Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0007469

Physical Location & Seq

Genomic Coordinates Forward (+)

11160116 .. 11167487

Gene Structure 7372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g13530.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1449 bp

ATGGAAACTGATAATGCTAATGTTAAGCAAGCTGAAGATGCTAAACTCCTTGCCAATGAAGCATATAAAGCTCATAAGTTTGCTCAAGCTATTGATCTGTATACACAAGCGATTGAATTAAACAGTCAGAATGCTGTATACTGGGCCAATCGTTCAATTGCCCACCTTAAACTGGAGGAATATGGTAGCGCCATACAAGATGCTTCCAAGGCTATTGAAATCGATCCCAAATATTCAAAGGGATACTATAGGCGAGGTGCAGCTTATCTTGCTATGGGGAAATTTAAAGAAGCGTTAAAGGATTTTCAGCAGGTCAAAAGAATCTGTCCAAATGATCCTGATGCTACCAAGAAATTGAAGGAATGTGAGAAAGCAGTGATGAAACTTAAATTTGCTGAAGCAATATCTGTACCGGAGGCTGAAAGGCGTCCTGTAGCTGATTCTATTAATTATCATTCTATAGATGTGGAGCCACAATATGGTGGTGCAAGGATAGAAGGGGACGTTGTTACTTTGGATTTTGTGAAGAAAATGATGGAGGATTTCAAGAGTCAGAAGAATTTACACCAACGATATGCGTTCCAAATTGTTTTACAGACGAAAGAAATGTTGCAAGCCATGCCTTCTCTGGTTGATATAAACATTCCTGAGGGCAAACATTTTACTGTTTGTGGTGACGTACATGGTCAGTTCTATGATCTTCTAAATATTTTTGAGCTTAACGGGCTTCCTTCAGATGAGAATCCATATCTATTCAATGGAGACTTTGTGGACAGGGGATCTTTTTCTTTGGAGGTGATCCTAACGTTGTTTGCATTTAAGTGCATGTCTCCATCAGCTATATATCTCGCAAGAGGAAACCATGAGAGCAAGAGCATGAATAGGATATATGGTTTTGAGGGCGAAGTCCAGTCCAAATTAAGTGAAAAGTTTGTGGAGCTGTTTGCTGAAGTGTTTTGTTGTCTACCGCTGGCTCATGTGATCAATGGGAAGGTTTTTGTAGTCCATGGGGGTCTTTTCAGTGTTGATGGAGTGAAACTCAGTGACATTAGAGCAATTAATCGGTTTTGTGAACCTCCTGAGGAAGGGTTAATGTGTGAATTGCTGTGGAGTGATCCACAACCTGCACCTGGAAGGGGGCCAAGCAAACGAGGCGTAGGTCTTTCTTTTGGTGGTGATGTGACAAAAAGATTTTTGCAGGAAAACAATTTAGTTAGTTGTGCGATCGATCATGAAGTAAAGGACGAGGGTTATGAGATTGAGCATGATGGCAAACTCATCACTGTTTTTTCTGCTCCAAATTACTGTGATCAGATGGGTAACAAGGGTGCCTTTATCCGTTTCGAATCACCAGAATTGAAGCCTAACATTGTTAATTTCTCAGCAGTGGCACATCCTGACGTCAAGCCAATGGCATATGCAAACAACTTCCTCCGAATGTTTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0016604 GO:0016607 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04010 map04010

Pfam Domains

Protein Families

Metallophos PPP5 TPR_1 TPR_11 TPR_16 TPR_8

Protein Analysis

483

Amino Acids

54.17

Weight (kDa)

5.66

Isoelectric Point (pI)

37.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42810 AT2G42810 AT2G42810 AT2G42810 AT2G42810
fragaria_vesca	FvH4_6g37780 FvH4_6g37780
malus_domestica	MD09G1156000.v1.1 MD12G1049700.v1.1 MD17G1142100.v1.1
prunus_persica	Prupe.3G168900_v2.0.a1 Prupe.3G168900_v2.0.a1
pyrus_communis	pycom09g07480 pycom17g13530
rosa_chinensis	RchiOBHm_Chr2g0150851
rosa_laevigata	RLG00000020512
rosa_multiflora	Rmu_co8451479.1_g000001 Rmu_sc0038225.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096910
rosa_rugosa	Rorug02G0422800 Rorug02G0422900
rosa_samantha	Rh2AG483200 Rh2CG469500 Rh2DG506500
rosa_wichuraiana	Rw2G039600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1404
Acc36I	ACCTGC	2 cut(s)	301, 1132
AccB1I	GGYRCC	1 cut(s)	1328
AccB7I	CCANNNNNTGG	1 cut(s)	479
AccI	GTMKAC	3 cut(s)	101, 138, 964
AciI	CCGC	1 cut(s)	968
AclI	AACGTT	1 cut(s)	806
AclWI	GGATC	5 cut(s)	218, 329, 787, 793, 1109
AcsI	RAATTY	3 cut(s)	281, 389, 559
AcuI	CTGAAG	4 cut(s)	54, 417, 717, 969
AcyI	GRCGYC	2 cut(s)	427, 1401
AfaI	GTAC	2 cut(s)	411, 681
AfiI	CCNNNNNNNGG	5 cut(s)	172, 479, 1085, 1130, 1136
AgsI	TTSAA	8 cut(s)	116, 156, 218, 237, 358, 547, 757, 1360
AjnI	CCWGG	1 cut(s)	1129
AluBI	AGCT	8 cut(s)	32, 71, 89, 263, 437, 718, 839, 940
AluI	AGCT	8 cut(s)	32, 71, 89, 263, 437, 718, 839, 940
Alw26I	GTCTC	2 cut(s)	756, 834
AlwI	GGATC	5 cut(s)	218, 329, 787, 793, 1109
AoxI	GGCC	2 cut(s)	144, 1139
ApeKI	GCWGC	1 cut(s)	260
ApoI	RAATTY	3 cut(s)	281, 389, 559
AseI	ATTAAT	2 cut(s)	447, 1059
AspLEI	GCGC	1 cut(s)	191
AspS9I	GGNCC	2 cut(s)	144, 1139
AsuHPI	GGTGA	4 cut(s)	686, 808, 1187, 1341
AsuII	TTCGAA	1 cut(s)	1344
AxyI	CCTNAGG	2 cut(s)	648, 1080
BanI	GGYRCC	1 cut(s)	1328
BbvI	GCAGC	1 cut(s)	272
BccI	CCATC	5 cut(s)	529, 841, 1022, 1262, 1309
BciT130I	CCWGG	1 cut(s)	1131
BciVI	GTATCC	1 cut(s)	236
BclI	TGATCA	2 cut(s)	981, 1309
BcoDI	GTCTC	2 cut(s)	756, 834
BfmI	CTRYAG	3 cut(s)	247, 432, 459
BfoI	RGCGCY	1 cut(s)	192
BfuAI	ACCTGC	2 cut(s)	301, 1132
BfuI	GTATCC	1 cut(s)	236
BisI	GCNGC	1 cut(s)	261
BlsI	GCNGC	1 cut(s)	262
Bme1390I	CCNGG	1 cut(s)	1131
BmgT120I	GGNCC	2 cut(s)	144, 1139
BmiI	GGNNCC	3 cut(s)	471, 1140, 1330
BmrFI	CCNGG	1 cut(s)	1131
BmrI	ACTGGG	1 cut(s)	151
BmsI	GCATC	3 cut(s)	28, 190, 331
BmuI	ACTGGG	1 cut(s)	151
BplI	GAGNNNNNCTC	2 cut(s)	1023, 1055
BpmI	CTGGAG	1 cut(s)	194
Bpu14I	TTCGAA	1 cut(s)	1344
BpuEI	CTTGAG	1 cut(s)	69
Bsa29I	ATCGAT	2 cut(s)	222, 1227
BsaBI	GATNNNNATC	1 cut(s)	741
BsaHI	GRCGYC	2 cut(s)	427, 1401
BsaJI	CCNNGG	2 cut(s)	207, 1006
BsaWI	WCCGGW	1 cut(s)	412
BsaXI	ACNNNNNCTCC	2 cut(s)	753, 783
Bsc4I	CCNNNNNNNGG	5 cut(s)	172, 479, 1085, 1130, 1136
Bse1I	ACTGG	3 cut(s)	146, 177, 910
Bse21I	CCTNAGG	2 cut(s)	648, 1080
Bse8I	GATNNNNATC	1 cut(s)	741
BseBI	CCWGG	1 cut(s)	1131
BseCI	ATCGAT	2 cut(s)	222, 1227
BseDI	CCNNGG	2 cut(s)	207, 1006
BseGI	GGATG	1 cut(s)	1393
BseJI	GATNNNNATC	1 cut(s)	741
BseLI	CCNNNNNNNGG	5 cut(s)	172, 479, 1085, 1130, 1136
BseMII	CTCAG	4 cut(s)	639, 1054, 1071, 1395
BseNI	ACTGG	3 cut(s)	146, 177, 910
BseXI	GCAGC	1 cut(s)	272
BsgI	GTGCAG	2 cut(s)	279, 1110
Bsh1285I	CGRYCG	1 cut(s)	1227
BshFI	GGCC	2 cut(s)	146, 1141
BshNI	GGYRCC	1 cut(s)	1328
BshVI	ATCGAT	2 cut(s)	222, 1227
BsiEI	CGRYCG	1 cut(s)	1227
BsiSI	CCGG	1 cut(s)	413
BslFI	GGGAC	1 cut(s)	515
BslI	CCNNNNNNNGG	5 cut(s)	172, 479, 1085, 1130, 1136
BsmAI	GTCTC	2 cut(s)	756, 834
BsmFI	GGGAC	1 cut(s)	515
BsmI	GAATGC	1 cut(s)	136
BsnI	GGCC	2 cut(s)	146, 1141
Bsp119I	TTCGAA	1 cut(s)	1344
Bsp19I	CCATGG	1 cut(s)	1006
BspACI	CCGC	1 cut(s)	968
BspANI	GGCC	2 cut(s)	146, 1141
BspCNI	CTCAG	4 cut(s)	640, 1053, 1072, 1394
BspDI	ATCGAT	2 cut(s)	222, 1227
BspHI	TCATGA	1 cut(s)	1231
BspLI	GGNNCC	3 cut(s)	471, 1140, 1330
BspMI	ACCTGC	2 cut(s)	301, 1132
BspPI	GGATC	5 cut(s)	218, 329, 787, 793, 1109
BspT104I	TTCGAA	1 cut(s)	1344
BspT107I	GGYRCC	1 cut(s)	1328
BsrI	ACTGG	3 cut(s)	146, 177, 910
BssECI	CCNNGG	2 cut(s)	207, 1006
BssNAI	GTATAC	2 cut(s)	102, 139
BssNI	GRCGYC	2 cut(s)	427, 1401
BssT1I	CCWWGG	2 cut(s)	207, 1006
Bst1107I	GTATAC	2 cut(s)	102, 139
Bst2UI	CCWGG	1 cut(s)	1131
Bst4CI	ACNGT	4 cut(s)	125, 667, 1285, 1307
BstACI	GRCGYC	2 cut(s)	427, 1401
BstAPI	GCANNNNNTGC	1 cut(s)	619
BstBI	TTCGAA	1 cut(s)	1344
BstC8I	GCNNGC	3 cut(s)	30, 615, 972
BstDEI	CTNAG	4 cut(s)	648, 1040, 1080, 1381
BstDSI	CCRYGG	1 cut(s)	1006
BstENI	CCTNNNNNAGG	1 cut(s)	1083
BstF5I	GGATG	1 cut(s)	1393
BstH2I	RGCGCY	1 cut(s)	192
BstHHI	GCGC	1 cut(s)	191
BstMAI	GTCTC	2 cut(s)	756, 834
BstMCI	CGRYCG	1 cut(s)	1227
BstMWI	GCNNNNNNNGC	8 cut(s)	38, 59, 68, 209, 269, 619, 724, 1152
BstNI	CCWGG	1 cut(s)	1131
BstNSI	RCATGY	1 cut(s)	829
BstSCI	CCNGG	1 cut(s)	1129
BstSFI	CTRYAG	3 cut(s)	247, 432, 459
BstV1I	GCAGC	1 cut(s)	272
BstX2I	RGATCY	1 cut(s)	779
BstYI	RGATCY	1 cut(s)	779
BstZ17I	GTATAC	2 cut(s)	102, 139
Bsu15I	ATCGAT	2 cut(s)	222, 1227
Bsu36I	CCTNAGG	2 cut(s)	648, 1080
BsuI	GTATCC	1 cut(s)	236
BsuRI	GGCC	2 cut(s)	146, 1141
BsuTUI	ATCGAT	2 cut(s)	222, 1227
BtgI	CCRYGG	1 cut(s)	1006
BtsCI	GGATG	1 cut(s)	1393
BtsI	GCAGTG	2 cut(s)	381, 1392
BtsIMutI	CAGTG	5 cut(s)	381, 1027, 1048, 1281, 1392
BveI	ACCTGC	2 cut(s)	301, 1132
Cac8I	GCNNGC	3 cut(s)	30, 615, 972
CciI	TCATGA	1 cut(s)	1231
CfoI	GCGC	1 cut(s)	191
Cfr13I	GGNCC	2 cut(s)	144, 1139
ClaI	ATCGAT	2 cut(s)	222, 1227
CseI	GACGC	1 cut(s)	416
Csp6I	GTAC	2 cut(s)	410, 680
CviAII	CATG	9 cut(s)	619, 683, 826, 863, 877, 977, 1007, 1232, 1265
CviQI	GTAC	2 cut(s)	410, 680
DdeI	CTNAG	4 cut(s)	648, 1040, 1080, 1381
DraI	TTTAAA	1 cut(s)	286
Eco130I	CCWWGG	2 cut(s)	207, 1006
Eco57I	CTGAAG	4 cut(s)	54, 417, 717, 969
Eco81I	CCTNAGG	2 cut(s)	648, 1080
EcoNI	CCTNNNNNAGG	1 cut(s)	1083
EcoRII	CCWGG	1 cut(s)	1129
EcoT14I	CCWWGG	2 cut(s)	207, 1006
ErhI	CCWWGG	2 cut(s)	207, 1006
FaeI	CATG	9 cut(s)	622, 686, 829, 866, 880, 980, 1010, 1235, 1268
FalI	AAGNNNNNCTT	2 cut(s)	1316, 1348
FaqI	GGGAC	1 cut(s)	515
FatI	CATG	9 cut(s)	618, 682, 825, 862, 876, 976, 1006, 1231, 1264
FauNDI	CATATG	1 cut(s)	1417
FbaI	TGATCA	2 cut(s)	981, 1309
FblI	GTMKAC	3 cut(s)	101, 138, 964
Fnu4HI	GCNGC	1 cut(s)	261
FokI	GGATG	1 cut(s)	1380
Fsp4HI	GCNGC	1 cut(s)	261
GlaI	GCGC	1 cut(s)	190
GluI	GCNGC	1 cut(s)	261
GsuI	CTGGAG	1 cut(s)	194
HaeII	RGCGCY	1 cut(s)	192
HaeIII	GGCC	2 cut(s)	146, 1141
HapII	CCGG	1 cut(s)	413
HgaI	GACGC	1 cut(s)	416
HhaI	GCGC	1 cut(s)	191
Hin1I	GRCGYC	2 cut(s)	427, 1401
Hin1II	CATG	9 cut(s)	622, 686, 829, 866, 880, 980, 1010, 1235, 1268
Hin6I	GCGC	1 cut(s)	189
HinP1I	GCGC	1 cut(s)	189
HinfI	GANTC	5 cut(s)	321, 440, 550, 742, 1346
HpaII	CCGG	1 cut(s)	413
HphI	GGTGA	4 cut(s)	686, 808, 1187, 1341
Hpy166II	GTNNAC	5 cut(s)	102, 139, 772, 965, 1073
Hpy188I	TCNGA	5 cut(s)	129, 555, 736, 1314, 1436
Hpy188III	TCNNGA	6 cut(s)	338, 547, 647, 1079, 1232, 1397
Hpy8I	GTNNAC	5 cut(s)	102, 139, 772, 965, 1073
HpyAV	CCTTC	7 cut(s)	352, 491, 633, 741, 985, 1079, 1128
HpyCH4III	ACNGT	4 cut(s)	125, 667, 1285, 1307
HpyCH4IV	ACGT	4 cut(s)	504, 678, 806, 1401
HpyCH4V	TGCA	8 cut(s)	260, 488, 613, 815, 825, 1127, 1198, 1421
HpyF10VI	GCNNNNNNNGC	8 cut(s)	38, 59, 68, 209, 269, 619, 724, 1152
HpyF3I	CTNAG	4 cut(s)	648, 1040, 1080, 1381
HpySE526I	ACGT	4 cut(s)	504, 678, 806, 1401
Hsp92I	GRCGYC	2 cut(s)	427, 1401
Hsp92II	CATG	9 cut(s)	622, 686, 829, 866, 880, 980, 1010, 1235, 1268
HspAI	GCGC	1 cut(s)	189
Ksp22I	TGATCA	2 cut(s)	981, 1309
LmnI	GCTCC	3 cut(s)	469, 937, 1300
Lsp1109I	GCAGC	1 cut(s)	272
LweI	GCATC	3 cut(s)	28, 190, 331
MaeII	ACGT	4 cut(s)	504, 678, 806, 1401
MaeIII	GTNAC	5 cut(s)	508, 674, 1043, 1180, 1319
MboII	GAAGA	4 cut(s)	47, 538, 568, 692
MfeI	CAATTG	1 cut(s)	156
MflI	RGATCY	1 cut(s)	779
MlyI	GAGTC	1 cut(s)	559
MslI	CAYNNNNRTG	1 cut(s)	820
MspA1I	CMGCKG	1 cut(s)	970
MspI	CCGG	1 cut(s)	413
MspR9I	CCNGG	1 cut(s)	1131
MunI	CAATTG	1 cut(s)	156
Mva1269I	GAATGC	1 cut(s)	136
MvaI	CCWGG	1 cut(s)	1131
MwoI	GCNNNNNNNGC	8 cut(s)	38, 59, 68, 209, 269, 619, 724, 1152
NcoI	CCATGG	1 cut(s)	1006
NdeI	CATATG	1 cut(s)	1417
NlaIII	CATG	9 cut(s)	622, 686, 829, 866, 880, 980, 1010, 1235, 1268
NlaIV	GGNNCC	3 cut(s)	471, 1140, 1330
NmuCI	GTSAC	3 cut(s)	674, 1043, 1180
NspI	RCATGY	1 cut(s)	829
NspV	TTCGAA	1 cut(s)	1344
PagI	TCATGA	1 cut(s)	1231
PctI	GAATGC	1 cut(s)	136
PfeI	GAWTC	4 cut(s)	321, 440, 742, 1346
PflMI	CCANNNNNTGG	1 cut(s)	479
PkrI	GCNGC	1 cut(s)	262
Ple19I	CGATCG	1 cut(s)	1227
PleI	GAGTC	1 cut(s)	558
PpsI	GAGTC	1 cut(s)	558
PshBI	ATTAAT	2 cut(s)	447, 1059
Psp1406I	AACGTT	1 cut(s)	806
Psp6I	CCWGG	1 cut(s)	1129
PspGI	CCWGG	1 cut(s)	1129
PspN4I	GGNNCC	3 cut(s)	471, 1140, 1330
PspPI	GGNCC	2 cut(s)	144, 1139
PsuI	RGATCY	1 cut(s)	779
PvuI	CGATCG	1 cut(s)	1227
RsaI	GTAC	2 cut(s)	411, 681
RsaNI	GTAC	2 cut(s)	410, 680
RseI	CAYNNNNRTG	1 cut(s)	820
SatI	GCNGC	1 cut(s)	261
Sau96I	GGNCC	2 cut(s)	144, 1139
SchI	GAGTC	1 cut(s)	559
ScrFI	CCNGG	1 cut(s)	1131
SfaNI	GCATC	3 cut(s)	28, 190, 331
SfcI	CTRYAG	3 cut(s)	247, 432, 459
SfuI	TTCGAA	1 cut(s)	1344
SmiMI	CAYNNNNRTG	1 cut(s)	820
SmlI	CTYRAG	1 cut(s)	84
SmoI	CTYRAG	1 cut(s)	84
SsiI	CCGC	1 cut(s)	968
SspI	AATATT	2 cut(s)	233, 709
StyD4I	CCNGG	1 cut(s)	1129
StyI	CCWWGG	2 cut(s)	207, 1006
TaaI	ACNGT	4 cut(s)	125, 667, 1285, 1307
TaiI	ACGT	4 cut(s)	507, 681, 809, 1404
TaqI	TCGA	3 cut(s)	222, 1227, 1344
TfiI	GAWTC	4 cut(s)	321, 440, 742, 1346
TscAI	CASTG	5 cut(s)	381, 1027, 1048, 1288, 1392
TseFI	GTSAC	3 cut(s)	674, 1043, 1180
TseI	GCWGC	1 cut(s)	260
Tsp45I	GTSAC	3 cut(s)	674, 1043, 1180
TspDTI	ATGAA	4 cut(s)	72, 395, 893, 1248
TspGWI	ACGGA	1 cut(s)	1328
TspRI	CASTG	5 cut(s)	381, 1027, 1048, 1288, 1392
Van91I	CCANNNNNTGG	1 cut(s)	479
VspI	ATTAAT	2 cut(s)	447, 1059
XagI	CCTNNNNNAGG	1 cut(s)	1083
XapI	RAATTY	3 cut(s)	281, 389, 559
XceI	RCATGY	1 cut(s)	829
XcmI	CCANNNNNNNNNTGG	1 cut(s)	625
XmiI	GTMKAC	3 cut(s)	101, 138, 964
ZraI	GACGTC	1 cut(s)	1402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.