AT2G42810

PPP5 TPR repeat region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0007469
Physical Location & Seq
Reverse (-)
17811935 .. 17816772
4838 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G42810.3

Sequence Viewer

Length: 1455 bp
ATGGAGACCAAGAATGAGAATTCTGATGTTTCACGGGCAGAGGAGTTTAAAAGTCAGGCCAACGAAGCTTTTAAAGGTCACAAATACTCCAGTGCTATTGATCTATATACAAAAGCTATTGAACTCAACAGCAACAACGCTGTGTATTGGGCAAATCGTGCATTTGCTCACACAAAACTGGAGGAATATGGCAGTGCAATACAGGATGCATCGAAGGCCATTGAAGTTGATTCAAGATACTCTAAGGGCTATTACAGGCGTGGTGCTGCGTATCTTGCCATGGGAAAATTTAAGGATGCCTTGAAGGACTTCCAACAGGTAAAAAGGCTTTCTCCTAATGACCCTGATGCCACAAGAAAGCTAAAGGAATGTGAGAAAGCAGTGATGAAACTCAAATTTGAAGAAGCAATCTCTGTGCCAGTATCTGAAAGGCGTTCAGTAGCTGAGTCCATTGACTTCCATACAATAGAGGTTGAGCCACAATATTCTGGTGCTAGAATTGAGGGAGAGGAAGTTACCTTAGATTTTGTGAAAACGATGATGGAGGATTTTAAGAACCAAAAAACATTGCATAAACGGTATGCCTATCAAATCGTCTTACAGACTAGGCAAATCTTGCTAGCACTGCCTTCTCTTGTTGATATAAGTGTTCCACATGGCAAACATATCACTGTTTGCGGTGACGTTCATGGTCAGTTCTACGATCTTCTCAATATCTTTGAGCTTAATGGCCTCCCTTCGGAGGAGAACCCATACCTATTTAATGGCGACTTTGTGGACAGAGGCTCATTCTCCGTTGAGATCATCCTCACTTTGTTTGCTTTCAAGTGCATGTGCCCATCATCCATATATCTAGCCAGAGGAAACCATGAAAGCAAGAGCATGAACAAAATTTATGGTTTTGAGGGTGAGGTTCGGTCCAAGTTGAGTGAAAAATTCGTGGATCTCTTTGCTGAAGTTTTCTGTTACCTCCCGTTGGCTCATGTTATAAATGGGAAGGTCTTCGTGGTACATGGAGGTCTTTTCAGTGTTGACGGCGTGAAACTCTCAGACATCAGAGCCATTGACAGATTCTGTGAGCCACCAGAGGAAGGACTAATGTGTGAACTATTGTGGAGTGATCCTCAACCTCTCCCTGGAAGAGGCCCAAGCAAGCGAGGAGTTGGTCTATCATTTGGTGGAGATGTGACAAAGAGGTTTTTGCAAGATAACAATTTAGATTTGTTGGTCCGGTCACATGAAGTAAAAGATGAAGGTTATGAGGTTGAACATGACGGTAAACTCATAACTGTCTTCTCTGCGCCAAATTACTGTGATCAGATGGGTAATAAGGGAGCCTTCATTCGTTTTGAAGCTCCTGATATGAAGCCAAACATTGTTACATTCTCAGCAGTGCCTCATCCGGATGTGAAGCCTATGGCATATGCAAACAACTTTCTCAGGATGTTCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005737 GO:0005783 GO:0005789 GO:0005829 GO:0005911 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006913 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009639 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010017 GO:0010019 GO:0010035 GO:0010038 GO:0010380 GO:0012505 GO:0016020 GO:0016021 GO:0016311 GO:0016604 GO:0016607 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0019538 GO:0023052 GO:0030054 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0031984 GO:0036211 GO:0042175 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046686 GO:0046906 GO:0046907 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051169 GO:0051171 GO:0051172 GO:0051179 GO:0051193 GO:0051195 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0055044 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071704 GO:0090056 GO:0097159 GO:0098827 GO:0104004 GO:0140096 GO:1901363 GO:1901401 GO:1901402 GO:1901463 GO:1901464 GO:1901564 GO:1902325
KEGG Pathways
Metabolic & Signaling
ko04010 map04010
Pfam Domains
Protein Families
Metallophos PPP5 TPR_1 TPR_11 TPR_8

Protein Analysis

484

Amino Acids

54.7

Weight (kDa)

5.88

Isoelectric Point (pI)

37.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_BSK1_C PF25575 9 - 85 1e-06 Serine/threonine-protein kinase BSK1-like, TPR repeats
TPR_1 PF00515 82 - 114 1.5e-08 Tetratricopeptide repeat
TPR_2 PF07719 82 - 114 1.2e-06 Tetratricopeptide repeat
PPP5 PF08321 210 - 267 9.7e-19 PPP5 TPR repeat region
Metallophos PF00149 275 - 469 2.8e-38 Calcineurin-like phosphoesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 989
AccIII TCCGGA 1 cut(s) 1402
AciI CCGC 1 cut(s) 678
AclWI GGATC 2 cut(s) 951, 1115
AcsI RAATTY 5 cut(s) 19, 287, 395, 891, 935
AcuI CTGAAG 1 cut(s) 975
AfaI GTAC 1 cut(s) 1011
AfiI CCNNNNNNNGG 6 cut(s) 739, 742, 976, 1091, 1136, 1142
AgsI TTSAA 9 cut(s) 122, 224, 234, 304, 401, 826, 1268, 1352, 1450
AjnI CCWGG 1 cut(s) 1135
AluBI AGCT 6 cut(s) 68, 116, 361, 443, 724, 1355
AluI AGCT 6 cut(s) 68, 116, 361, 443, 724, 1355
AlwI GGATC 2 cut(s) 951, 1115
AlwNI CAGNNNCTG 3 cut(s) 425, 443, 1074
Aor13HI TCCGGA 1 cut(s) 1402
AoxI GGCC 4 cut(s) 57, 216, 730, 1144
ApeKI GCWGC 1 cut(s) 266
ApoI RAATTY 5 cut(s) 19, 287, 395, 891, 935
Asp700I GAANNNNTTC 2 cut(s) 308, 1001
AspLEI GCGC 1 cut(s) 1303
AspS9I GGNCC 3 cut(s) 918, 1145, 1228
AsuHPI GGTGA 2 cut(s) 692, 920
AsuNHI GCTAGC 1 cut(s) 619
AvaII GGWCC 2 cut(s) 918, 1228
BaeGI GKGCMC 1 cut(s) 839
BbsI GAAGAC 2 cut(s) 994, 1285
BbvI GCAGC 1 cut(s) 253
BccI CCATC 3 cut(s) 535, 847, 1315
BceAI ACGGC 1 cut(s) 1051
BciT130I CCWGG 1 cut(s) 1137
BclI TGATCA 1 cut(s) 1315
BfaI CTAG 4 cut(s) 495, 606, 620, 854
BisI GCNGC 1 cut(s) 267
BlsI GCNGC 1 cut(s) 268
Bme1390I CCNGG 1 cut(s) 1137
Bme18I GGWCC 2 cut(s) 918, 1228
BmgT120I GGNCC 3 cut(s) 918, 1145, 1228
BmiI GGNNCC 1 cut(s) 1336
BmrFI CCNGG 1 cut(s) 1137
BmsI GCATC 4 cut(s) 196, 218, 286, 337
BmtI GCTAGC 1 cut(s) 623
BpiI GAAGAC 2 cut(s) 994, 1285
BplI GAGNNNNNCTC 2 cut(s) 1108, 1140
BpmI CTGGAG 2 cut(s) 73, 200
BsaJI CCNNGG 2 cut(s) 279, 1135
BsaWI WCCGGW 2 cut(s) 1230, 1402
BsaXI ACNNNNNCTCC 4 cut(s) 71, 101, 498, 528
Bsc4I CCNNNNNNNGG 6 cut(s) 739, 742, 976, 1091, 1136, 1142
Bse1I ACTGG 3 cut(s) 90, 183, 419
Bse3DI GCAATG 1 cut(s) 566
BseAI TCCGGA 1 cut(s) 1402
BseBI CCWGG 1 cut(s) 1137
BseDI CCNNGG 2 cut(s) 279, 1135
BseGI GGATG 7 cut(s) 211, 301, 804, 842, 1399, 1411, 1449
BseLI CCNNNNNNNGG 6 cut(s) 739, 742, 976, 1091, 1136, 1142
BseMI GCAATG 1 cut(s) 566
BseMII CTCAG 4 cut(s) 435, 1062, 1401, 1453
BseNI ACTGG 3 cut(s) 90, 183, 419
BseRI GAGGAG 3 cut(s) 56, 758, 1173
BseSI GKGCMC 1 cut(s) 839
BseXI GCAGC 1 cut(s) 253
BshFI GGCC 4 cut(s) 59, 218, 732, 1146
BsiSI CCGG 2 cut(s) 1231, 1403
BslI CCNNNNNNNGG 6 cut(s) 739, 742, 976, 1091, 1136, 1142
BsnI GGCC 4 cut(s) 59, 218, 732, 1146
Bsp1286I GDGCHC 1 cut(s) 839
Bsp13I TCCGGA 1 cut(s) 1402
Bsp143I GATC 6 cut(s) 100, 703, 801, 943, 1120, 1315
Bsp19I CCATGG 1 cut(s) 279
BspACI CCGC 1 cut(s) 678
BspANI GGCC 4 cut(s) 59, 218, 732, 1146
BspCNI CTCAG 4 cut(s) 436, 1061, 1400, 1452
BspEI TCCGGA 1 cut(s) 1402
BspLI GGNNCC 1 cut(s) 1336
BspOI GCTAGC 1 cut(s) 623
BspPI GGATC 2 cut(s) 951, 1115
BsrDI GCAATG 1 cut(s) 566
BsrI ACTGG 3 cut(s) 90, 183, 419
BssECI CCNNGG 2 cut(s) 279, 1135
BssMI GATC 6 cut(s) 100, 703, 801, 943, 1120, 1315
BssT1I CCWWGG 1 cut(s) 279
Bst2UI CCWGG 1 cut(s) 1137
Bst4CI ACNGT 5 cut(s) 579, 673, 1277, 1291, 1313
Bst6I CTCTTC 1 cut(s) 1135
BstAPI GCANNNNNTGC 2 cut(s) 158, 616
BstC8I GCNNGC 2 cut(s) 621, 1154
BstDEI CTNAG 6 cut(s) 243, 444, 520, 1048, 1387, 1439
BstDSI CCRYGG 1 cut(s) 279
BstENI CCTNNNNNAGG 1 cut(s) 1140
BstF5I GGATG 7 cut(s) 211, 301, 804, 842, 1399, 1411, 1449
BstHHI GCGC 1 cut(s) 1303
BstKTI GATC 6 cut(s) 103, 706, 804, 946, 1123, 1318
BstMBI GATC 6 cut(s) 100, 703, 801, 943, 1120, 1315
BstMWI GCNNNNNNNGC 6 cut(s) 65, 158, 215, 275, 616, 625
BstNI CCWGG 1 cut(s) 1137
BstNSI RCATGY 1 cut(s) 835
BstSCI CCNGG 1 cut(s) 1135
BstSLI GKGCMC 1 cut(s) 839
BstV1I GCAGC 1 cut(s) 253
BstV2I GAAGAC 2 cut(s) 994, 1285
BstX2I RGATCY 1 cut(s) 943
BstYI RGATCY 1 cut(s) 943
BsuRI GGCC 4 cut(s) 59, 218, 732, 1146
BtgI CCRYGG 1 cut(s) 279
BtsCI GGATG 7 cut(s) 211, 301, 804, 842, 1399, 1411, 1449
BtsI GCAGTG 4 cut(s) 199, 387, 623, 1398
BtsIMutI CAGTG 7 cut(s) 97, 199, 387, 623, 669, 1033, 1398
Cac8I GCNNGC 2 cut(s) 621, 1154
CaiI CAGNNNCTG 3 cut(s) 425, 443, 1074
CfoI GCGC 1 cut(s) 1303
Cfr13I GGNCC 3 cut(s) 918, 1145, 1228
Csp6I GTAC 1 cut(s) 1010
CviQI GTAC 1 cut(s) 1010
DdeI CTNAG 6 cut(s) 243, 444, 520, 1048, 1387, 1439
DpnI GATC 6 cut(s) 102, 705, 803, 945, 1122, 1317
DpnII GATC 6 cut(s) 100, 703, 801, 943, 1120, 1315
DraI TTTAAA 2 cut(s) 49, 73
Eam1104I CTCTTC 1 cut(s) 1135
EarI CTCTTC 1 cut(s) 1135
Eco130I CCWWGG 1 cut(s) 279
Eco47I GGWCC 2 cut(s) 918, 1228
Eco57I CTGAAG 1 cut(s) 975
EcoNI CCTNNNNNAGG 1 cut(s) 1140
EcoRI GAATTC 1 cut(s) 19
EcoRII CCWGG 1 cut(s) 1135
EcoT14I CCWWGG 1 cut(s) 279
EcoT22I ATGCAT 1 cut(s) 211
ErhI CCWWGG 1 cut(s) 279
FalI AAGNNNNNCTT 4 cut(s) 284, 316, 1322, 1354
FauNDI CATATG 1 cut(s) 1423
FbaI TGATCA 1 cut(s) 1315
Fnu4HI GCNGC 1 cut(s) 267
FokI GGATG 6 cut(s) 218, 308, 791, 829, 1386, 1418
Fsp4HI GCNGC 1 cut(s) 267
FspBI CTAG 4 cut(s) 495, 606, 620, 854
GlaI GCGC 1 cut(s) 1302
GluI GCNGC 1 cut(s) 267
GsuI CTGGAG 2 cut(s) 73, 200
HaeIII GGCC 4 cut(s) 59, 218, 732, 1146
HapII CCGG 2 cut(s) 1231, 1403
HhaI GCGC 1 cut(s) 1303
Hin6I GCGC 1 cut(s) 1301
HinP1I GCGC 1 cut(s) 1301
HincII GTYRAC 1 cut(s) 1033
HindII GTYRAC 1 cut(s) 1033
HindIII AAGCTT 1 cut(s) 66
HinfI GANTC 3 cut(s) 230, 446, 1071
HpaII CCGG 2 cut(s) 1231, 1403
HphI GGTGA 2 cut(s) 692, 920
Hpy166II GTNNAC 4 cut(s) 778, 1033, 1106, 1280
Hpy188I TCNGA 6 cut(s) 25, 427, 742, 1051, 1058, 1320
Hpy188III TCNNGA 4 cut(s) 234, 1358, 1403, 1441
Hpy8I GTNNAC 4 cut(s) 778, 1033, 1106, 1280
HpyAV CCTTC 8 cut(s) 208, 298, 639, 747, 991, 1085, 1247, 1348
HpyCH4III ACNGT 5 cut(s) 579, 673, 1277, 1291, 1313
HpyCH4IV ACGT 1 cut(s) 684
HpyCH4V TGCA 7 cut(s) 161, 197, 209, 571, 831, 1204, 1427
HpyF10VI GCNNNNNNNGC 6 cut(s) 65, 158, 215, 275, 616, 625
HpyF3I CTNAG 6 cut(s) 243, 444, 520, 1048, 1387, 1439
HpySE526I ACGT 1 cut(s) 684
HspAI GCGC 1 cut(s) 1301
Kpn2I TCCGGA 1 cut(s) 1402
Ksp22I TGATCA 1 cut(s) 1315
Kzo9I GATC 6 cut(s) 100, 703, 801, 943, 1120, 1315
LmnI GCTCC 2 cut(s) 1334, 1360
Lsp1109I GCAGC 1 cut(s) 253
LweI GCATC 4 cut(s) 196, 218, 286, 337
MaeI CTAG 4 cut(s) 495, 606, 620, 854
MaeII ACGT 1 cut(s) 684
MaeIII GTNAC 7 cut(s) 77, 514, 680, 965, 1186, 1233, 1378
MalI GATC 6 cut(s) 102, 705, 803, 945, 1122, 1317
MboI GATC 6 cut(s) 100, 703, 801, 943, 1120, 1315
MboII GAAGA 5 cut(s) 413, 698, 994, 1152, 1285
MflI RGATCY 1 cut(s) 943
MhlI GDGCHC 1 cut(s) 839
MluCI AATT 8 cut(s) 19, 287, 395, 498, 891, 935, 1213, 1306
MlyI GAGTC 1 cut(s) 455
MmeI TCCRAC 1 cut(s) 337
Mph1103I ATGCAT 1 cut(s) 211
MroI TCCGGA 1 cut(s) 1402
MroXI GAANNNNTTC 2 cut(s) 308, 1001
MseI TTAA 6 cut(s) 48, 72, 291, 552, 726, 762
MslI CAYNNNNRTG 1 cut(s) 1404
MspI CCGG 2 cut(s) 1231, 1403
MspR9I CCNGG 1 cut(s) 1137
MvaI CCWGG 1 cut(s) 1137
MwoI GCNNNNNNNGC 6 cut(s) 65, 158, 215, 275, 616, 625
NcoI CCATGG 1 cut(s) 279
NdeI CATATG 1 cut(s) 1423
NdeII GATC 6 cut(s) 100, 703, 801, 943, 1120, 1315
NheI GCTAGC 1 cut(s) 619
NlaIV GGNNCC 1 cut(s) 1336
NmuCI GTSAC 4 cut(s) 77, 680, 1186, 1233
NsiI ATGCAT 1 cut(s) 211
NspI RCATGY 1 cut(s) 835
PdmI GAANNNNTTC 2 cut(s) 308, 1001
PfeI GAWTC 2 cut(s) 230, 1071
PkrI GCNGC 1 cut(s) 268
PleI GAGTC 1 cut(s) 454
PpsI GAGTC 1 cut(s) 454
PsiI TTATAA 1 cut(s) 989
Psp6I CCWGG 1 cut(s) 1135
PspGI CCWGG 1 cut(s) 1135
PspN4I GGNNCC 1 cut(s) 1336
PspPI GGNCC 3 cut(s) 918, 1145, 1228
PstNI CAGNNNCTG 3 cut(s) 425, 443, 1074
PsuI RGATCY 1 cut(s) 943
RsaI GTAC 1 cut(s) 1011
RsaNI GTAC 1 cut(s) 1010
RseI CAYNNNNRTG 1 cut(s) 1404
SaqAI TTAA 6 cut(s) 48, 72, 291, 552, 726, 762
SatI GCNGC 1 cut(s) 267
Sau3AI GATC 6 cut(s) 100, 703, 801, 943, 1120, 1315
Sau96I GGNCC 3 cut(s) 918, 1145, 1228
SchI GAGTC 1 cut(s) 455
ScrFI CCNGG 1 cut(s) 1137
SduI GDGCHC 1 cut(s) 839
SfaNI GCATC 4 cut(s) 196, 218, 286, 337
SinI GGWCC 2 cut(s) 918, 1228
SmiMI CAYNNNNRTG 1 cut(s) 1404
Sse9I AATT 8 cut(s) 19, 287, 395, 498, 891, 935, 1213, 1306
SsiI CCGC 1 cut(s) 678
SspI AATATT 1 cut(s) 485
SspMI CTAG 4 cut(s) 495, 606, 620, 854
StyD4I CCNGG 1 cut(s) 1135
StyI CCWWGG 1 cut(s) 279
TaaI ACNGT 5 cut(s) 579, 673, 1277, 1291, 1313
TaiI ACGT 1 cut(s) 687
TaqI TCGA 1 cut(s) 212
TaqII GACCGA 1 cut(s) 906
TasI AATT 8 cut(s) 19, 287, 395, 498, 891, 935, 1213, 1306
TfiI GAWTC 2 cut(s) 230, 1071
Tru1I TTAA 6 cut(s) 48, 72, 291, 552, 726, 762
Tru9I TTAA 6 cut(s) 48, 72, 291, 552, 726, 762
TscAI CASTG 7 cut(s) 97, 199, 387, 630, 676, 1033, 1398
TseFI GTSAC 4 cut(s) 77, 680, 1186, 1233
TseI GCWGC 1 cut(s) 266
Tsp45I GTSAC 4 cut(s) 77, 680, 1186, 1233
TspDTI ATGAA 8 cut(s) 401, 677, 885, 899, 1254, 1266, 1330, 1379
TspGWI ACGGA 1 cut(s) 784
TspRI CASTG 7 cut(s) 97, 199, 387, 630, 676, 1033, 1398
VpaK11BI GGWCC 2 cut(s) 918, 1228
XagI CCTNNNNNAGG 1 cut(s) 1140
XapI RAATTY 5 cut(s) 19, 287, 395, 891, 935
XceI RCATGY 1 cut(s) 835
XmnI GAANNNNTTC 2 cut(s) 308, 1001
XspI CTAG 4 cut(s) 495, 606, 620, 854
Zsp2I ATGCAT 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.