Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8451479.1

Orthogroup ID

OG0007469

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1641

Gene Structure 1641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8451479.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ttctatgatctcctaaacatttttgagcttaatgggcttccttcagaggagaatccgtatctattcaatggtgattttgtggacagaggatcattttcgctggaggtcattctaacactgtttgcatttaagtgcatgtctccatcagcaatatatcttgcaagggggaaccatgaaagcaaaagcatgaacaggatatatggttttgagggcgaggtccagtccaagttaagcgaaaaatttgtggaactatttgctgaagtgttttgttgtttaccgttggctcatgtaataaacggcaaggtgtttgtagttcatgggggtctttttagtgttgatggggtgaaactgagtgatattaaagcaattaatcggttttgtgaacctcctgaggaaggattgatgtgtgaattgctatggagtgatccacaacctgcacctggaagaggccctagcaagcgaggtgtaggtctttcttttggtggtgatgtgacaaaaagatttttgcaggacaacaatttagatttagttgtgcgctctcatgaagtaaaggatgagggatatgagattgagcatgatggtaaactcatcactgtattttctgccccaaattactgtgatcagatgggtaacaaaggcgcctttatccgttttgaagcaccagatttgaagccaaatatagtcactttttcagcagtgccgcatcctgatgtgaagccaatggcatatgcaaataacttcctccgactctttcagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0016604 GO:0016607 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04010 map04010

Pfam Domains

Protein Families

Metallophos PPP5 TPR_1 TPR_11 TPR_16 TPR_8

Protein Analysis

252

Amino Acids

28.18

Weight (kDa)

5.2

Isoelectric Point (pI)

39.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42810 AT2G42810 AT2G42810 AT2G42810 AT2G42810
fragaria_vesca	FvH4_6g37780 FvH4_6g37780
malus_domestica	MD09G1156000.v1.1 MD12G1049700.v1.1 MD17G1142100.v1.1
prunus_persica	Prupe.3G168900_v2.0.a1 Prupe.3G168900_v2.0.a1
pyrus_communis	pycom09g07480 pycom17g13530
rosa_chinensis	RchiOBHm_Chr2g0150851
rosa_laevigata	RLG00000020512
rosa_multiflora	Rmu_co8451479.1_g000001 Rmu_sc0038225.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096910
rosa_rugosa	Rorug02G0422800 Rorug02G0422900
rosa_samantha	Rh2AG483200 Rh2CG469500 Rh2DG506500
rosa_wichuraiana	Rw2G039600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	442
AccB1I	GGYRCC	1 cut(s)	638
AciI	CCGC	1 cut(s)	701
AclWI	GGATC	2 cut(s)	97, 419
AcsI	RAATTY	1 cut(s)	239
AcuI	CTGAAG	2 cut(s)	27, 279
AcyI	GRCGYC	1 cut(s)	639
AfiI	CCNNNNNNNGG	3 cut(s)	395, 440, 446
AgsI	TTSAA	3 cut(s)	67, 656, 670
AjnI	CCWGG	1 cut(s)	439
AluBI	AGCT	1 cut(s)	28
AluI	AGCT	1 cut(s)	28
Alw26I	GTCTC	1 cut(s)	144
AlwI	GGATC	2 cut(s)	97, 419
AoxI	GGCC	1 cut(s)	448
ApoI	RAATTY	1 cut(s)	239
AseI	ATTAAT	1 cut(s)	369
AspLEI	GCGC	2 cut(s)	537, 641
AspS9I	GGNCC	2 cut(s)	217, 449
AsuHPI	GGTGA	3 cut(s)	83, 355, 497
AvaII	GGWCC	1 cut(s)	217
AxyI	CCTNAGG	1 cut(s)	390
BanI	GGYRCC	1 cut(s)	638
BccI	CCATC	4 cut(s)	151, 332, 572, 619
BceAI	ACGGC	1 cut(s)	313
BciT130I	CCWGG	1 cut(s)	441
BclI	TGATCA	1 cut(s)	619
BcoDI	GTCTC	1 cut(s)	144
BfaI	CTAG	1 cut(s)	453
BfoI	RGCGCY	1 cut(s)	642
BfuAI	ACCTGC	1 cut(s)	442
BisI	GCNGC	1 cut(s)	701
BlsI	GCNGC	1 cut(s)	702
Bme1390I	CCNGG	1 cut(s)	441
Bme18I	GGWCC	1 cut(s)	217
BmgT120I	GGNCC	2 cut(s)	217, 449
BmiI	GGNNCC	2 cut(s)	170, 640
BmrFI	CCNGG	1 cut(s)	441
BmsI	GCATC	1 cut(s)	712
BpmI	CTGGAG	1 cut(s)	122
BsaHI	GRCGYC	1 cut(s)	639
BsaXI	ACNNNNNCTCC	2 cut(s)	41, 71
Bsc4I	CCNNNNNNNGG	3 cut(s)	395, 440, 446
Bse1I	ACTGG	1 cut(s)	220
Bse21I	CCTNAGG	1 cut(s)	390
BseBI	CCWGG	1 cut(s)	441
BseGI	GGATG	2 cut(s)	559, 703
BseLI	CCNNNNNNNGG	3 cut(s)	395, 440, 446
BseMII	CTCAG	2 cut(s)	341, 381
BseNI	ACTGG	1 cut(s)	220
BseRI	GAGGAG	1 cut(s)	62
BsgI	GTGCAG	1 cut(s)	420
BshFI	GGCC	1 cut(s)	450
BshNI	GGYRCC	1 cut(s)	638
BslI	CCNNNNNNNGG	3 cut(s)	395, 440, 446
BsmAI	GTCTC	1 cut(s)	144
BsnI	GGCC	1 cut(s)	450
Bsp143I	GATC	4 cut(s)	7, 89, 424, 619
BspACI	CCGC	1 cut(s)	701
BspANI	GGCC	1 cut(s)	450
BspCNI	CTCAG	2 cut(s)	342, 382
BspHI	TCATGA	1 cut(s)	541
BspLI	GGNNCC	2 cut(s)	170, 640
BspMI	ACCTGC	1 cut(s)	442
BspPI	GGATC	2 cut(s)	97, 419
BspT107I	GGYRCC	1 cut(s)	638
BsrI	ACTGG	1 cut(s)	220
BssMI	GATC	4 cut(s)	7, 89, 424, 619
BssNI	GRCGYC	1 cut(s)	639
Bst2UI	CCWGG	1 cut(s)	441
Bst4CI	ACNGT	4 cut(s)	120, 279, 595, 617
Bst6I	CTCTTC	1 cut(s)	439
BstACI	GRCGYC	1 cut(s)	639
BstC8I	GCNNGC	1 cut(s)	458
BstDEI	CTNAG	2 cut(s)	350, 390
BstENI	CCTNNNNNAGG	2 cut(s)	393, 444
BstF5I	GGATG	2 cut(s)	559, 703
BstH2I	RGCGCY	1 cut(s)	642
BstHHI	GCGC	2 cut(s)	537, 641
BstKTI	GATC	4 cut(s)	10, 92, 427, 622
BstMAI	GTCTC	1 cut(s)	144
BstMBI	GATC	4 cut(s)	7, 89, 424, 619
BstMWI	GCNNNNNNNGC	1 cut(s)	34
BstNI	CCWGG	1 cut(s)	441
BstNSI	RCATGY	1 cut(s)	139
BstSCI	CCNGG	1 cut(s)	439
Bsu36I	CCTNAGG	1 cut(s)	390
BsuRI	GGCC	1 cut(s)	450
BtsCI	GGATG	2 cut(s)	559, 703
BtsI	GCAGTG	1 cut(s)	702
BtsIMutI	CAGTG	3 cut(s)	116, 591, 702
BveI	ACCTGC	1 cut(s)	442
Cac8I	GCNNGC	1 cut(s)	458
CciI	TCATGA	1 cut(s)	541
CfoI	GCGC	2 cut(s)	537, 641
Cfr13I	GGNCC	2 cut(s)	217, 449
CviAII	CATG	7 cut(s)	136, 173, 187, 287, 317, 542, 575
CviJI	RGCY	6 cut(s)	28, 37, 284, 450, 673, 718
CviKI_1	RGCY	6 cut(s)	28, 37, 284, 450, 673, 718
DdeI	CTNAG	2 cut(s)	350, 390
DinI	GGCGCC	1 cut(s)	640
DpnI	GATC	4 cut(s)	9, 91, 426, 621
DpnII	GATC	4 cut(s)	7, 89, 424, 619
Eam1104I	CTCTTC	1 cut(s)	439
EarI	CTCTTC	1 cut(s)	439
Eco47I	GGWCC	1 cut(s)	217
Eco57I	CTGAAG	2 cut(s)	27, 279
Eco81I	CCTNAGG	1 cut(s)	390
EcoNI	CCTNNNNNAGG	2 cut(s)	393, 444
EcoO109I	RGGNCCY	1 cut(s)	449
EcoRII	CCWGG	1 cut(s)	439
EgeI	GGCGCC	1 cut(s)	640
EheI	GGCGCC	1 cut(s)	640
FaeI	CATG	7 cut(s)	139, 176, 190, 290, 320, 545, 578
FatI	CATG	7 cut(s)	135, 172, 186, 286, 316, 541, 574
FauNDI	CATATG	1 cut(s)	727
FbaI	TGATCA	1 cut(s)	619
Fnu4HI	GCNGC	1 cut(s)	701
FokI	GGATG	2 cut(s)	566, 690
Fsp4HI	GCNGC	1 cut(s)	701
FspBI	CTAG	1 cut(s)	453
GlaI	GCGC	2 cut(s)	536, 640
GluI	GCNGC	1 cut(s)	701
GsuI	CTGGAG	1 cut(s)	122
HaeII	RGCGCY	1 cut(s)	642
HaeIII	GGCC	1 cut(s)	450
HhaI	GCGC	2 cut(s)	537, 641
Hin1I	GRCGYC	1 cut(s)	639
Hin1II	CATG	7 cut(s)	139, 176, 190, 290, 320, 545, 578
Hin6I	GCGC	2 cut(s)	535, 639
HinP1I	GCGC	2 cut(s)	535, 639
HinfI	GANTC	2 cut(s)	52, 747
HphI	GGTGA	3 cut(s)	83, 355, 497
Hpy166II	GTNNAC	4 cut(s)	82, 275, 383, 584
Hpy188I	TCNGA	3 cut(s)	46, 624, 746
Hpy188III	TCNNGA	3 cut(s)	389, 542, 707
Hpy8I	GTNNAC	4 cut(s)	82, 275, 383, 584
HpyAV	CCTTC	2 cut(s)	51, 389
HpyCH4III	ACNGT	4 cut(s)	120, 279, 595, 617
HpyCH4V	TGCA	6 cut(s)	125, 135, 161, 437, 508, 731
HpyF10VI	GCNNNNNNNGC	1 cut(s)	34
HpyF3I	CTNAG	2 cut(s)	350, 390
Hsp92I	GRCGYC	1 cut(s)	639
Hsp92II	CATG	7 cut(s)	139, 176, 190, 290, 320, 545, 578
HspAI	GCGC	2 cut(s)	535, 639
KasI	GGCGCC	1 cut(s)	638
Ksp22I	TGATCA	1 cut(s)	619
Kzo9I	GATC	4 cut(s)	7, 89, 424, 619
LweI	GCATC	1 cut(s)	712
MaeI	CTAG	1 cut(s)	453
MaeIII	GTNAC	3 cut(s)	490, 629, 682
MalI	GATC	4 cut(s)	9, 91, 426, 621
MboI	GATC	4 cut(s)	7, 89, 424, 619
MboII	GAAGA	1 cut(s)	456
MluCI	AATT	5 cut(s)	239, 366, 410, 517, 610
Mly113I	GGCGCC	1 cut(s)	639
MlyI	GAGTC	1 cut(s)	741
MseI	TTAA	5 cut(s)	30, 129, 230, 360, 369
MslI	CAYNNNNRTG	2 cut(s)	130, 708
MspR9I	CCNGG	1 cut(s)	441
MvaI	CCWGG	1 cut(s)	441
MwoI	GCNNNNNNNGC	1 cut(s)	34
NarI	GGCGCC	1 cut(s)	639
NdeI	CATATG	1 cut(s)	727
NdeII	GATC	4 cut(s)	7, 89, 424, 619
NlaIII	CATG	7 cut(s)	139, 176, 190, 290, 320, 545, 578
NlaIV	GGNNCC	2 cut(s)	170, 640
NmuCI	GTSAC	2 cut(s)	490, 682
NspI	RCATGY	1 cut(s)	139
PagI	TCATGA	1 cut(s)	541
PfeI	GAWTC	1 cut(s)	52
PkrI	GCNGC	1 cut(s)	702
PleI	GAGTC	1 cut(s)	741
PluTI	GGCGCC	1 cut(s)	642
PpsI	GAGTC	1 cut(s)	741
PshBI	ATTAAT	1 cut(s)	369
Psp6I	CCWGG	1 cut(s)	439
PspGI	CCWGG	1 cut(s)	439
PspN4I	GGNNCC	2 cut(s)	170, 640
PspPI	GGNCC	2 cut(s)	217, 449
RseI	CAYNNNNRTG	2 cut(s)	130, 708
SaqAI	TTAA	5 cut(s)	30, 129, 230, 360, 369
SatI	GCNGC	1 cut(s)	701
Sau3AI	GATC	4 cut(s)	7, 89, 424, 619
Sau96I	GGNCC	2 cut(s)	217, 449
SchI	GAGTC	1 cut(s)	741
ScrFI	CCNGG	1 cut(s)	441
SetI	ASST	9 cut(s)	30, 108, 219, 306, 388, 436, 442, 466, 472
SfaNI	GCATC	1 cut(s)	712
SfoI	GGCGCC	1 cut(s)	640
SinI	GGWCC	1 cut(s)	217
SmiMI	CAYNNNNRTG	2 cut(s)	130, 708
Sse9I	AATT	5 cut(s)	239, 366, 410, 517, 610
SsiI	CCGC	1 cut(s)	701
SspDI	GGCGCC	1 cut(s)	638
SspMI	CTAG	1 cut(s)	453
StyD4I	CCNGG	1 cut(s)	439
TaaI	ACNGT	4 cut(s)	120, 279, 595, 617
TasI	AATT	5 cut(s)	239, 366, 410, 517, 610
TauI	GCSGC	1 cut(s)	703
TfiI	GAWTC	1 cut(s)	52
Tru1I	TTAA	5 cut(s)	30, 129, 230, 360, 369
Tru9I	TTAA	5 cut(s)	30, 129, 230, 360, 369
TscAI	CASTG	3 cut(s)	123, 598, 702
TseFI	GTSAC	2 cut(s)	490, 682
Tsp45I	GTSAC	2 cut(s)	490, 682
TspDTI	ATGAA	4 cut(s)	189, 203, 305, 558
TspGWI	ACGGA	2 cut(s)	45, 638
TspRI	CASTG	3 cut(s)	123, 598, 702
VpaK11BI	GGWCC	1 cut(s)	217
VspI	ATTAAT	1 cut(s)	369
XagI	CCTNNNNNAGG	2 cut(s)	393, 444
XapI	RAATTY	1 cut(s)	239
XceI	RCATGY	1 cut(s)	139
XspI	CTAG	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.