Rh2DG368200

2-aminoethanethiol dioxygenase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0004451
Physical Location & Seq
Reverse (-)
52123073 .. 52125146
2074 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG368200.1

Sequence Viewer

Length: 471 bp
ATGGGAATCTTTTGCATGCCGCCTTCCTCTATCATACCTCTTCATAATCATCCAGGAATGACTGTGTTGAGCAAGCTTATATATGGTACTTTGCGTGTTAATTCATATGACTGGCATGATTTACCCGGGTCTGCTGATCCATCAGAAGCAAGACCGGCGAAACTGGTCAGAGATGATGAGATGACCGCTCCTTGCCCGGCAACAGTTCTCTATCCCACAAGTGGAGGCAACATCCATAGTTTCAAAGCTATAACTCCCTGTGCCATATTTGACATTCTAGCTCCACCTTATTCGTCTGAAGATGGTCGACACTGCACTTATTTCCGGAAGTCCTCAAGAAAAGATCTGCCTGGTGATGTTGAGTATGATGGAGTCACAGCTCCTCAAGTGACTTGGTTAGAAGAGTTTCAACCTCCCGACAACTTTGTGATTCGGAGAGGGCTCTACAGGGGTCCTGTTATTCGAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0008152 GO:0055114
KEGG Pathways
Metabolic & Signaling
ko00430 ko01100 map00430 map01100
Pfam Domains
Protein Families
PCO_ADO

Protein Analysis

156

Amino Acids

17.33

Weight (kDa)

6.18

Isoelectric Point (pI)

56.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCO_ADO PF07847 1 - 154 4.7e-61 PCO_ADO
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 188
AccI GTMKAC 1 cut(s) 307
AccIII TCCGGA 1 cut(s) 324
AciI CCGC 2 cut(s) 20, 186
AclWI GGATC 1 cut(s) 131
AcuI CTGAAG 1 cut(s) 318
AfaI GTAC 1 cut(s) 88
AfiI CCNNNNNNNGG 1 cut(s) 221
AgsI TTSAA 2 cut(s) 244, 410
AjnI CCWGG 2 cut(s) 52, 349
AluBI AGCT 4 cut(s) 76, 248, 281, 380
AluI AGCT 4 cut(s) 76, 248, 281, 380
AlwI GGATC 1 cut(s) 131
Ama87I CYCGRG 1 cut(s) 125
Aor13HI TCCGGA 1 cut(s) 324
Asp700I GAANNNNTTC 1 cut(s) 405
AspS9I GGNCC 1 cut(s) 452
AsuC2I CCSGG 3 cut(s) 126, 127, 197
AsuHPI GGTGA 1 cut(s) 365
AsuII TTCGAA 1 cut(s) 463
AvaI CYCGRG 1 cut(s) 125
AvaII GGWCC 1 cut(s) 452
BanII GRGCYC 1 cut(s) 444
BccI CCATC 3 cut(s) 148, 296, 362
BciT130I CCWGG 2 cut(s) 54, 351
BcnI CCSGG 3 cut(s) 126, 127, 197
BfaI CTAG 1 cut(s) 278
BfmI CTRYAG 1 cut(s) 445
BglII AGATCT 1 cut(s) 343
BisI GCNGC 1 cut(s) 20
BlsI GCNGC 1 cut(s) 21
Bme1390I CCNGG 5 cut(s) 54, 126, 127, 197, 351
Bme18I GGWCC 1 cut(s) 452
BmeT110I CYCGRG 1 cut(s) 125
BmgT120I GGNCC 1 cut(s) 452
BmiI GGNNCC 1 cut(s) 453
BmrFI CCNGG 5 cut(s) 54, 126, 127, 197, 351
Bpu14I TTCGAA 1 cut(s) 463
BpuEI CTTGAG 2 cut(s) 319, 369
BpuMI CCSGG 3 cut(s) 126, 127, 197
BsaJI CCNNGG 1 cut(s) 125
BsaWI WCCGGW 1 cut(s) 324
Bsc4I CCNNNNNNNGG 1 cut(s) 221
Bse118I RCCGGY 1 cut(s) 154
Bse1I ACTGG 2 cut(s) 116, 168
BseAI TCCGGA 1 cut(s) 324
BseBI CCWGG 2 cut(s) 54, 351
BseDI CCNNGG 1 cut(s) 125
BseGI GGATG 2 cut(s) 49, 231
BseLI CCNNNNNNNGG 1 cut(s) 221
BseNI ACTGG 2 cut(s) 116, 168
BseRI GAGGAG 1 cut(s) 372
BsgI GTGCAG 1 cut(s) 298
BsiHKCI CYCGRG 1 cut(s) 125
BsiSI CCGG 4 cut(s) 126, 155, 197, 325
BslI CCNNNNNNNGG 1 cut(s) 221
BsoBI CYCGRG 1 cut(s) 125
Bsp119I TTCGAA 1 cut(s) 463
Bsp1286I GDGCHC 1 cut(s) 444
Bsp13I TCCGGA 1 cut(s) 324
Bsp143I GATC 2 cut(s) 136, 343
BspACI CCGC 2 cut(s) 20, 186
BspEI TCCGGA 1 cut(s) 324
BspLI GGNNCC 1 cut(s) 453
BspPI GGATC 1 cut(s) 131
BspT104I TTCGAA 1 cut(s) 463
BsrBI CCGCTC 1 cut(s) 188
BsrFI RCCGGY 1 cut(s) 154
BsrI ACTGG 2 cut(s) 116, 168
BssAI RCCGGY 1 cut(s) 154
BssECI CCNNGG 1 cut(s) 125
BssMI GATC 2 cut(s) 136, 343
Bst2UI CCWGG 2 cut(s) 54, 351
Bst4CI ACNGT 2 cut(s) 64, 205
Bst6I CTCTTC 2 cut(s) 45, 396
BstBI TTCGAA 1 cut(s) 463
BstC8I GCNNGC 2 cut(s) 17, 74
BstF5I GGATG 2 cut(s) 49, 231
BstKTI GATC 2 cut(s) 139, 346
BstMBI GATC 2 cut(s) 136, 343
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstNI CCWGG 2 cut(s) 54, 351
BstNSI RCATGY 1 cut(s) 19
BstSCI CCNGG 5 cut(s) 52, 124, 125, 195, 349
BstSFI CTRYAG 1 cut(s) 445
BstX2I RGATCY 1 cut(s) 343
BstYI RGATCY 1 cut(s) 343
BtsCI GGATG 2 cut(s) 49, 231
BtsI GCAGTG 1 cut(s) 310
BtsIMutI CAGTG 1 cut(s) 310
Cac8I GCNNGC 2 cut(s) 17, 74
Cfr10I RCCGGY 1 cut(s) 154
Cfr13I GGNCC 1 cut(s) 452
Cfr9I CCCGGG 1 cut(s) 125
Csp6I GTAC 1 cut(s) 87
CviAII CATG 2 cut(s) 16, 116
CviJI RGCY 5 cut(s) 76, 248, 281, 380, 442
CviKI_1 RGCY 5 cut(s) 76, 248, 281, 380, 442
CviQI GTAC 1 cut(s) 87
DpnI GATC 2 cut(s) 138, 345
DpnII GATC 2 cut(s) 136, 343
Eam1104I CTCTTC 2 cut(s) 45, 396
EarI CTCTTC 2 cut(s) 45, 396
Eco24I GRGCYC 1 cut(s) 444
Eco47I GGWCC 1 cut(s) 452
Eco57I CTGAAG 1 cut(s) 318
Eco88I CYCGRG 1 cut(s) 125
EcoO109I RGGNCCY 1 cut(s) 452
EcoRII CCWGG 2 cut(s) 52, 349
EcoT38I GRGCYC 1 cut(s) 444
FaeI CATG 2 cut(s) 19, 119
FatI CATG 2 cut(s) 15, 115
FauNDI CATATG 1 cut(s) 106
FblI GTMKAC 1 cut(s) 307
Fnu4HI GCNGC 1 cut(s) 20
FokI GGATG 2 cut(s) 36, 218
FriOI GRGCYC 1 cut(s) 444
Fsp4HI GCNGC 1 cut(s) 20
FspBI CTAG 1 cut(s) 278
GluI GCNGC 1 cut(s) 20
HapII CCGG 4 cut(s) 126, 155, 197, 325
Hin1II CATG 2 cut(s) 19, 119
HincII GTYRAC 1 cut(s) 308
HindII GTYRAC 1 cut(s) 308
HindIII AAGCTT 1 cut(s) 74
HinfI GANTC 3 cut(s) 6, 372, 430
HpaII CCGG 4 cut(s) 126, 155, 197, 325
HphI GGTGA 1 cut(s) 365
Hpy166II GTNNAC 1 cut(s) 308
Hpy188I TCNGA 4 cut(s) 145, 170, 298, 435
Hpy188III TCNNGA 3 cut(s) 325, 336, 416
Hpy8I GTNNAC 1 cut(s) 308
HpyAV CCTTC 1 cut(s) 33
HpyCH4III ACNGT 2 cut(s) 64, 205
HpyCH4V TGCA 2 cut(s) 15, 315
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
Hsp92II CATG 2 cut(s) 19, 119
Kpn2I TCCGGA 1 cut(s) 324
Kzo9I GATC 2 cut(s) 136, 343
LmnI GCTCC 3 cut(s) 193, 286, 385
MaeI CTAG 1 cut(s) 278
MaeIII GTNAC 2 cut(s) 373, 388
MalI GATC 2 cut(s) 138, 345
MbiI CCGCTC 1 cut(s) 188
MboI GATC 2 cut(s) 136, 343
MboII GAAGA 3 cut(s) 32, 311, 413
MflI RGATCY 1 cut(s) 343
MhlI GDGCHC 1 cut(s) 444
MluCI AATT 1 cut(s) 100
MlyI GAGTC 1 cut(s) 381
MnlI CCTC 7 cut(s) 37, 48, 218, 343, 393, 423, 431
MroI TCCGGA 1 cut(s) 324
MroXI GAANNNNTTC 1 cut(s) 405
MseI TTAA 1 cut(s) 99
MspI CCGG 4 cut(s) 126, 155, 197, 325
MspR9I CCNGG 5 cut(s) 54, 126, 127, 197, 351
MvaI CCWGG 2 cut(s) 54, 351
MwoI GCNNNNNNNGC 1 cut(s) 155
NciI CCSGG 3 cut(s) 126, 127, 197
NdeI CATATG 1 cut(s) 106
NdeII GATC 2 cut(s) 136, 343
NlaIII CATG 2 cut(s) 19, 119
NlaIV GGNNCC 1 cut(s) 453
NmuCI GTSAC 2 cut(s) 373, 388
NspI RCATGY 1 cut(s) 19
NspV TTCGAA 1 cut(s) 463
PaeI GCATGC 1 cut(s) 19
PdmI GAANNNNTTC 1 cut(s) 405
PfeI GAWTC 2 cut(s) 6, 430
PfoI TCCNGGA 1 cut(s) 52
PkrI GCNGC 1 cut(s) 21
PleI GAGTC 1 cut(s) 380
PpsI GAGTC 1 cut(s) 380
PpuMI RGGWCCY 1 cut(s) 452
Psp5II RGGWCCY 1 cut(s) 452
Psp6I CCWGG 2 cut(s) 52, 349
PspGI CCWGG 2 cut(s) 52, 349
PspN4I GGNNCC 1 cut(s) 453
PspPI GGNCC 1 cut(s) 452
PspPPI RGGWCCY 1 cut(s) 452
PsuI RGATCY 1 cut(s) 343
RsaI GTAC 1 cut(s) 88
RsaNI GTAC 1 cut(s) 87
SalI GTCGAC 1 cut(s) 306
SaqAI TTAA 1 cut(s) 99
SatI GCNGC 1 cut(s) 20
Sau3AI GATC 2 cut(s) 136, 343
Sau96I GGNCC 1 cut(s) 452
SchI GAGTC 1 cut(s) 381
ScrFI CCNGG 5 cut(s) 54, 126, 127, 197, 351
SduI GDGCHC 1 cut(s) 444
SetI ASST 7 cut(s) 40, 78, 250, 283, 289, 382, 415
SfcI CTRYAG 1 cut(s) 445
SfuI TTCGAA 1 cut(s) 463
SinI GGWCC 1 cut(s) 452
SmaI CCCGGG 1 cut(s) 127
SmlI CTYRAG 2 cut(s) 334, 384
SmoI CTYRAG 2 cut(s) 334, 384
SphI GCATGC 1 cut(s) 19
Sse9I AATT 1 cut(s) 100
SsiI CCGC 2 cut(s) 20, 186
SspMI CTAG 1 cut(s) 278
StyD4I CCNGG 5 cut(s) 52, 124, 125, 195, 349
TaaI ACNGT 2 cut(s) 64, 205
TaqI TCGA 2 cut(s) 307, 463
TasI AATT 1 cut(s) 100
TauI GCSGC 1 cut(s) 22
TfiI GAWTC 2 cut(s) 6, 430
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TscAI CASTG 1 cut(s) 317
TseFI GTSAC 2 cut(s) 373, 388
Tsp45I GTSAC 2 cut(s) 373, 388
TspDTI ATGAA 2 cut(s) 32, 93
TspMI CCCGGG 1 cut(s) 125
TspRI CASTG 1 cut(s) 317
VpaK11BI GGWCC 1 cut(s) 452
XceI RCATGY 1 cut(s) 19
XmaI CCCGGG 1 cut(s) 125
XmiI GTMKAC 1 cut(s) 307
XmnI GAANNNNTTC 1 cut(s) 405
XspI CTAG 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.