Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0004451

Physical Location & Seq

Genomic Coordinates Forward (+)

24843402 .. 24847882

Gene Structure 4481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g26570.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGCCATATTATATTCAGAGACTCTATAATGTATGCAAATCTTCATATACGCCAACTGGACCTTTGTCAGAAGAAGCCCTGGAAAGAGTTCGTGTCAAACTAGAGAAAATTAAGCCTGCAGATGTAGGTCTTGAACAGGAGGCACAAGTGGTGCGTAATTGGTCAGGTGCTATGCCTGAGCGTAATGGGATTCAGCAATCACTGCCACCAATCAAATACTTGCATTTACATGAGTGTGATAGCTTTTCTATAGGAATTTTTTGCATGCCGCCTTCCTCTATCATACCTCTTCATAATCATCCTGGAATGACTGTGTTGAGCAAGCTTCTATATGGTACATTACGTGTTATTTCATATGACTGGGTTGATTTTCCTGGCCCTGCCGATCCATCAGAAGCTAGACCTGCAAAGCTGGTCAAAGACACTGACATGACCGCGCCCTGTCCACCAACAGTTCTTTACCCCACAACTGGAGGCAATATCCATAGCTTTAGAGCTATAACTCCCTGCGCCATCTTTGACATCCTAGCTCCGCCTTACTCTTCTGAAGAAGGACGACACTGCAGTTATTACCGGAAGTCCTCCAGAAGAGATCTGCCTGCTGATCTTAAGCTCGATGGAGTTATAGAGCCCCAAGTGACTTGGTTAGAAGAGTTTCAACCTCCCGAAAACTTTGTGATTCGCAGAGGGCTATACAGGGGCCCCGTTATTAGAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0008152 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00430 ko01100 map00430 map01100

Pfam Domains

Protein Families

PCO_ADO

Protein Analysis

240

Amino Acids

26.96

Weight (kDa)

7.0

Isoelectric Point (pI)

55.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42670 AT2G42670 AT2G42670 AT3G58670 AT3G58670 AT3G58670 AT3G58670
fragaria_vesca	FvH4_6g27560 FvH4_6g27560 FvH4_6g27560
malus_domestica	MD09G1236500.v1.1 MD17G1266100.v1.1
prunus_persica	Prupe.3G116600_v2.0.a1 Prupe.3G116600_v2.0.a1 Prupe.3G116600_v2.0.a1 Prupe.3G116600_v2.0.a1 Prupe.3G116600_v2.0.a1 Prupe.3G116600_v2.0.a1
pyrus_communis	pycom09g15490 pycom17g26570
rosa_chinensis	RchiOBHm_Chr2g0129981
rosa_laevigata	RLG00000019117
rosa_multiflora	Rmu_sc0005625.1_g000009
rosa_roxburghii	Rroxscaffold_2G00114180
rosa_rugosa	Rorug02G0290500 Rorug02G0290600 Rorug02G0290700
rosa_samantha	Rh2AG341900 Rh2BG350100 Rh2CG329300 Rh2DG368200
rosa_wichuraiana	Rw2G027720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	412
AccII	CGCG	1 cut(s)	437
AciI	CCGC	3 cut(s)	269, 435, 533
AclWI	GGATC	1 cut(s)	380
AcsI	RAATTY	1 cut(s)	255
AcuI	CTGAAG	1 cut(s)	567
AfaI	GTAC	1 cut(s)	337
AfiI	CCNNNNNNNGG	1 cut(s)	470
AflII	CTTAAG	1 cut(s)	608
AflIII	ACRYGT	1 cut(s)	343
AgsI	TTSAA	2 cut(s)	134, 659
AjnI	CCWGG	3 cut(s)	78, 301, 373
AluBI	AGCT	8 cut(s)	243, 325, 398, 412, 489, 497, 530, 613
AluI	AGCT	8 cut(s)	243, 325, 398, 412, 489, 497, 530, 613
Alw26I	GTCTC	1 cut(s)	13
AlwI	GGATC	1 cut(s)	380
AoxI	GGCC	2 cut(s)	376, 700
ApaI	GGGCCC	1 cut(s)	704
ApoI	RAATTY	1 cut(s)	255
Asp700I	GAANNNNTTC	2 cut(s)	87, 654
AspLEI	GCGC	2 cut(s)	439, 512
AspS9I	GGNCC	4 cut(s)	59, 377, 700, 701
AvaII	GGWCC	1 cut(s)	59
BaeGI	GKGCMC	1 cut(s)	704
BanII	GRGCYC	2 cut(s)	633, 704
BccI	CCATC	3 cut(s)	397, 521, 611
BciT130I	CCWGG	3 cut(s)	80, 303, 375
BcoDI	GTCTC	1 cut(s)	13
BfaI	CTAG	3 cut(s)	101, 399, 527
BfmI	CTRYAG	3 cut(s)	117, 249, 562
BfrI	CTTAAG	1 cut(s)	608
BfuAI	ACCTGC	1 cut(s)	412
BglII	AGATCT	1 cut(s)	592
BisI	GCNGC	1 cut(s)	269
BlsI	GCNGC	1 cut(s)	270
Bme1390I	CCNGG	3 cut(s)	80, 303, 375
Bme18I	GGWCC	1 cut(s)	59
BmgT120I	GGNCC	4 cut(s)	59, 377, 700, 701
BmiI	GGNNCC	3 cut(s)	701, 702, 703
BmrFI	CCNGG	3 cut(s)	80, 303, 375
BmrI	ACTGGG	1 cut(s)	370
BmuI	ACTGGG	1 cut(s)	370
BoxI	GACNNNNGTC	1 cut(s)	64
BpmI	CTGGAG	2 cut(s)	492, 568
Bpu10I	CCTNAGC	1 cut(s)	177
BsaAI	YACGTR	1 cut(s)	344
BsaJI	CCNNGG	1 cut(s)	78
BsaWI	WCCGGW	1 cut(s)	573
Bsc4I	CCNNNNNNNGG	1 cut(s)	470
Bse1I	ACTGG	3 cut(s)	61, 365, 475
BseBI	CCWGG	3 cut(s)	80, 303, 375
BseDI	CCNNGG	1 cut(s)	78
BseGI	GGATG	2 cut(s)	298, 522
BseLI	CCNNNNNNNGG	1 cut(s)	470
BseMII	CTCAG	1 cut(s)	168
BseNI	ACTGG	3 cut(s)	61, 365, 475
BseSI	GKGCMC	1 cut(s)	704
Bsh1236I	CGCG	1 cut(s)	437
BshFI	GGCC	2 cut(s)	378, 702
BsiSI	CCGG	1 cut(s)	574
BslI	CCNNNNNNNGG	1 cut(s)	470
BsmAI	GTCTC	1 cut(s)	13
BsnI	GGCC	2 cut(s)	378, 702
Bsp120I	GGGCCC	1 cut(s)	700
Bsp1286I	GDGCHC	2 cut(s)	633, 704
Bsp143I	GATC	3 cut(s)	385, 592, 604
BspACI	CCGC	3 cut(s)	269, 435, 533
BspANI	GGCC	2 cut(s)	378, 702
BspCNI	CTCAG	1 cut(s)	169
BspFNI	CGCG	1 cut(s)	437
BspLI	GGNNCC	3 cut(s)	701, 702, 703
BspMAI	CTGCAG	2 cut(s)	121, 566
BspMI	ACCTGC	1 cut(s)	412
BspPI	GGATC	1 cut(s)	380
BspTI	CTTAAG	1 cut(s)	608
BsrI	ACTGG	3 cut(s)	61, 365, 475
BssECI	CCNNGG	1 cut(s)	78
BssMI	GATC	3 cut(s)	385, 592, 604
Bst2UI	CCWGG	3 cut(s)	80, 303, 375
Bst4CI	ACNGT	2 cut(s)	313, 454
Bst6I	CTCTTC	4 cut(s)	294, 547, 583, 645
BstAFI	CTTAAG	1 cut(s)	608
BstAPI	GCANNNNNTGC	1 cut(s)	202
BstBAI	YACGTR	1 cut(s)	344
BstC8I	GCNNGC	4 cut(s)	117, 266, 323, 600
BstDEI	CTNAG	1 cut(s)	177
BstF5I	GGATG	2 cut(s)	298, 522
BstFNI	CGCG	1 cut(s)	437
BstHHI	GCGC	2 cut(s)	439, 512
BstKTI	GATC	3 cut(s)	388, 595, 607
BstMAI	GTCTC	1 cut(s)	13
BstMBI	GATC	3 cut(s)	385, 592, 604
BstMWI	GCNNNNNNNGC	2 cut(s)	202, 404
BstNI	CCWGG	3 cut(s)	80, 303, 375
BstNSI	RCATGY	1 cut(s)	268
BstPAI	GACNNNNGTC	1 cut(s)	64
BstSCI	CCNGG	3 cut(s)	78, 301, 373
BstSFI	CTRYAG	3 cut(s)	117, 249, 562
BstSLI	GKGCMC	1 cut(s)	704
BstUI	CGCG	1 cut(s)	437
BstX2I	RGATCY	1 cut(s)	592
BstYI	RGATCY	1 cut(s)	592
BsuRI	GGCC	2 cut(s)	378, 702
BtsCI	GGATG	2 cut(s)	298, 522
BtsI	GCAGTG	2 cut(s)	200, 559
BtsIMutI	CAGTG	3 cut(s)	200, 423, 559
BveI	ACCTGC	1 cut(s)	412
Cac8I	GCNNGC	4 cut(s)	117, 266, 323, 600
CfoI	GCGC	2 cut(s)	439, 512
Cfr13I	GGNCC	4 cut(s)	59, 377, 700, 701
Csp6I	GTAC	1 cut(s)	336
CviAII	CATG	3 cut(s)	230, 265, 430
CviQI	GTAC	1 cut(s)	336
DdeI	CTNAG	1 cut(s)	177
DpnI	GATC	3 cut(s)	387, 594, 606
DpnII	GATC	3 cut(s)	385, 592, 604
Eam1104I	CTCTTC	4 cut(s)	294, 547, 583, 645
EarI	CTCTTC	4 cut(s)	294, 547, 583, 645
EciI	GGCGGA	1 cut(s)	522
Eco24I	GRGCYC	2 cut(s)	633, 704
Eco47I	GGWCC	1 cut(s)	59
Eco57I	CTGAAG	1 cut(s)	567
EcoO109I	RGGNCCY	2 cut(s)	700, 701
EcoRII	CCWGG	3 cut(s)	78, 301, 373
EcoT38I	GRGCYC	2 cut(s)	633, 704
FaeI	CATG	3 cut(s)	233, 268, 433
FatI	CATG	3 cut(s)	229, 264, 429
FauNDI	CATATG	1 cut(s)	355
Fnu4HI	GCNGC	1 cut(s)	269
FokI	GGATG	2 cut(s)	285, 509
FriOI	GRGCYC	2 cut(s)	633, 704
Fsp4HI	GCNGC	1 cut(s)	269
FspBI	CTAG	3 cut(s)	101, 399, 527
GlaI	GCGC	2 cut(s)	438, 511
GluI	GCNGC	1 cut(s)	269
GsuI	CTGGAG	2 cut(s)	492, 568
HaeIII	GGCC	2 cut(s)	378, 702
HapII	CCGG	1 cut(s)	574
HhaI	GCGC	2 cut(s)	439, 512
Hin1II	CATG	3 cut(s)	233, 268, 433
Hin6I	GCGC	2 cut(s)	437, 510
HinP1I	GCGC	2 cut(s)	437, 510
HindIII	AAGCTT	1 cut(s)	323
HinfI	GANTC	3 cut(s)	21, 190, 679
HpaII	CCGG	1 cut(s)	574
Hpy166II	GTNNAC	1 cut(s)	446
Hpy188I	TCNGA	4 cut(s)	18, 70, 394, 547
Hpy188III	TCNNGA	3 cut(s)	131, 585, 665
Hpy8I	GTNNAC	1 cut(s)	446
HpyAV	CCTTC	2 cut(s)	282, 545
HpyCH4III	ACNGT	2 cut(s)	313, 454
HpyCH4IV	ACGT	1 cut(s)	343
HpyCH4V	TGCA	6 cut(s)	36, 119, 223, 264, 407, 564
HpyF10VI	GCNNNNNNNGC	2 cut(s)	202, 404
HpyF3I	CTNAG	1 cut(s)	177
HpySE526I	ACGT	1 cut(s)	343
Hsp92II	CATG	3 cut(s)	233, 268, 433
HspAI	GCGC	2 cut(s)	437, 510
Kzo9I	GATC	3 cut(s)	385, 592, 604
LmnI	GCTCC	1 cut(s)	535
MaeI	CTAG	3 cut(s)	101, 399, 527
MaeII	ACGT	1 cut(s)	343
MaeIII	GTNAC	1 cut(s)	637
MalI	GATC	3 cut(s)	387, 594, 606
MboI	GATC	3 cut(s)	385, 592, 604
MboII	GAAGA	7 cut(s)	33, 83, 281, 534, 560, 600, 662
MflI	RGATCY	1 cut(s)	592
MhlI	GDGCHC	2 cut(s)	633, 704
MluCI	AATT	3 cut(s)	108, 157, 255
MlyI	GAGTC	1 cut(s)	15
MnlI	CCTC	7 cut(s)	133, 286, 297, 467, 592, 672, 680
MroXI	GAANNNNTTC	2 cut(s)	87, 654
MseI	TTAA	2 cut(s)	111, 609
MslI	CAYNNNNRTG	3 cut(s)	228, 234, 428
MspCI	CTTAAG	1 cut(s)	608
MspI	CCGG	1 cut(s)	574
MspR9I	CCNGG	3 cut(s)	80, 303, 375
MvaI	CCWGG	3 cut(s)	80, 303, 375
MvnI	CGCG	1 cut(s)	437
MwoI	GCNNNNNNNGC	2 cut(s)	202, 404
NdeI	CATATG	1 cut(s)	355
NdeII	GATC	3 cut(s)	385, 592, 604
NlaIII	CATG	3 cut(s)	233, 268, 433
NlaIV	GGNNCC	3 cut(s)	701, 702, 703
NmuCI	GTSAC	1 cut(s)	637
NspI	RCATGY	1 cut(s)	268
PaeI	GCATGC	1 cut(s)	268
PdmI	GAANNNNTTC	2 cut(s)	87, 654
PfeI	GAWTC	2 cut(s)	190, 679
PfoI	TCCNGGA	1 cut(s)	301
PkrI	GCNGC	1 cut(s)	270
PleI	GAGTC	1 cut(s)	15
PpsI	GAGTC	1 cut(s)	15
Ppu21I	YACGTR	1 cut(s)	344
PshAI	GACNNNNGTC	1 cut(s)	64
Psp6I	CCWGG	3 cut(s)	78, 301, 373
PspGI	CCWGG	3 cut(s)	78, 301, 373
PspN4I	GGNNCC	3 cut(s)	701, 702, 703
PspOMI	GGGCCC	1 cut(s)	700
PspPI	GGNCC	4 cut(s)	59, 377, 700, 701
PstI	CTGCAG	2 cut(s)	121, 566
PsuI	RGATCY	1 cut(s)	592
RsaI	GTAC	1 cut(s)	337
RsaNI	GTAC	1 cut(s)	336
RseI	CAYNNNNRTG	3 cut(s)	228, 234, 428
SaqAI	TTAA	2 cut(s)	111, 609
SatI	GCNGC	1 cut(s)	269
Sau3AI	GATC	3 cut(s)	385, 592, 604
Sau96I	GGNCC	4 cut(s)	59, 377, 700, 701
SchI	GAGTC	1 cut(s)	15
ScrFI	CCNGG	3 cut(s)	80, 303, 375
SduI	GDGCHC	2 cut(s)	633, 704
SfcI	CTRYAG	3 cut(s)	117, 249, 562
SinI	GGWCC	1 cut(s)	59
SmiMI	CAYNNNNRTG	3 cut(s)	228, 234, 428
SmlI	CTYRAG	1 cut(s)	608
SmoI	CTYRAG	1 cut(s)	608
SphI	GCATGC	1 cut(s)	268
Sse9I	AATT	3 cut(s)	108, 157, 255
SsiI	CCGC	3 cut(s)	269, 435, 533
SspMI	CTAG	3 cut(s)	101, 399, 527
StyD4I	CCNGG	3 cut(s)	78, 301, 373
TaaI	ACNGT	2 cut(s)	313, 454
TaiI	ACGT	1 cut(s)	346
TaqI	TCGA	1 cut(s)	615
TasI	AATT	3 cut(s)	108, 157, 255
TauI	GCSGC	1 cut(s)	271
TfiI	GAWTC	2 cut(s)	190, 679
Tru1I	TTAA	2 cut(s)	111, 609
Tru9I	TTAA	2 cut(s)	111, 609
TscAI	CASTG	3 cut(s)	207, 430, 566
TseFI	GTSAC	1 cut(s)	637
Tsp45I	GTSAC	1 cut(s)	637
TspDTI	ATGAA	3 cut(s)	33, 281, 342
TspRI	CASTG	3 cut(s)	207, 430, 566
Vha464I	CTTAAG	1 cut(s)	608
VpaK11BI	GGWCC	1 cut(s)	59
XapI	RAATTY	1 cut(s)	255
XceI	RCATGY	1 cut(s)	268
XmnI	GAANNNNTTC	2 cut(s)	87, 654
XspI	CTAG	3 cut(s)	101, 399, 527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.