	3 cut(s)	233, 268, 444
FatI	CATG	3 cut(s)	229, 264, 440
FauNDI	CATATG	1 cut(s)	355
Fnu4HI	GCNGC	1 cut(s)	533
FokI	GGATG	2 cut(s)	285, 509
FriOI	GRGCYC	2 cut(s)	499, 704
Fsp4HI	GCNGC	1 cut(s)	533
FspBI	CTAG	1 cut(s)	101
GlaI	GCGC	1 cut(s)	531
GluI	GCNGC	1 cut(s)	533
GsuI	CTGGAG	1 cut(s)	492
HaeIII	GGCC	1 cut(s)	702
HapII	CCGG	1 cut(s)	574
HhaI	GCGC	1 cut(s)	532
Hin1II	CATG	3 cut(s)	233, 268, 444
Hin6I	GCGC	1 cut(s)	530
HinP1I	GCGC	1 cut(s)	530
HindIII	AAGCTT	1 cut(s)	323
HinfI	GANTC	2 cut(s)	21, 679
HpaII	CCGG	1 cut(s)	574
Hpy188I	TCNGA	4 cut(s)	18, 70, 394, 547
Hpy188III	TCNNGA	5 cut(s)	131, 574, 585, 608, 665
HpyAV	CCTTC	3 cut(s)	282, 299, 611
HpyCH4III	ACNGT	3 cut(s)	147, 313, 454
HpyCH4IV	ACGT	1 cut(s)	566
HpyCH4V	TGCA	5 cut(s)	36, 223, 264, 407, 564
HpyF10VI	GCNNNNNNNGC	2 cut(s)	202, 404
HpyF3I	CTNAG	1 cut(s)	426
HpySE526I	ACGT	1 cut(s)	566
Hsp92II	CATG	3 cut(s)	233, 268, 444
HspAI	GCGC	1 cut(s)	530
Kpn2I	TCCGGA	1 cut(s)	573
Kzo9I	GATC	3 cut(s)	190, 385, 592
MaeI	CTAG	1 cut(s)	101
MaeII	ACGT	1 cut(s)	566
MaeIII	GTNAC	3 cut(s)	198, 622, 637
MalI	GATC	3 cut(s)	192, 387, 594
MboI	GATC	3 cut(s)	190, 385, 592
MboII	GAAGA	3 cut(s)	83, 560, 662
MflI	RGATCY	1 cut(s)	592
MhlI	GDGCHC	2 cut(s)	499, 704
MluCI	AATT	4 cut(s)	108, 157, 255, 349
MlyI	GAGTC	1 cut(s)	15
MmeI	TCCRAC	1 cut(s)	488
MnlI	CCTC	7 cut(s)	133, 286, 467, 553, 592, 672, 680
MroI	TCCGGA	1 cut(s)	573
MroXI	GAANNNNTTC	2 cut(s)	87, 654
MseI	TTAA	3 cut(s)	96, 111, 348
MslI	CAYNNNNRTG	1 cut(s)	228
MspI	CCGG	1 cut(s)	574
MspR9I	CCNGG	3 cut(s)	303, 375, 600
MvaI	CCWGG	3 cut(s)	303, 375, 600
MwoI	GCNNNNNNNGC	2 cut(s)	202, 404
NdeI	CATATG	1 cut(s)	355
NdeII	GATC	3 cut(s)	190, 385, 592
NlaIII	CATG	3 cut(s)	233, 268, 444
NlaIV	GGNNCC	1 cut(s)	702
NmuCI	GTSAC	1 cut(s)	198
NspI	RCATGY	1 cut(s)	268
PaeI	GCATGC	1 cut(s)	268
PdmI	GAANNNNTTC	2 cut(s)	87, 654
PfeI	GAWTC	1 cut(s)	679
PflMI	CCANNNNNTGG	1 cut(s)	470
PfoI	TCCNGGA	1 cut(s)	301
PkrI	GCNGC	1 cut(s)	534
PleI	GAGTC	1 cut(s)	15
PpsI	GAGTC	1 cut(s)	15
Ppu21I	YACGTR	1 cut(s)	567
PshAI	GACNNNNGTC	1 cut(s)	64
Psp124BI	GAGCTC	1 cut(s)	499
Psp6I	CCWGG	3 cut(s)	301, 373, 598
PspGI	CCWGG	3 cut(s)	301, 373, 598
PspN4I	GGNNCC	1 cut(s)	702
PspOMI	GGGCCC	1 cut(s)	700
PspPI	GGNCC	4 cut(s)	59, 377, 700, 701
PstNI	CAGNNNCTG	1 cut(s)	202
PsuI	RGATCY	1 cut(s)	592
RsaI	GTAC	3 cut(s)	218, 337, 695
RsaNI	GTAC	3 cut(s)	217, 336, 694
RseI	CAYNNNNRTG	1 cut(s)	228
SacI	GAGCTC	1 cut(s)	499
SaqAI	TTAA	3 cut(s)	96, 111, 348
SatI	GCNGC	1 cut(s)	533
Sau3AI	GATC	3 cut(s)	190, 385, 592
Sau96I	GGNCC	4 cut(s)	59, 377, 700, 701
ScaI	AGTACT	1 cut(s)	218
SchI	GAGTC	1 cut(s)	15
ScrFI	CCNGG	3 cut(s)	303, 375, 600
SduI	GDGCHC	2 cut(s)	499, 704
SinI	GGWCC	2 cut(s)	59, 377
SmiMI	CAYNNNNRTG	1 cut(s)	228
SmlI	CTYRAG	3 cut(s)	176, 583, 608
SmoI	CTYRAG	3 cut(s)	176, 583, 608
SphI	GCATGC	1 cut(s)	268
Sse9I	AATT	4 cut(s)	108, 157, 255, 349
SsiI	CCGC	1 cut(s)	533
SspMI	CTAG	1 cut(s)	101
SstI	GAGCTC	1 cut(s)	499
StyD4I	CCNGG	3 cut(s)	301, 373, 598
TaaI	ACNGT	3 cut(s)	147, 313, 454
TaiI	ACGT	1 cut(s)	569
TaqI	TCGA	2 cut(s)	81, 132
TasI	AATT	4 cut(s)	108, 157, 255, 349
TatI	WGTACW	2 cut(s)	216, 693
TauI	GCSGC	1 cut(s)	535
TfiI	GAWTC	1 cut(s)	679
Tru1I	TTAA	3 cut(s)	96, 111, 348
Tru9I	TTAA	3 cut(s)	96, 111, 348
TscAI	CASTG	2 cut(s)	207, 566
TseFI	GTSAC	1 cut(s)	198
Tsp45I	GTSAC	1 cut(s)	198
TspDTI	ATGAA	2 cut(s)	281, 342
TspRI	CASTG	2 cut(s)	207, 566
Van91I	CCANNNNNTGG	1 cut(s)	470
VpaK11BI	GGWCC	2 cut(s)	59, 377
XapI	RAATTY	1 cut(s)	255
XceI	RCATGY	1 cut(s)	268
XcmI	CCANNNNNNNNNTGG	1 cut(s)	639
XmnI	GAANNNNTTC	2 cut(s)	87, 654
XspI	CTAG	1 cut(s)	101
ZrmI	AGTACT	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.