Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007469

Physical Location & Seq

Genomic Coordinates Reverse (-)

54410926 .. 54412564

Gene Structure 1639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0422900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGACGACGTACGGCACGATCCCGACCTCGTCGTCGCCGGGCGGGTCGTCCTCCGTCTCCGGCGAGTACGTCTCCCGCGCCAAGGACCGCATCAAGGCCGGCCTCGGCTCCCGCCGCCCCTGGAAGGTCATGTTCGACTTCCGCTCCCTAAACTTCGCCCACGGCTTCGGCGACGCGCTCACGCGCCTCCGCTACAACGCCGCCTACTTCCGCATGAACTACGCCATCATCGTCCTCCTGATCCTCTTCCTCAGCCTGCTCTGGCACCCGATCTCGCTGATCGTCCTCATCATCATGCTCGCCGCGTGGCTCTTCCTCTACTTCCTCCGCGACGAGCCGCTCGCCCTGTTCGGCCGGACCGTCGACGACCGCATCGTGCTGATCGTGTTGGGCGTGGTGACGATTGTGCTTCTGTTTCTGACCTCGGCGACGACGAACATCCTGGTGGCGCTGCTGGTTGCGGTGGTGGTGGTGGCGGTGCACGCGACGCTGAGGAAGACGGAGGATTTGCACGTGGATGAGGAGAATGCCGGATTGATGACCGGATCTTCATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0016604 GO:0016607 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04010 map04010

Pfam Domains

Protein Families

Metallophos PPP5 TPR_1 TPR_11 TPR_16 TPR_8

Protein Analysis

185

Amino Acids

20.41

Weight (kDa)

9.39

Isoelectric Point (pI)

33.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA1	PF03208	35 - 175	3.8e-50	PRA1 family protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42810 AT2G42810 AT2G42810 AT2G42810 AT2G42810
fragaria_vesca	FvH4_6g37780 FvH4_6g37780
malus_domestica	MD09G1156000.v1.1 MD12G1049700.v1.1 MD17G1142100.v1.1
prunus_persica	Prupe.3G168900_v2.0.a1 Prupe.3G168900_v2.0.a1
pyrus_communis	pycom09g07480 pycom17g13530
rosa_chinensis	RchiOBHm_Chr2g0150851
rosa_laevigata	RLG00000020512
rosa_multiflora	Rmu_co8451479.1_g000001 Rmu_sc0038225.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096910
rosa_rugosa	Rorug02G0422800 Rorug02G0422900
rosa_samantha	Rh2AG483200 Rh2CG469500 Rh2DG506500
rosa_wichuraiana	Rw2G039600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	31
AccB1I	GGYRCC	1 cut(s)	264
AccBSI	CCGCTC	2 cut(s)	144, 340
AccI	GTMKAC	1 cut(s)	363
AccII	CGCG	6 cut(s)	78, 176, 184, 305, 330, 485
AclWI	GGATC	3 cut(s)	13, 235, 553
AcoI	YGGCCR	1 cut(s)	352
AcvI	CACGTG	1 cut(s)	514
AfaI	GTAC	2 cut(s)	11, 68
AfiI	CCNNNNNNNGG	3 cut(s)	82, 94, 124
AjnI	CCWGG	2 cut(s)	119, 441
Alw21I	GWGCWC	1 cut(s)	483
Alw26I	GTCTC	2 cut(s)	61, 76
Alw44I	GTGCAC	1 cut(s)	479
AlwI	GGATC	3 cut(s)	13, 235, 553
AoxI	GGCC	3 cut(s)	96, 100, 352
ApaLI	GTGCAC	1 cut(s)	479
ApeKI	GCWGC	1 cut(s)	451
ArsI	GACNNNNNNTTYG	2 cut(s)	490, 522
AspLEI	GCGC	4 cut(s)	80, 178, 186, 451
AspS9I	GGNCC	2 cut(s)	85, 357
AsuC2I	CCSGG	1 cut(s)	39
AsuHPI	GGTGA	1 cut(s)	409
AvaII	GGWCC	2 cut(s)	85, 357
BaeGI	GKGCMC	1 cut(s)	483
BanI	GGYRCC	1 cut(s)	264
BbrPI	CACGTG	1 cut(s)	514
BbsI	GAAGAC	1 cut(s)	503
Bbv12I	GWGCWC	1 cut(s)	483
BbvCI	CCTCAGC	2 cut(s)	251, 491
BbvI	GCAGC	1 cut(s)	438
BccI	CCATC	1 cut(s)	233
BceAI	ACGGC	2 cut(s)	28, 178
BciT130I	CCWGG	2 cut(s)	121, 443
BcnI	CCSGG	1 cut(s)	39
BcoDI	GTCTC	2 cut(s)	61, 76
BfoI	RGCGCY	1 cut(s)	452
BisI	GCNGC	5 cut(s)	115, 201, 303, 338, 452
BlsI	GCNGC	5 cut(s)	116, 202, 304, 339, 453
Bme1390I	CCNGG	3 cut(s)	39, 121, 443
Bme18I	GGWCC	2 cut(s)	85, 357
BmgT120I	GGNCC	2 cut(s)	85, 357
BmiI	GGNNCC	2 cut(s)	109, 266
BmrFI	CCNGG	3 cut(s)	39, 121, 443
BmsI	GCATC	2 cut(s)	99, 381
BpiI	GAAGAC	1 cut(s)	503
BplI	GAGNNNNNCTC	2 cut(s)	56, 88
Bpu10I	CCTNAGC	2 cut(s)	251, 491
BpuMI	CCSGG	1 cut(s)	39
BsaAI	YACGTR	1 cut(s)	514
BsaBI	GATNNNNATC	1 cut(s)	550
BsaJI	CCNNGG	5 cut(s)	81, 103, 119, 160, 423
BsaWI	WCCGGW	1 cut(s)	542
BsaXI	ACNNNNNCTCC	2 cut(s)	128, 158
Bsc4I	CCNNNNNNNGG	3 cut(s)	82, 94, 124
Bse118I	RCCGGY	1 cut(s)	98
Bse8I	GATNNNNATC	1 cut(s)	550
BseBI	CCWGG	2 cut(s)	121, 443
BseDI	CCNNGG	5 cut(s)	81, 103, 119, 160, 423
BseGI	GGATG	2 cut(s)	438, 523
BseJI	GATNNNNATC	1 cut(s)	550
BseLI	CCNNNNNNNGG	3 cut(s)	82, 94, 124
BseMII	CTCAG	2 cut(s)	265, 482
BseRI	GAGGAG	1 cut(s)	536
BseSI	GKGCMC	1 cut(s)	483
BseX3I	CGGCCG	1 cut(s)	352
BseXI	GCAGC	1 cut(s)	438
Bsh1236I	CGCG	6 cut(s)	78, 176, 184, 305, 330, 485
Bsh1285I	CGRYCG	2 cut(s)	355, 370
BshFI	GGCC	3 cut(s)	98, 102, 354
BshNI	GGYRCC	1 cut(s)	264
BsiEI	CGRYCG	2 cut(s)	355, 370
BsiHKAI	GWGCWC	1 cut(s)	483
BsiSI	CCGG	6 cut(s)	38, 60, 99, 355, 531, 543
BsiWI	CGTACG	1 cut(s)	9
BslI	CCNNNNNNNGG	3 cut(s)	82, 94, 124
BsmAI	GTCTC	2 cut(s)	61, 76
BsmBI	CGTCTC	2 cut(s)	61, 76
BsmI	GAATGC	1 cut(s)	532
BsnI	GGCC	3 cut(s)	98, 102, 354
Bsp1286I	GDGCHC	1 cut(s)	483
Bsp143I	GATC	6 cut(s)	18, 240, 270, 279, 381, 545
BspANI	GGCC	3 cut(s)	98, 102, 354
BspCNI	CTCAG	2 cut(s)	264, 483
BspFNI	CGCG	6 cut(s)	78, 176, 184, 305, 330, 485
BspLI	GGNNCC	2 cut(s)	109, 266
BspPI	GGATC	3 cut(s)	13, 235, 553
BspQI	GCTCTTC	1 cut(s)	317
BspT107I	GGYRCC	1 cut(s)	264
BsrBI	CCGCTC	2 cut(s)	144, 340
BsrFI	RCCGGY	1 cut(s)	98
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	5 cut(s)	81, 103, 119, 160, 423
BssMI	GATC	6 cut(s)	18, 240, 270, 279, 381, 545
BssT1I	CCWWGG	1 cut(s)	81
Bst2UI	CCWGG	2 cut(s)	121, 443
Bst4CI	ACNGT	1 cut(s)	361
Bst6I	CTCTTC	2 cut(s)	251, 317
BstBAI	YACGTR	1 cut(s)	514
BstC8I	GCNNGC	5 cut(s)	100, 257, 300, 342, 483
BstDEI	CTNAG	3 cut(s)	251, 491, 555
BstDSI	CCRYGG	1 cut(s)	160
BstF5I	GGATG	2 cut(s)	438, 523
BstFNI	CGCG	6 cut(s)	78, 176, 184, 305, 330, 485
BstH2I	RGCGCY	1 cut(s)	452
BstHHI	GCGC	4 cut(s)	80, 178, 186, 451
BstKTI	GATC	6 cut(s)	21, 243, 273, 282, 384, 548
BstMAI	GTCTC	2 cut(s)	61, 76
BstMBI	GATC	6 cut(s)	18, 240, 270, 279, 381, 545
BstMCI	CGRYCG	2 cut(s)	355, 370
BstMWI	GCNNNNNNNGC	3 cut(s)	114, 482, 487
BstNI	CCWGG	2 cut(s)	121, 443
BstSCI	CCNGG	3 cut(s)	37, 119, 441
BstSLI	GKGCMC	1 cut(s)	483
BstUI	CGCG	6 cut(s)	78, 176, 184, 305, 330, 485
BstV1I	GCAGC	1 cut(s)	438
BstV2I	GAAGAC	1 cut(s)	503
BstX2I	RGATCY	1 cut(s)	545
BstYI	RGATCY	1 cut(s)	545
BstZI	CGGCCG	1 cut(s)	352
BsuRI	GGCC	3 cut(s)	98, 102, 354
BtgI	CCRYGG	1 cut(s)	160
BtsCI	GGATG	2 cut(s)	438, 523
Cac8I	GCNNGC	5 cut(s)	100, 257, 300, 342, 483
CfoI	GCGC	4 cut(s)	80, 178, 186, 451
Cfr10I	RCCGGY	1 cut(s)	98
Cfr13I	GGNCC	2 cut(s)	85, 357
CpoI	CGGWCCG	1 cut(s)	357
CseI	GACGC	2 cut(s)	182, 496
Csp6I	GTAC	2 cut(s)	10, 67
CspI	CGGWCCG	1 cut(s)	357
CviAII	CATG	3 cut(s)	130, 214, 295
CviJI	RGCY	8 cut(s)	98, 102, 108, 165, 255, 310, 337, 354
CviKI_1	RGCY	8 cut(s)	98, 102, 108, 165, 255, 310, 337, 354
CviQI	GTAC	2 cut(s)	10, 67
DdeI	CTNAG	3 cut(s)	251, 491, 555
DpnI	GATC	6 cut(s)	20, 242, 272, 281, 383, 547
DpnII	GATC	6 cut(s)	18, 240, 270, 279, 381, 545
DrdI	GACNNNNNNGTC	1 cut(s)	31
DseDI	GACNNNNNNGTC	1 cut(s)	31
EaeI	YGGCCR	1 cut(s)	352
EagI	CGGCCG	1 cut(s)	352
Eam1104I	CTCTTC	2 cut(s)	251, 317
EarI	CTCTTC	2 cut(s)	251, 317
EclXI	CGGCCG	1 cut(s)	352
Eco130I	CCWWGG	1 cut(s)	81
Eco47I	GGWCC	2 cut(s)	85, 357
Eco52I	CGGCCG	1 cut(s)	352
Eco72I	CACGTG	1 cut(s)	514
EcoRII	CCWGG	2 cut(s)	119, 441
EcoT14I	CCWWGG	1 cut(s)	81
ErhI	CCWWGG	1 cut(s)	81
Esp3I	CGTCTC	2 cut(s)	61, 76
FaeI	CATG	3 cut(s)	133, 217, 298
FaiI	YATR	3 cut(s)	131, 215, 296
FatI	CATG	3 cut(s)	129, 213, 294
FauI	CCCGC	3 cut(s)	35, 83, 119
FblI	GTMKAC	1 cut(s)	363
Fnu4HI	GCNGC	5 cut(s)	115, 201, 303, 338, 452
FokI	GGATG	2 cut(s)	425, 530
FseI	GGCCGGCC	1 cut(s)	102
Fsp4HI	GCNGC	5 cut(s)	115, 201, 303, 338, 452
GlaI	GCGC	4 cut(s)	79, 177, 185, 450
GluI	GCNGC	5 cut(s)	115, 201, 303, 338, 452
HaeII	RGCGCY	1 cut(s)	452
HaeIII	GGCC	3 cut(s)	98, 102, 354
HapII	CCGG	6 cut(s)	38, 60, 99, 355, 531, 543
HgaI	GACGC	2 cut(s)	182, 496
HhaI	GCGC	4 cut(s)	80, 178, 186, 451
Hin1II	CATG	3 cut(s)	133, 217, 298
Hin6I	GCGC	4 cut(s)	78, 176, 184, 449
HinP1I	GCGC	4 cut(s)	78, 176, 184, 449
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HpaII	CCGG	6 cut(s)	38, 60, 99, 355, 531, 543
HphI	GGTGA	1 cut(s)	409
Hpy166II	GTNNAC	2 cut(s)	364, 481
Hpy188I	TCNGA	1 cut(s)	420
Hpy188III	TCNNGA	2 cut(s)	22, 238
Hpy8I	GTNNAC	2 cut(s)	364, 481
HpyAV	CCTTC	1 cut(s)	118
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4IV	ACGT	3 cut(s)	8, 69, 513
HpyCH4V	TGCA	2 cut(s)	481, 511
HpyF10VI	GCNNNNNNNGC	3 cut(s)	114, 482, 487
HpyF3I	CTNAG	3 cut(s)	251, 491, 555
HpySE526I	ACGT	3 cut(s)	8, 69, 513
Hsp92II	CATG	3 cut(s)	133, 217, 298
HspAI	GCGC	4 cut(s)	78, 176, 184, 449
KroI	GCCGGC	1 cut(s)	98
KroNI	GCCGGC	1 cut(s)	100
Kzo9I	GATC	6 cut(s)	18, 240, 270, 279, 381, 545
LguI	GCTCTTC	1 cut(s)	317
LmnI	GCTCC	2 cut(s)	113, 149
Lsp1109I	GCAGC	1 cut(s)	438
LweI	GCATC	2 cut(s)	99, 381
MaeII	ACGT	3 cut(s)	8, 69, 513
MaeIII	GTNAC	1 cut(s)	397
MalI	GATC	6 cut(s)	20, 242, 272, 281, 383, 547
MbiI	CCGCTC	2 cut(s)	144, 340
MboI	GATC	6 cut(s)	18, 240, 270, 279, 381, 545
MboII	GAAGA	4 cut(s)	238, 304, 508, 540
MflI	RGATCY	1 cut(s)	545
MhlI	GDGCHC	1 cut(s)	483
MroNI	GCCGGC	1 cut(s)	98
MslI	CAYNNNNRTG	3 cut(s)	293, 443, 516
MspI	CCGG	6 cut(s)	38, 60, 99, 355, 531, 543
MspR9I	CCNGG	3 cut(s)	39, 121, 443
Mva1269I	GAATGC	1 cut(s)	532
MvaI	CCWGG	2 cut(s)	121, 443
MvnI	CGCG	6 cut(s)	78, 176, 184, 305, 330, 485
MwoI	GCNNNNNNNGC	3 cut(s)	114, 482, 487
NaeI	GCCGGC	1 cut(s)	100
NciI	CCSGG	1 cut(s)	39
NdeII	GATC	6 cut(s)	18, 240, 270, 279, 381, 545
NgoMIV	GCCGGC	1 cut(s)	98
NlaIII	CATG	3 cut(s)	133, 217, 298
NlaIV	GGNNCC	2 cut(s)	109, 266
NmeAIII	GCCGAG	2 cut(s)	84, 404
NmuCI	GTSAC	1 cut(s)	397
PciSI	GCTCTTC	1 cut(s)	317
PcsI	WCGNNNNNNNCGW	8 cut(s)	14, 168, 228, 357, 372, 381, 390, 431
PctI	GAATGC	1 cut(s)	532
PdiI	GCCGGC	1 cut(s)	100
Pfl23II	CGTACG	1 cut(s)	9
PflFI	GACNNNGTC	1 cut(s)	28
PkrI	GCNGC	5 cut(s)	116, 202, 304, 339, 453
PmaCI	CACGTG	1 cut(s)	514
PmlI	CACGTG	1 cut(s)	514
Ppu21I	YACGTR	1 cut(s)	514
Psp6I	CCWGG	2 cut(s)	119, 441
PspCI	CACGTG	1 cut(s)	514
PspGI	CCWGG	2 cut(s)	119, 441
PspLI	CGTACG	1 cut(s)	9
PspN4I	GGNNCC	2 cut(s)	109, 266
PspPI	GGNCC	2 cut(s)	85, 357
PsuI	RGATCY	1 cut(s)	545
PsyI	GACNNNGTC	1 cut(s)	28
RigI	GGCCGGCC	1 cut(s)	102
RsaI	GTAC	2 cut(s)	11, 68
RsaNI	GTAC	2 cut(s)	10, 67
RseI	CAYNNNNRTG	3 cut(s)	293, 443, 516
Rsr2I	CGGWCCG	1 cut(s)	357
RsrII	CGGWCCG	1 cut(s)	357
SalI	GTCGAC	1 cut(s)	362
SapI	GCTCTTC	1 cut(s)	317
SatI	GCNGC	5 cut(s)	115, 201, 303, 338, 452
Sau3AI	GATC	6 cut(s)	18, 240, 270, 279, 381, 545
Sau96I	GGNCC	2 cut(s)	85, 357
ScrFI	CCNGG	3 cut(s)	39, 121, 443
SduI	GDGCHC	1 cut(s)	483
SetI	ASST	6 cut(s)	11, 29, 72, 129, 425, 516
SfaNI	GCATC	2 cut(s)	99, 381
SgrDI	CGTCGACG	1 cut(s)	362
SinI	GGWCC	2 cut(s)	85, 357
SmiMI	CAYNNNNRTG	3 cut(s)	293, 443, 516
StyD4I	CCNGG	3 cut(s)	37, 119, 441
StyI	CCWWGG	1 cut(s)	81
TaaI	ACNGT	1 cut(s)	361
TaiI	ACGT	3 cut(s)	11, 72, 516
TaqI	TCGA	2 cut(s)	135, 363
TauI	GCSGC	4 cut(s)	117, 203, 305, 340
TseFI	GTSAC	1 cut(s)	397
TseI	GCWGC	1 cut(s)	451
Tsp45I	GTSAC	1 cut(s)	397
TspDTI	ATGAA	2 cut(s)	230, 540
TspGWI	ACGGA	2 cut(s)	43, 515
Tth111I	GACNNNGTC	1 cut(s)	28
VneI	GTGCAC	1 cut(s)	479
VpaK11BI	GGWCC	2 cut(s)	85, 357
XmiI	GTMKAC	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.