Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0007469

Physical Location & Seq

Genomic Coordinates Forward (+)

5676758 .. 5682642

Gene Structure 5885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g07480.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGGTAGCGCCATACAAGATGCTTCCAAGGCTATTAAAGTTCGATCCCAAATATTCAAAGGGATACTACAGACGAGGTGCAGCTTATCTTGCTATGGGGAAATTTAAAGAAGCTTTAAAGGATTTTCAGCAGGTCAAAAGAATCTGTCCAAATGATCCTGATGCTACCAAGAAATTGAAGGAATGTGAGAAAGCAGTGATGAAGCTTAAATTTGCTGAAGCAATATCTGTACCGGAGGCTGAAAGGCGTCCTGTAGCTGATTCTATTAATTATCGTTCTATAGATGTGGAGCCACAATATGCCGGTGCAAGGATAGAAGGGGATGTTGTTACTTTGGATTTTGTGAAGAAAATGATGGAGGATTTCAAGAATCAGAAGAATTTACACCAACGATATGCGTTCCAAATTGTCTTACAGACGAAAGAAATGTTGCAAGCCATGCCTTCTCTGGTTGATATAAATATTGCTAAGGGCAATCATTTTACCGTTTGTGGTGACGTACATGGGCAGTTCTATGATCTTCTAAATATTTTTGAGCTTAACGGGCTTCCTTCAGATGAGAATCCATATCTATTCAATGGAGACTTTGTGGACAGGGGATCTTTTTCTTTGGAGGTGATCCTAACATTGTTTGCTTTTAAGTGCATGTCTCCATCAGCAATATATCTCGCAAGAGGAAATCATGAGAGCAAGAGCATGAATAGGATTTATGGTTTTGAGGGCGAGGTCCAGTCCAAATTAAGCGACAAGTTTGTGGAGCTGTTTGCTGAAGTTTTTTGTTGTCTACCACTGGCTCATGTAATAAATGGGAAGGTTTTTGTAGTCCATGGGGGTCTTTTCAGCGTTGATGGAGTGAAACTCAGCGACATTAGAGCAATTAATCGGTTTTGTGAGCCTCCTGAGGAAGGGTTAATGTGTGAATTGCTGTGGAGTGATCCACAGCCTGCACCTGGAAGAGGACCAAGCAAGCGAGGCGTGGGTCTTTCTTTTGGTGGCGATGTGACGAAAAGATTTTTGCAGGAAAACAATTTAGATTTAGTTGTGCGATCTCATGAAGTAAAGGACGAGGGTTATGAGATTGAGCATGATGGGAAACTTATCACTGTCTTTTCTGCTCCAAATTACTGTGATCAGATGGGTAACAAGGGTGCCTTTATCCGTTTCGAAGCACCAGATTTGAAGCCGAACATTGTTACTTTCTCAGCAGTGCCACATCCTGACGTCAAGCCAATGGCATATGCGAACAACTTCCTCCGAATGTTTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0016604 GO:0016607 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04010 map04010

Pfam Domains

Protein Families

Metallophos PPP5 TPR_1 TPR_11 TPR_16 TPR_8

Protein Analysis

423

Amino Acids

47.69

Weight (kDa)

6.77

Isoelectric Point (pI)

37.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42810 AT2G42810 AT2G42810 AT2G42810 AT2G42810
fragaria_vesca	FvH4_6g37780 FvH4_6g37780
malus_domestica	MD09G1156000.v1.1 MD12G1049700.v1.1 MD17G1142100.v1.1
prunus_persica	Prupe.3G168900_v2.0.a1 Prupe.3G168900_v2.0.a1
pyrus_communis	pycom09g07480 pycom17g13530
rosa_chinensis	RchiOBHm_Chr2g0150851
rosa_laevigata	RLG00000020512
rosa_multiflora	Rmu_co8451479.1_g000001 Rmu_sc0038225.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096910
rosa_rugosa	Rorug02G0422800 Rorug02G0422900
rosa_samantha	Rh2AG483200 Rh2CG469500 Rh2DG506500
rosa_wichuraiana	Rw2G039600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1224
Acc36I	ACCTGC	1 cut(s)	121
AccB1I	GGYRCC	1 cut(s)	1148
AccI	GTMKAC	1 cut(s)	784
AclWI	GGATC	5 cut(s)	38, 149, 607, 613, 929
AcsI	RAATTY	3 cut(s)	101, 209, 379
AcuI	CTGAAG	3 cut(s)	237, 537, 789
AcyI	GRCGYC	2 cut(s)	247, 1221
AfaI	GTAC	2 cut(s)	231, 501
AfiI	CCNNNNNNNGG	4 cut(s)	309, 905, 950, 956
AgsI	TTSAA	5 cut(s)	57, 178, 367, 577, 1180
AjnI	CCWGG	1 cut(s)	949
AluBI	AGCT	6 cut(s)	83, 113, 205, 257, 538, 760
AluI	AGCT	6 cut(s)	83, 113, 205, 257, 538, 760
Alw26I	GTCTC	2 cut(s)	576, 654
AlwI	GGATC	5 cut(s)	38, 149, 607, 613, 929
ApeKI	GCWGC	1 cut(s)	80
ApoI	RAATTY	3 cut(s)	101, 209, 379
AseI	ATTAAT	2 cut(s)	267, 879
Asp700I	GAANNNNTTC	1 cut(s)	1247
AspLEI	GCGC	1 cut(s)	10
AspS9I	GGNCC	2 cut(s)	727, 959
AsuHPI	GGTGA	2 cut(s)	506, 628
AsuII	TTCGAA	1 cut(s)	1164
AvaII	GGWCC	2 cut(s)	727, 959
AxyI	CCTNAGG	1 cut(s)	900
BanI	GGYRCC	1 cut(s)	1148
BbvI	GCAGC	1 cut(s)	92
BccI	CCATC	5 cut(s)	349, 661, 842, 1082, 1129
BciT130I	CCWGG	1 cut(s)	951
BciVI	GTATCC	1 cut(s)	56
BclI	TGATCA	1 cut(s)	1129
BcoDI	GTCTC	2 cut(s)	576, 654
BfmI	CTRYAG	3 cut(s)	67, 252, 279
BfoI	RGCGCY	1 cut(s)	11
BfuAI	ACCTGC	1 cut(s)	121
BfuI	GTATCC	1 cut(s)	56
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
Bme1390I	CCNGG	1 cut(s)	951
Bme18I	GGWCC	2 cut(s)	727, 959
BmgT120I	GGNCC	2 cut(s)	727, 959
BmiI	GGNNCC	2 cut(s)	291, 1150
BmrFI	CCNGG	1 cut(s)	951
BmsI	GCATC	2 cut(s)	9, 151
BplI	GAGNNNNNCTC	2 cut(s)	843, 875
Bpu10I	CCTNAGC	1 cut(s)	468
Bpu14I	TTCGAA	1 cut(s)	1164
BsaBI	GATNNNNATC	1 cut(s)	561
BsaHI	GRCGYC	2 cut(s)	247, 1221
BsaJI	CCNNGG	2 cut(s)	26, 826
BsaWI	WCCGGW	1 cut(s)	232
BsaXI	ACNNNNNCTCC	2 cut(s)	573, 603
Bsc4I	CCNNNNNNNGG	4 cut(s)	309, 905, 950, 956
Bse118I	RCCGGY	1 cut(s)	302
Bse1I	ACTGG	2 cut(s)	730, 795
Bse21I	CCTNAGG	1 cut(s)	900
Bse8I	GATNNNNATC	1 cut(s)	561
BseBI	CCWGG	1 cut(s)	951
BseDI	CCNNGG	2 cut(s)	26, 826
BseGI	GGATG	2 cut(s)	328, 1213
BseJI	GATNNNNATC	1 cut(s)	561
BseLI	CCNNNNNNNGG	4 cut(s)	309, 905, 950, 956
BseMII	CTCAG	3 cut(s)	874, 891, 1215
BseNI	ACTGG	2 cut(s)	730, 795
BseXI	GCAGC	1 cut(s)	92
BsgI	GTGCAG	2 cut(s)	99, 930
BshNI	GGYRCC	1 cut(s)	1148
BsiSI	CCGG	2 cut(s)	233, 303
BslI	CCNNNNNNNGG	4 cut(s)	309, 905, 950, 956
BsmAI	GTCTC	2 cut(s)	576, 654
Bsp119I	TTCGAA	1 cut(s)	1164
Bsp143I	GATC	8 cut(s)	43, 154, 517, 599, 618, 934, 1046, 1129
Bsp19I	CCATGG	1 cut(s)	826
BspCNI	CTCAG	3 cut(s)	873, 892, 1214
BspHI	TCATGA	2 cut(s)	682, 1051
BspLI	GGNNCC	2 cut(s)	291, 1150
BspMI	ACCTGC	1 cut(s)	121
BspPI	GGATC	5 cut(s)	38, 149, 607, 613, 929
BspT104I	TTCGAA	1 cut(s)	1164
BspT107I	GGYRCC	1 cut(s)	1148
BsrFI	RCCGGY	1 cut(s)	302
BsrI	ACTGG	2 cut(s)	730, 795
BssAI	RCCGGY	1 cut(s)	302
BssECI	CCNNGG	2 cut(s)	26, 826
BssMI	GATC	8 cut(s)	43, 154, 517, 599, 618, 934, 1046, 1129
BssNI	GRCGYC	2 cut(s)	247, 1221
BssT1I	CCWWGG	2 cut(s)	26, 826
Bst2UI	CCWGG	1 cut(s)	951
Bst4CI	ACNGT	3 cut(s)	487, 1105, 1127
Bst6I	CTCTTC	1 cut(s)	949
BstACI	GRCGYC	2 cut(s)	247, 1221
BstAPI	GCANNNNNTGC	1 cut(s)	439
BstBI	TTCGAA	1 cut(s)	1164
BstC8I	GCNNGC	3 cut(s)	435, 945, 968
BstDEI	CTNAG	4 cut(s)	468, 860, 900, 1201
BstDSI	CCRYGG	1 cut(s)	826
BstENI	CCTNNNNNAGG	2 cut(s)	903, 954
BstF5I	GGATG	2 cut(s)	328, 1213
BstH2I	RGCGCY	1 cut(s)	11
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	8 cut(s)	46, 157, 520, 602, 621, 937, 1049, 1132
BstMAI	GTCTC	2 cut(s)	576, 654
BstMBI	GATC	8 cut(s)	43, 154, 517, 599, 618, 934, 1046, 1129
BstMWI	GCNNNNNNNGC	5 cut(s)	28, 89, 439, 544, 972
BstNI	CCWGG	1 cut(s)	951
BstNSI	RCATGY	1 cut(s)	649
BstSCI	CCNGG	1 cut(s)	949
BstSFI	CTRYAG	3 cut(s)	67, 252, 279
BstV1I	GCAGC	1 cut(s)	92
BstX2I	RGATCY	1 cut(s)	599
BstYI	RGATCY	1 cut(s)	599
Bsu36I	CCTNAGG	1 cut(s)	900
BsuI	GTATCC	1 cut(s)	56
BtgI	CCRYGG	1 cut(s)	826
BtgZI	GCGATG	1 cut(s)	1011
BtsCI	GGATG	2 cut(s)	328, 1213
BtsI	GCAGTG	2 cut(s)	201, 1212
BtsIMutI	CAGTG	4 cut(s)	201, 788, 1101, 1212
BveI	ACCTGC	1 cut(s)	121
Cac8I	GCNNGC	3 cut(s)	435, 945, 968
CciI	TCATGA	2 cut(s)	682, 1051
CfoI	GCGC	1 cut(s)	10
Cfr10I	RCCGGY	1 cut(s)	302
Cfr13I	GGNCC	2 cut(s)	727, 959
CseI	GACGC	1 cut(s)	236
Csp6I	GTAC	2 cut(s)	230, 500
CviAII	CATG	9 cut(s)	439, 503, 646, 683, 697, 797, 827, 1052, 1085
CviQI	GTAC	2 cut(s)	230, 500
DdeI	CTNAG	4 cut(s)	468, 860, 900, 1201
DpnI	GATC	8 cut(s)	45, 156, 519, 601, 620, 936, 1048, 1131
DpnII	GATC	8 cut(s)	43, 154, 517, 599, 618, 934, 1046, 1129
DraI	TTTAAA	2 cut(s)	106, 117
Eam1104I	CTCTTC	1 cut(s)	949
EarI	CTCTTC	1 cut(s)	949
Eco130I	CCWWGG	2 cut(s)	26, 826
Eco47I	GGWCC	2 cut(s)	727, 959
Eco57I	CTGAAG	3 cut(s)	237, 537, 789
Eco81I	CCTNAGG	1 cut(s)	900
EcoNI	CCTNNNNNAGG	2 cut(s)	903, 954
EcoRII	CCWGG	1 cut(s)	949
EcoT14I	CCWWGG	2 cut(s)	26, 826
ErhI	CCWWGG	2 cut(s)	26, 826
FaeI	CATG	9 cut(s)	442, 506, 649, 686, 700, 800, 830, 1055, 1088
FalI	AAGNNNNNCTT	2 cut(s)	1136, 1168
FatI	CATG	9 cut(s)	438, 502, 645, 682, 696, 796, 826, 1051, 1084
FauNDI	CATATG	1 cut(s)	1237
FbaI	TGATCA	1 cut(s)	1129
FblI	GTMKAC	1 cut(s)	784
Fnu4HI	GCNGC	1 cut(s)	81
FokI	GGATG	2 cut(s)	335, 1200
Fsp4HI	GCNGC	1 cut(s)	81
GlaI	GCGC	1 cut(s)	9
GluI	GCNGC	1 cut(s)	81
HaeII	RGCGCY	1 cut(s)	11
HapII	CCGG	2 cut(s)	233, 303
HgaI	GACGC	1 cut(s)	236
HhaI	GCGC	1 cut(s)	10
Hin1I	GRCGYC	2 cut(s)	247, 1221
Hin1II	CATG	9 cut(s)	442, 506, 649, 686, 700, 800, 830, 1055, 1088
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HindIII	AAGCTT	2 cut(s)	111, 203
HinfI	GANTC	4 cut(s)	141, 260, 370, 562
HpaII	CCGG	2 cut(s)	233, 303
HphI	GGTGA	2 cut(s)	506, 628
Hpy166II	GTNNAC	2 cut(s)	592, 785
Hpy188I	TCNGA	4 cut(s)	375, 556, 1134, 1256
Hpy188III	TCNNGA	6 cut(s)	158, 367, 683, 899, 1052, 1217
Hpy8I	GTNNAC	2 cut(s)	592, 785
HpyAV	CCTTC	6 cut(s)	172, 311, 453, 561, 805, 899
HpyCH4III	ACNGT	3 cut(s)	487, 1105, 1127
HpyCH4IV	ACGT	2 cut(s)	498, 1221
HpyCH4V	TGCA	6 cut(s)	80, 308, 433, 645, 947, 1018
HpyF10VI	GCNNNNNNNGC	5 cut(s)	28, 89, 439, 544, 972
HpyF3I	CTNAG	4 cut(s)	468, 860, 900, 1201
HpySE526I	ACGT	2 cut(s)	498, 1221
Hsp92I	GRCGYC	2 cut(s)	247, 1221
Hsp92II	CATG	9 cut(s)	442, 506, 649, 686, 700, 800, 830, 1055, 1088
HspAI	GCGC	1 cut(s)	8
Ksp22I	TGATCA	1 cut(s)	1129
Kzo9I	GATC	8 cut(s)	43, 154, 517, 599, 618, 934, 1046, 1129
LmnI	GCTCC	3 cut(s)	289, 757, 1120
Lsp1109I	GCAGC	1 cut(s)	92
LweI	GCATC	2 cut(s)	9, 151
MaeII	ACGT	2 cut(s)	498, 1221
MaeIII	GTNAC	5 cut(s)	328, 494, 1000, 1139, 1192
MalI	GATC	8 cut(s)	45, 156, 519, 601, 620, 936, 1048, 1131
MboI	GATC	8 cut(s)	43, 154, 517, 599, 618, 934, 1046, 1129
MboII	GAAGA	4 cut(s)	358, 388, 512, 966
MflI	RGATCY	1 cut(s)	599
MroXI	GAANNNNTTC	1 cut(s)	1247
MspI	CCGG	2 cut(s)	233, 303
MspR9I	CCNGG	1 cut(s)	951
MvaI	CCWGG	1 cut(s)	951
MwoI	GCNNNNNNNGC	5 cut(s)	28, 89, 439, 544, 972
NcoI	CCATGG	1 cut(s)	826
NdeI	CATATG	1 cut(s)	1237
NdeII	GATC	8 cut(s)	43, 154, 517, 599, 618, 934, 1046, 1129
NlaIII	CATG	9 cut(s)	442, 506, 649, 686, 700, 800, 830, 1055, 1088
NlaIV	GGNNCC	2 cut(s)	291, 1150
NmuCI	GTSAC	2 cut(s)	494, 1000
NspI	RCATGY	1 cut(s)	649
NspV	TTCGAA	1 cut(s)	1164
PagI	TCATGA	2 cut(s)	682, 1051
PdmI	GAANNNNTTC	1 cut(s)	1247
PfeI	GAWTC	4 cut(s)	141, 260, 370, 562
PkrI	GCNGC	1 cut(s)	82
PshBI	ATTAAT	2 cut(s)	267, 879
Psp6I	CCWGG	1 cut(s)	949
PspGI	CCWGG	1 cut(s)	949
PspN4I	GGNNCC	2 cut(s)	291, 1150
PspPI	GGNCC	2 cut(s)	727, 959
PsuI	RGATCY	1 cut(s)	599
RsaI	GTAC	2 cut(s)	231, 501
RsaNI	GTAC	2 cut(s)	230, 500
SatI	GCNGC	1 cut(s)	81
Sau3AI	GATC	8 cut(s)	43, 154, 517, 599, 618, 934, 1046, 1129
Sau96I	GGNCC	2 cut(s)	727, 959
ScrFI	CCNGG	1 cut(s)	951
SfaNI	GCATC	2 cut(s)	9, 151
SfcI	CTRYAG	3 cut(s)	67, 252, 279
SfuI	TTCGAA	1 cut(s)	1164
SinI	GGWCC	2 cut(s)	727, 959
SspI	AATATT	3 cut(s)	53, 463, 529
StyD4I	CCNGG	1 cut(s)	949
StyI	CCWWGG	2 cut(s)	26, 826
TaaI	ACNGT	3 cut(s)	487, 1105, 1127
TaiI	ACGT	2 cut(s)	501, 1224
TaqI	TCGA	2 cut(s)	42, 1164
TfiI	GAWTC	4 cut(s)	141, 260, 370, 562
TscAI	CASTG	4 cut(s)	201, 795, 1108, 1212
TseFI	GTSAC	2 cut(s)	494, 1000
TseI	GCWGC	1 cut(s)	80
Tsp45I	GTSAC	2 cut(s)	494, 1000
TspDTI	ATGAA	3 cut(s)	215, 713, 1068
TspGWI	ACGGA	1 cut(s)	1148
TspRI	CASTG	4 cut(s)	201, 795, 1108, 1212
VpaK11BI	GGWCC	2 cut(s)	727, 959
VspI	ATTAAT	2 cut(s)	267, 879
XagI	CCTNNNNNAGG	2 cut(s)	903, 954
XapI	RAATTY	3 cut(s)	101, 209, 379
XceI	RCATGY	1 cut(s)	649
XcmI	CCANNNNNNNNNTGG	1 cut(s)	445
XmiI	GTMKAC	1 cut(s)	784
XmnI	GAANNNNTTC	1 cut(s)	1247
ZraI	GACGTC	1 cut(s)	1222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.