Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0007469

Physical Location & Seq

Genomic Coordinates Reverse (-)

5646206 .. 5647318

Gene Structure 1113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1049700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGCTGACGTTACAAGAAGCGACTGCAGTTGTTGGCCACAATAGTGGTGTGGCAGTCATGGCGGCTGTGGGGGAATGTTGGTGGCGCGGTGGCAGTTGCAACGAAAGTCGAGTAAATAACCACCACCTATATGCCGGTGAAGCTGGGGATATTGTTGTTACTCTGGATTTTGTGAGGGAGATGATGGAGGATTTCAAGAACCAGAAGACATTGCACCCGCGAGAAGCTTTCCAAATCATCTCACAGGCGAAAGAACTGTTGCGAGCCCTGCCCTCCCTGGTTGATATAAGTGTTCCTGCTGGCAATCACATTACTGTCTGTGGCGATGTGCATGGTCAGTTCTATGATCTGGTAAATATTTTCGAGCTCAACGGGCTTCCATCGGAGGAGAATCCGTATCTGTTCAACGGAGATTTTGTCGACAGGGGATCTTTTTCTTTGGAGGTAGTCCTAACGTTGTTTGCATTGAAGTGCATGTGTCCATCAGCGATACATCTCGCAAGAGGAAACCATGAGACAAAGAACATGAACATGATATACGGTTTTGAGGGCGAGGTCCGGTCGAAGTTAGGTGAAAATTTTGTGGAGTTGTTTGCTGAAGCGTTTTGCTGTTTACCGCTGGCTCATGTAATCAACGACAAGGTTTTTGTAACGCATGGCGGTCTTTTCAGTGTCGATGGAGTGAAATTGAGCGACATTAGAGAGATAAATAGGTTTTGTGAACCTCCGCAGGAAGGGTTGATGTGTGAATTGCTGTGGAGTGATCCACAAGCTACACCCGGAAGAGGCCCAAGCAAGCGAGGTTCAGGTGTTTCTTTTGGTGGCGACGTGACAAGACGATTTTTGCAGGATAACGATTTAAGTTTAGTTGTGCGATCTCACGAACTGAAGGGCGAGGGATATGAGTTTGAGCATGATGAAAGACTCGTCACAGTTTTTTCTGCTCCGAATTACTGTGATCAGTTCGGTAACAAGGGTGCGTTTATTCGTTTCGAAGGACCAGATTGCGCTCAGATTTTTACTTTCTCAGCAGTGCCACATCCCGACGTCAAGCCAATGGCATACGCAAATAACTTCCTTCTATCCGCTATCCGACGACAACTTACCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0016604 GO:0016607 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04010 map04010

Pfam Domains

Protein Families

Metallophos PPP5 TPR_1 TPR_11 TPR_16 TPR_8

Protein Analysis

371

Amino Acids

41.01

Weight (kDa)

5.24

Isoelectric Point (pI)

32.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPP5	PF08321	50 - 95	1.2e-11	PPP5 TPR repeat region
Metallophos	PF00149	103 - 296	8.3e-37	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42810 AT2G42810 AT2G42810 AT2G42810 AT2G42810
fragaria_vesca	FvH4_6g37780 FvH4_6g37780
malus_domestica	MD09G1156000.v1.1 MD12G1049700.v1.1 MD17G1142100.v1.1
prunus_persica	Prupe.3G168900_v2.0.a1 Prupe.3G168900_v2.0.a1
pyrus_communis	pycom09g07480 pycom17g13530
rosa_chinensis	RchiOBHm_Chr2g0150851
rosa_laevigata	RLG00000020512
rosa_multiflora	Rmu_co8451479.1_g000001 Rmu_sc0038225.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096910
rosa_rugosa	Rorug02G0422800 Rorug02G0422900
rosa_samantha	Rh2AG483200 Rh2CG469500 Rh2DG506500
rosa_wichuraiana	Rw2G039600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1050
AccI	GTMKAC	1 cut(s)	420
AccII	CGCG	2 cut(s)	87, 220
AciI	CCGC	7 cut(s)	62, 87, 218, 617, 660, 728, 1086
AclI	AACGTT	1 cut(s)	455
AclWI	GGATC	2 cut(s)	436, 758
AcoI	YGGCCR	1 cut(s)	34
AcsI	RAATTY	1 cut(s)	577
AcuI	CTGAAG	2 cut(s)	618, 908
AcyI	GRCGYC	1 cut(s)	1047
AfiI	CCNNNNNNNGG	2 cut(s)	734, 785
AgeI	ACCGGT	1 cut(s)	1106
AgsI	TTSAA	3 cut(s)	196, 406, 469
AjiI	CACGTC	1 cut(s)	829
AjnI	CCWGG	1 cut(s)	276
AleI	CACNNNNGTG	1 cut(s)	42
AluBI	AGCT	4 cut(s)	143, 227, 367, 773
AluI	AGCT	4 cut(s)	143, 227, 367, 773
Alw21I	GWGCWC	1 cut(s)	369
Alw26I	GTCTC	1 cut(s)	509
AlwI	GGATC	2 cut(s)	436, 758
AoxI	GGCC	2 cut(s)	34, 787
ApoI	RAATTY	1 cut(s)	577
ArsI	GACNNNNNNTTYG	2 cut(s)	629, 661
AsiGI	ACCGGT	1 cut(s)	1106
AspLEI	GCGC	2 cut(s)	87, 1010
AspS9I	GGNCC	3 cut(s)	556, 788, 998
AsuC2I	CCSGG	1 cut(s)	780
AsuHPI	GGTGA	2 cut(s)	149, 584
AsuII	TTCGAA	1 cut(s)	993
AvaII	GGWCC	2 cut(s)	556, 998
BalI	TGGCCA	1 cut(s)	36
BanII	GRGCYC	2 cut(s)	268, 369
BbsI	GAAGAC	1 cut(s)	212
Bbv12I	GWGCWC	1 cut(s)	369
BccI	CCATC	4 cut(s)	178, 388, 490, 671
BciT130I	CCWGG	1 cut(s)	278
BclI	TGATCA	1 cut(s)	958
BcnI	CCSGG	1 cut(s)	780
BcoDI	GTCTC	1 cut(s)	509
BfmI	CTRYAG	1 cut(s)	24
BisI	GCNGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	64
Bme1390I	CCNGG	2 cut(s)	278, 780
Bme18I	GGWCC	2 cut(s)	556, 998
BmgBI	CACGTC	1 cut(s)	829
BmgT120I	GGNCC	3 cut(s)	556, 788, 998
BmrFI	CCNGG	2 cut(s)	278, 780
BpiI	GAAGAC	1 cut(s)	212
Bpu14I	TTCGAA	1 cut(s)	993
BpuMI	CCSGG	1 cut(s)	780
BsaHI	GRCGYC	1 cut(s)	1047
BsaJI	CCNNGG	1 cut(s)	276
BsaWI	WCCGGW	2 cut(s)	558, 1106
BsaXI	ACNNNNNCTCC	4 cut(s)	380, 402, 410, 432
Bsc4I	CCNNNNNNNGG	2 cut(s)	734, 785
Bse118I	RCCGGY	2 cut(s)	134, 1106
Bse3DI	GCAATG	1 cut(s)	209
BseBI	CCWGG	1 cut(s)	278
BseDI	CCNNGG	1 cut(s)	276
BseGI	GGATG	1 cut(s)	1039
BseLI	CCNNNNNNNGG	2 cut(s)	734, 785
BseMI	GCAATG	1 cut(s)	209
BseMII	CTCAG	2 cut(s)	1025, 1041
BseRI	GAGGAG	1 cut(s)	401
BseYI	CCCAGC	1 cut(s)	143
Bsh1236I	CGCG	2 cut(s)	87, 220
Bsh1285I	CGRYCG	1 cut(s)	563
BshFI	GGCC	2 cut(s)	36, 789
BshTI	ACCGGT	1 cut(s)	1106
BsiEI	CGRYCG	1 cut(s)	563
BsiHKAI	GWGCWC	1 cut(s)	369
BsiSI	CCGG	4 cut(s)	135, 559, 780, 1107
BslI	CCNNNNNNNGG	2 cut(s)	734, 785
BsmAI	GTCTC	1 cut(s)	509
BsnI	GGCC	2 cut(s)	36, 789
Bsp119I	TTCGAA	1 cut(s)	993
Bsp1286I	GDGCHC	2 cut(s)	268, 369
Bsp143I	GATC	5 cut(s)	346, 428, 763, 875, 958
BspACI	CCGC	7 cut(s)	62, 87, 218, 617, 660, 728, 1086
BspANI	GGCC	2 cut(s)	36, 789
BspCNI	CTCAG	2 cut(s)	1024, 1040
BspFNI	CGCG	2 cut(s)	87, 220
BspMAI	CTGCAG	1 cut(s)	28
BspPI	GGATC	2 cut(s)	436, 758
BspT104I	TTCGAA	1 cut(s)	993
BsrDI	GCAATG	1 cut(s)	209
BsrFI	RCCGGY	2 cut(s)	134, 1106
BssAI	RCCGGY	2 cut(s)	134, 1106
BssECI	CCNNGG	1 cut(s)	276
BssMI	GATC	5 cut(s)	346, 428, 763, 875, 958
BssNI	GRCGYC	1 cut(s)	1047
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	5 cut(s)	258, 316, 542, 934, 956
Bst6I	CTCTTC	1 cut(s)	778
BstACI	GRCGYC	1 cut(s)	1047
BstBI	TTCGAA	1 cut(s)	993
BstC8I	GCNNGC	4 cut(s)	264, 301, 621, 797
BstDEI	CTNAG	2 cut(s)	1011, 1027
BstF5I	GGATG	1 cut(s)	1039
BstFNI	CGCG	2 cut(s)	87, 220
BstHHI	GCGC	2 cut(s)	87, 1010
BstKTI	GATC	5 cut(s)	349, 431, 766, 878, 961
BstMAI	GTCTC	1 cut(s)	509
BstMBI	GATC	5 cut(s)	346, 428, 763, 875, 958
BstMCI	CGRYCG	1 cut(s)	563
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 140, 268, 373
BstNI	CCWGG	1 cut(s)	278
BstNSI	RCATGY	1 cut(s)	478
BstSCI	CCNGG	2 cut(s)	276, 778
BstSFI	CTRYAG	1 cut(s)	24
BstUI	CGCG	2 cut(s)	87, 220
BstV2I	GAAGAC	1 cut(s)	212
BstX2I	RGATCY	1 cut(s)	428
BstXI	CCANNNNNNTGG	1 cut(s)	44
BstYI	RGATCY	1 cut(s)	428
BsuRI	GGCC	2 cut(s)	36, 789
BtgZI	GCGATG	1 cut(s)	339
BtrI	CACGTC	1 cut(s)	829
BtsCI	GGATG	1 cut(s)	1039
BtsI	GCAGTG	1 cut(s)	1038
BtsIMutI	CAGTG	2 cut(s)	676, 1038
Cac8I	GCNNGC	4 cut(s)	264, 301, 621, 797
CfoI	GCGC	2 cut(s)	87, 1010
Cfr10I	RCCGGY	2 cut(s)	134, 1106
Cfr13I	GGNCC	3 cut(s)	556, 788, 998
CspAI	ACCGGT	1 cut(s)	1106
CviAII	CATG	9 cut(s)	58, 332, 475, 512, 526, 532, 626, 656, 914
DdeI	CTNAG	2 cut(s)	1011, 1027
DpnI	GATC	5 cut(s)	348, 430, 765, 877, 960
DpnII	GATC	5 cut(s)	346, 428, 763, 875, 958
EaeI	YGGCCR	1 cut(s)	34
Eam1104I	CTCTTC	1 cut(s)	778
EarI	CTCTTC	1 cut(s)	778
Ecl136II	GAGCTC	1 cut(s)	367
Eco24I	GRGCYC	2 cut(s)	268, 369
Eco47I	GGWCC	2 cut(s)	556, 998
Eco53kI	GAGCTC	1 cut(s)	367
Eco57I	CTGAAG	2 cut(s)	618, 908
EcoICRI	GAGCTC	1 cut(s)	367
EcoRII	CCWGG	1 cut(s)	276
EcoT38I	GRGCYC	2 cut(s)	268, 369
FaeI	CATG	9 cut(s)	61, 335, 478, 515, 529, 535, 629, 659, 917
FatI	CATG	9 cut(s)	57, 331, 474, 511, 525, 531, 625, 655, 913
FauI	CCCGC	1 cut(s)	225
FbaI	TGATCA	1 cut(s)	958
FblI	GTMKAC	1 cut(s)	420
Fnu4HI	GCNGC	1 cut(s)	63
FokI	GGATG	1 cut(s)	1026
FriOI	GRGCYC	2 cut(s)	268, 369
Fsp4HI	GCNGC	1 cut(s)	63
GlaI	GCGC	2 cut(s)	86, 1009
GluI	GCNGC	1 cut(s)	63
GsaI	CCCAGC	1 cut(s)	147
HaeIII	GGCC	2 cut(s)	36, 789
HapII	CCGG	4 cut(s)	135, 559, 780, 1107
HhaI	GCGC	2 cut(s)	87, 1010
Hin1I	GRCGYC	1 cut(s)	1047
Hin1II	CATG	9 cut(s)	61, 335, 478, 515, 529, 535, 629, 659, 917
Hin6I	GCGC	2 cut(s)	85, 1008
HinP1I	GCGC	2 cut(s)	85, 1008
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HindIII	AAGCTT	1 cut(s)	225
HinfI	GANTC	2 cut(s)	391, 924
HpaII	CCGG	4 cut(s)	135, 559, 780, 1107
HphI	GGTGA	2 cut(s)	149, 584
Hpy166II	GTNNAC	3 cut(s)	421, 614, 722
Hpy188I	TCNGA	4 cut(s)	385, 948, 1014, 1094
Hpy188III	TCNNGA	4 cut(s)	164, 196, 881, 1043
Hpy8I	GTNNAC	3 cut(s)	421, 614, 722
Hpy99I	CGWCG	3 cut(s)	830, 1049, 1098
HpyAV	CCTTC	4 cut(s)	728, 883, 989, 1088
HpyCH4III	ACNGT	5 cut(s)	258, 316, 542, 934, 956
HpyCH4IV	ACGT	4 cut(s)	8, 455, 828, 1047
HpyCH4V	TGCA	7 cut(s)	26, 99, 214, 331, 464, 474, 847
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 140, 268, 373
HpyF3I	CTNAG	2 cut(s)	1011, 1027
HpySE526I	ACGT	4 cut(s)	8, 455, 828, 1047
Hsp92I	GRCGYC	1 cut(s)	1047
Hsp92II	CATG	9 cut(s)	61, 335, 478, 515, 529, 535, 629, 659, 917
HspAI	GCGC	2 cut(s)	85, 1008
Ksp22I	TGATCA	1 cut(s)	958
Kzo9I	GATC	5 cut(s)	346, 428, 763, 875, 958
LmnI	GCTCC	1 cut(s)	949
MaeII	ACGT	4 cut(s)	8, 455, 828, 1047
MaeIII	GTNAC	6 cut(s)	9, 157, 649, 829, 928, 968
MalI	GATC	5 cut(s)	348, 430, 765, 877, 960
MboI	GATC	5 cut(s)	346, 428, 763, 875, 958
MboII	GAAGA	2 cut(s)	217, 795
MflI	RGATCY	1 cut(s)	428
MhlI	GDGCHC	2 cut(s)	268, 369
MlsI	TGGCCA	1 cut(s)	36
MluCI	AATT	4 cut(s)	577, 686, 749, 949
MluNI	TGGCCA	1 cut(s)	36
MlyI	GAGTC	1 cut(s)	918
Mox20I	TGGCCA	1 cut(s)	36
MscI	TGGCCA	1 cut(s)	36
MseI	TTAA	1 cut(s)	860
MslI	CAYNNNNRTG	4 cut(s)	42, 129, 469, 530
Msp20I	TGGCCA	1 cut(s)	36
MspA1I	CMGCKG	1 cut(s)	619
MspI	CCGG	4 cut(s)	135, 559, 780, 1107
MspR9I	CCNGG	2 cut(s)	278, 780
MvaI	CCWGG	1 cut(s)	278
MvnI	CGCG	2 cut(s)	87, 220
MwoI	GCNNNNNNNGC	4 cut(s)	59, 140, 268, 373
NciI	CCSGG	1 cut(s)	780
NdeII	GATC	5 cut(s)	346, 428, 763, 875, 958
NlaIII	CATG	9 cut(s)	61, 335, 478, 515, 529, 535, 629, 659, 917
NmuCI	GTSAC	2 cut(s)	829, 928
NspI	RCATGY	1 cut(s)	478
NspV	TTCGAA	1 cut(s)	993
OliI	CACNNNNGTG	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	391
PinAI	ACCGGT	1 cut(s)	1106
PkrI	GCNGC	1 cut(s)	64
PleI	GAGTC	1 cut(s)	918
PpsI	GAGTC	1 cut(s)	918
Psp124BI	GAGCTC	1 cut(s)	369
Psp1406I	AACGTT	1 cut(s)	455
Psp6I	CCWGG	1 cut(s)	276
PspFI	CCCAGC	1 cut(s)	143
PspGI	CCWGG	1 cut(s)	276
PspPI	GGNCC	3 cut(s)	556, 788, 998
PsrI	GAACNNNNNNTAC	2 cut(s)	521, 553
PstI	CTGCAG	1 cut(s)	28
PsuI	RGATCY	1 cut(s)	428
RseI	CAYNNNNRTG	4 cut(s)	42, 129, 469, 530
SacI	GAGCTC	1 cut(s)	369
SalI	GTCGAC	1 cut(s)	419
SaqAI	TTAA	1 cut(s)	860
SatI	GCNGC	1 cut(s)	63
Sau3AI	GATC	5 cut(s)	346, 428, 763, 875, 958
Sau96I	GGNCC	3 cut(s)	556, 788, 998
SchI	GAGTC	1 cut(s)	918
ScrFI	CCNGG	2 cut(s)	278, 780
SduI	GDGCHC	2 cut(s)	268, 369
SfcI	CTRYAG	1 cut(s)	24
SfuI	TTCGAA	1 cut(s)	993
SinI	GGWCC	2 cut(s)	556, 998
SmiMI	CAYNNNNRTG	4 cut(s)	42, 129, 469, 530
Sse9I	AATT	4 cut(s)	577, 686, 749, 949
SsiI	CCGC	7 cut(s)	62, 87, 218, 617, 660, 728, 1086
SspI	AATATT	1 cut(s)	358
SstI	GAGCTC	1 cut(s)	369
StyD4I	CCNGG	2 cut(s)	276, 778
TaaI	ACNGT	5 cut(s)	258, 316, 542, 934, 956
TaiI	ACGT	4 cut(s)	11, 458, 831, 1050
TaqI	TCGA	6 cut(s)	109, 363, 420, 563, 675, 993
TasI	AATT	4 cut(s)	577, 686, 749, 949
TauI	GCSGC	1 cut(s)	65
TfiI	GAWTC	1 cut(s)	391
Tru1I	TTAA	1 cut(s)	860
Tru9I	TTAA	1 cut(s)	860
TscAI	CASTG	2 cut(s)	676, 1038
TseFI	GTSAC	2 cut(s)	829, 928
Tsp45I	GTSAC	2 cut(s)	829, 928
TspDTI	ATGAA	2 cut(s)	542, 933
TspGWI	ACGGA	2 cut(s)	384, 423
TspRI	CASTG	2 cut(s)	676, 1038
VpaK11BI	GGWCC	2 cut(s)	556, 998
XapI	RAATTY	1 cut(s)	577
XceI	RCATGY	1 cut(s)	478
XmiI	GTMKAC	1 cut(s)	420
ZraI	GACGTC	1 cut(s)	1048

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.