Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0007469

Physical Location & Seq

Genomic Coordinates Reverse (-)

73009728 .. 73016950

Gene Structure 7223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG506500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGGCTATTGAAGTTGATCCTAGATATTCAAAGGGATACTACAGGCGAGGTGCAGCTTCTCTTGCTATGGGGAAATTCAAAGAGGCACTAAAAGATTTCCAGCAGGTTAAAAAAATCTGTCCAAATGATCCTGATGCTACCAAGAAACTGAAGGAATGTGAGAAGGCAGTGATGAAGCTTAAATTTGCTGAGGCAATTTCTGTACCAGAGTCTCAAAGGCGTCCCATAGCTGATTCTATTAATTATCGTTCTATAGAAGTGGAGCCACAATATTCTGGTGCAAGGATAGAAGGAGATGTTGTTACTTTGGATTTTGTGAAGAAAATGATGGAGGATTTTAAGAATCAGAAGACTTTACACCAAAGATATGCATTCCAAATTGTGTTACAAACGAAAGAAATGTTGCAAACGCTGCCTTCTCTTGTTGATATAAATGTTCCAAATGGCAACCATTTTACTGTTTGTGGGGACGTACATGGTCAGTTCTATGATCTCCTAAACATTTTTGAGCTTAATGGGCTTCCTTCAGAGGAGAATCCGTATCTATTCAATGGTGATTTTGTGGACAGAGGATCATTTTCGCTGGAGGTCATTCTAACACTGTTTGCATTTAAGTGCATGTCTCCATCAGCAATATATCTTGCAAGGGGGAACCATGAAAGCAAAAGCATGAACAGGATATATGGTTTTGAGGGCGAGGTCCAGTCCAAGTTAAGCGAAAAATTTGTGGAACTATTTGCTGAAGTGTTTTGCTGTTTACCGTTGGCTCATGTAATAAACGGCAAGGTGTTTGTAGTTCATGGGGGTCTTTTTAGTGTTGATGGGGTGAAACTGAGTGATATTAAAGCAATTAATCGGTTTTGTGAACCTCCTGAGGAAGGATTGATGTGTGAATTGCTATGGAGTGATCCACAACCTGCACCTGGAAGAGGCCCTAGCAAGCGAGGTGTAGGTCTTTCTTTTGGTGGTGATGTGACAAAAAGATTTTTGCAGGACAACAATTTAGATTTAGTTGTGCGCTCTCATGAAGTAAAGGATGAGGGATATGAGATTGAGCATGATGGTAAACTCATCACTGTATTTTCTGCCCCAAATTACTGTGATCAGATGGGTAACAAAGGCGCCTTTATCCGTTTTGAAGCACCAGATTTGAAGCCAAATATAGTCACTTTTTCAGCAGTGCCGCATCCTGATGTGAAGCCAATGGCATATGCGAATAACTTCCTCCGACTCTTTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0016604 GO:0016607 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04010 map04010

Pfam Domains

Protein Families

Metallophos PPP5 TPR_1 TPR_11 TPR_16 TPR_8

Protein Analysis

413

Amino Acids

46.5

Weight (kDa)

6.05

Isoelectric Point (pI)

37.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_1	PF00515	11 - 43	1.9e-07	Tetratricopeptide repeat
TPR_2	PF07719	11 - 43	4.9e-06	Tetratricopeptide repeat
PPP5	PF08321	50 - 143	4.4e-29	PPP5 TPR repeat region
Metallophos	PF00149	152 - 345	1e-38	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42810 AT2G42810 AT2G42810 AT2G42810 AT2G42810
fragaria_vesca	FvH4_6g37780 FvH4_6g37780
malus_domestica	MD09G1156000.v1.1 MD12G1049700.v1.1 MD17G1142100.v1.1
prunus_persica	Prupe.3G168900_v2.0.a1 Prupe.3G168900_v2.0.a1
pyrus_communis	pycom09g07480 pycom17g13530
rosa_chinensis	RchiOBHm_Chr2g0150851
rosa_laevigata	RLG00000020512
rosa_multiflora	Rmu_co8451479.1_g000001 Rmu_sc0038225.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096910
rosa_rugosa	Rorug02G0422800 Rorug02G0422900
rosa_samantha	Rh2AG483200 Rh2CG469500 Rh2DG506500
rosa_wichuraiana	Rw2G039600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	94, 925
AccB1I	GGYRCC	1 cut(s)	1121
AciI	CCGC	1 cut(s)	1184
AclWI	GGATC	4 cut(s)	11, 122, 580, 902
AcsI	RAATTY	3 cut(s)	74, 182, 722
AcuI	CTGAAG	3 cut(s)	170, 510, 762
AcyI	GRCGYC	2 cut(s)	220, 1122
AfaI	GTAC	2 cut(s)	204, 474
AfiI	CCNNNNNNNGG	3 cut(s)	878, 923, 929
AgsI	TTSAA	6 cut(s)	11, 30, 79, 550, 1139, 1153
AjnI	CCWGG	1 cut(s)	922
AluBI	AGCT	4 cut(s)	56, 178, 230, 511
AluI	AGCT	4 cut(s)	56, 178, 230, 511
Alw26I	GTCTC	2 cut(s)	216, 627
AlwI	GGATC	4 cut(s)	11, 122, 580, 902
AoxI	GGCC	1 cut(s)	931
ApeKI	GCWGC	2 cut(s)	53, 412
ApoI	RAATTY	3 cut(s)	74, 182, 722
AseI	ATTAAT	2 cut(s)	240, 852
Asp700I	GAANNNNTTC	1 cut(s)	1220
AspLEI	GCGC	2 cut(s)	1020, 1124
AspS9I	GGNCC	2 cut(s)	700, 932
AsuHPI	GGTGA	3 cut(s)	566, 838, 980
AvaII	GGWCC	1 cut(s)	700
AxyI	CCTNAGG	1 cut(s)	873
BanI	GGYRCC	1 cut(s)	1121
BbsI	GAAGAC	1 cut(s)	356
BbvCI	CCTCAGC	1 cut(s)	189
BbvI	GCAGC	2 cut(s)	65, 399
BccI	CCATC	5 cut(s)	322, 634, 815, 1055, 1102
BceAI	ACGGC	1 cut(s)	796
BciT130I	CCWGG	1 cut(s)	924
BciVI	GTATCC	1 cut(s)	29
BclI	TGATCA	1 cut(s)	1102
BcoDI	GTCTC	2 cut(s)	216, 627
BfaI	CTAG	2 cut(s)	21, 936
BfmI	CTRYAG	2 cut(s)	40, 252
BfoI	RGCGCY	1 cut(s)	1125
BfuAI	ACCTGC	2 cut(s)	94, 925
BfuI	GTATCC	1 cut(s)	29
BisI	GCNGC	3 cut(s)	54, 413, 1184
BlsI	GCNGC	3 cut(s)	55, 414, 1185
Bme1390I	CCNGG	1 cut(s)	924
Bme18I	GGWCC	1 cut(s)	700
BmgT120I	GGNCC	2 cut(s)	700, 932
BmiI	GGNNCC	3 cut(s)	264, 653, 1123
BmrFI	CCNGG	1 cut(s)	924
BmsI	GCATC	2 cut(s)	124, 1195
BpiI	GAAGAC	1 cut(s)	356
BpmI	CTGGAG	1 cut(s)	605
Bpu10I	CCTNAGC	1 cut(s)	189
BsaHI	GRCGYC	2 cut(s)	220, 1122
BsaXI	ACNNNNNCTCC	4 cut(s)	285, 315, 524, 554
Bsc4I	CCNNNNNNNGG	3 cut(s)	878, 923, 929
Bse1I	ACTGG	1 cut(s)	703
Bse21I	CCTNAGG	1 cut(s)	873
BseBI	CCWGG	1 cut(s)	924
BseGI	GGATG	2 cut(s)	1042, 1186
BseLI	CCNNNNNNNGG	3 cut(s)	878, 923, 929
BseMII	CTCAG	3 cut(s)	180, 824, 864
BseNI	ACTGG	1 cut(s)	703
BseRI	GAGGAG	1 cut(s)	545
BseXI	GCAGC	2 cut(s)	65, 399
BsgI	GTGCAG	2 cut(s)	72, 903
BshFI	GGCC	1 cut(s)	933
BshNI	GGYRCC	1 cut(s)	1121
BslFI	GGGAC	2 cut(s)	207, 482
BslI	CCNNNNNNNGG	3 cut(s)	878, 923, 929
BsmAI	GTCTC	2 cut(s)	216, 627
BsmFI	GGGAC	2 cut(s)	207, 482
BsmI	GAATGC	1 cut(s)	371
BsnI	GGCC	1 cut(s)	933
Bsp143I	GATC	6 cut(s)	16, 127, 490, 572, 907, 1102
BspACI	CCGC	1 cut(s)	1184
BspANI	GGCC	1 cut(s)	933
BspCNI	CTCAG	3 cut(s)	181, 825, 865
BspHI	TCATGA	1 cut(s)	1024
BspLI	GGNNCC	3 cut(s)	264, 653, 1123
BspMI	ACCTGC	2 cut(s)	94, 925
BspPI	GGATC	4 cut(s)	11, 122, 580, 902
BspT107I	GGYRCC	1 cut(s)	1121
BsrI	ACTGG	1 cut(s)	703
BssMI	GATC	6 cut(s)	16, 127, 490, 572, 907, 1102
BssNI	GRCGYC	2 cut(s)	220, 1122
Bst2UI	CCWGG	1 cut(s)	924
Bst4CI	ACNGT	5 cut(s)	460, 603, 762, 1078, 1100
Bst6I	CTCTTC	1 cut(s)	922
BstACI	GRCGYC	2 cut(s)	220, 1122
BstAPI	GCANNNNNTGC	1 cut(s)	412
BstC8I	GCNNGC	1 cut(s)	941
BstDEI	CTNAG	3 cut(s)	189, 833, 873
BstENI	CCTNNNNNAGG	2 cut(s)	876, 927
BstF5I	GGATG	2 cut(s)	1042, 1186
BstH2I	RGCGCY	1 cut(s)	1125
BstHHI	GCGC	2 cut(s)	1020, 1124
BstKTI	GATC	6 cut(s)	19, 130, 493, 575, 910, 1105
BstMAI	GTCTC	2 cut(s)	216, 627
BstMBI	GATC	6 cut(s)	16, 127, 490, 572, 907, 1102
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 412, 517
BstNI	CCWGG	1 cut(s)	924
BstNSI	RCATGY	1 cut(s)	622
BstSCI	CCNGG	1 cut(s)	922
BstSFI	CTRYAG	2 cut(s)	40, 252
BstV1I	GCAGC	2 cut(s)	65, 399
BstV2I	GAAGAC	1 cut(s)	356
Bsu36I	CCTNAGG	1 cut(s)	873
BsuI	GTATCC	1 cut(s)	29
BsuRI	GGCC	1 cut(s)	933
BtsCI	GGATG	2 cut(s)	1042, 1186
BtsI	GCAGTG	2 cut(s)	174, 1185
BtsIMutI	CAGTG	4 cut(s)	174, 599, 1074, 1185
BveI	ACCTGC	2 cut(s)	94, 925
Cac8I	GCNNGC	1 cut(s)	941
CciI	TCATGA	1 cut(s)	1024
CfoI	GCGC	2 cut(s)	1020, 1124
Cfr13I	GGNCC	2 cut(s)	700, 932
CseI	GACGC	1 cut(s)	209
Csp6I	GTAC	2 cut(s)	203, 473
CviAII	CATG	8 cut(s)	476, 619, 656, 670, 770, 800, 1025, 1058
CviQI	GTAC	2 cut(s)	203, 473
DdeI	CTNAG	3 cut(s)	189, 833, 873
DinI	GGCGCC	1 cut(s)	1123
DpnI	GATC	6 cut(s)	18, 129, 492, 574, 909, 1104
DpnII	GATC	6 cut(s)	16, 127, 490, 572, 907, 1102
Eam1104I	CTCTTC	1 cut(s)	922
EarI	CTCTTC	1 cut(s)	922
Eco47I	GGWCC	1 cut(s)	700
Eco57I	CTGAAG	3 cut(s)	170, 510, 762
Eco81I	CCTNAGG	1 cut(s)	873
EcoNI	CCTNNNNNAGG	2 cut(s)	876, 927
EcoO109I	RGGNCCY	1 cut(s)	932
EcoRII	CCWGG	1 cut(s)	922
EcoT22I	ATGCAT	1 cut(s)	373
EgeI	GGCGCC	1 cut(s)	1123
EheI	GGCGCC	1 cut(s)	1123
FaeI	CATG	8 cut(s)	479, 622, 659, 673, 773, 803, 1028, 1061
FaqI	GGGAC	2 cut(s)	207, 482
FatI	CATG	8 cut(s)	475, 618, 655, 669, 769, 799, 1024, 1057
FauNDI	CATATG	1 cut(s)	1210
FbaI	TGATCA	1 cut(s)	1102
Fnu4HI	GCNGC	3 cut(s)	54, 413, 1184
FokI	GGATG	2 cut(s)	1049, 1173
Fsp4HI	GCNGC	3 cut(s)	54, 413, 1184
FspBI	CTAG	2 cut(s)	21, 936
GlaI	GCGC	2 cut(s)	1019, 1123
GluI	GCNGC	3 cut(s)	54, 413, 1184
GsuI	CTGGAG	1 cut(s)	605
HaeII	RGCGCY	1 cut(s)	1125
HaeIII	GGCC	1 cut(s)	933
HgaI	GACGC	1 cut(s)	209
HhaI	GCGC	2 cut(s)	1020, 1124
Hin1I	GRCGYC	2 cut(s)	220, 1122
Hin1II	CATG	8 cut(s)	479, 622, 659, 673, 773, 803, 1028, 1061
Hin6I	GCGC	2 cut(s)	1018, 1122
HinP1I	GCGC	2 cut(s)	1018, 1122
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	5 cut(s)	209, 233, 343, 535, 1230
HphI	GGTGA	3 cut(s)	566, 838, 980
Hpy166II	GTNNAC	4 cut(s)	565, 758, 866, 1067
Hpy188I	TCNGA	4 cut(s)	348, 529, 1107, 1229
Hpy188III	TCNNGA	4 cut(s)	131, 872, 1025, 1190
Hpy8I	GTNNAC	4 cut(s)	565, 758, 866, 1067
HpyAV	CCTTC	6 cut(s)	145, 157, 284, 426, 534, 872
HpyCH4III	ACNGT	5 cut(s)	460, 603, 762, 1078, 1100
HpyCH4IV	ACGT	1 cut(s)	471
HpyCH4V	TGCA	9 cut(s)	53, 281, 371, 406, 608, 618, 644, 920, 991
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 412, 517
HpyF3I	CTNAG	3 cut(s)	189, 833, 873
HpySE526I	ACGT	1 cut(s)	471
Hsp92I	GRCGYC	2 cut(s)	220, 1122
Hsp92II	CATG	8 cut(s)	479, 622, 659, 673, 773, 803, 1028, 1061
HspAI	GCGC	2 cut(s)	1018, 1122
KasI	GGCGCC	1 cut(s)	1121
Ksp22I	TGATCA	1 cut(s)	1102
Kzo9I	GATC	6 cut(s)	16, 127, 490, 572, 907, 1102
LmnI	GCTCC	1 cut(s)	262
Lsp1109I	GCAGC	2 cut(s)	65, 399
LweI	GCATC	2 cut(s)	124, 1195
MaeI	CTAG	2 cut(s)	21, 936
MaeII	ACGT	1 cut(s)	471
MaeIII	GTNAC	5 cut(s)	301, 384, 973, 1112, 1165
MalI	GATC	6 cut(s)	18, 129, 492, 574, 909, 1104
MboI	GATC	6 cut(s)	16, 127, 490, 572, 907, 1102
MboII	GAAGA	3 cut(s)	331, 361, 939
Mly113I	GGCGCC	1 cut(s)	1122
MlyI	GAGTC	2 cut(s)	218, 1224
Mph1103I	ATGCAT	1 cut(s)	373
MroXI	GAANNNNTTC	1 cut(s)	1220
MseI	TTAA	9 cut(s)	108, 180, 240, 339, 513, 612, 713, 843, 852
MslI	CAYNNNNRTG	2 cut(s)	613, 1191
MspR9I	CCNGG	1 cut(s)	924
Mva1269I	GAATGC	1 cut(s)	371
MvaI	CCWGG	1 cut(s)	924
MwoI	GCNNNNNNNGC	3 cut(s)	62, 412, 517
NarI	GGCGCC	1 cut(s)	1122
NdeI	CATATG	1 cut(s)	1210
NdeII	GATC	6 cut(s)	16, 127, 490, 572, 907, 1102
NlaIII	CATG	8 cut(s)	479, 622, 659, 673, 773, 803, 1028, 1061
NlaIV	GGNNCC	3 cut(s)	264, 653, 1123
NmuCI	GTSAC	2 cut(s)	973, 1165
NsiI	ATGCAT	1 cut(s)	373
NspI	RCATGY	1 cut(s)	622
PagI	TCATGA	1 cut(s)	1024
PctI	GAATGC	1 cut(s)	371
PdmI	GAANNNNTTC	1 cut(s)	1220
PfeI	GAWTC	3 cut(s)	233, 343, 535
PkrI	GCNGC	3 cut(s)	55, 414, 1185
PleI	GAGTC	2 cut(s)	217, 1224
PluTI	GGCGCC	1 cut(s)	1125
PpsI	GAGTC	2 cut(s)	217, 1224
PshBI	ATTAAT	2 cut(s)	240, 852
Psp6I	CCWGG	1 cut(s)	922
PspGI	CCWGG	1 cut(s)	922
PspN4I	GGNNCC	3 cut(s)	264, 653, 1123
PspPI	GGNCC	2 cut(s)	700, 932
RsaI	GTAC	2 cut(s)	204, 474
RsaNI	GTAC	2 cut(s)	203, 473
RseI	CAYNNNNRTG	2 cut(s)	613, 1191
SaqAI	TTAA	9 cut(s)	108, 180, 240, 339, 513, 612, 713, 843, 852
SatI	GCNGC	3 cut(s)	54, 413, 1184
Sau3AI	GATC	6 cut(s)	16, 127, 490, 572, 907, 1102
Sau96I	GGNCC	2 cut(s)	700, 932
SchI	GAGTC	2 cut(s)	218, 1224
ScrFI	CCNGG	1 cut(s)	924
SfaNI	GCATC	2 cut(s)	124, 1195
SfcI	CTRYAG	2 cut(s)	40, 252
SfoI	GGCGCC	1 cut(s)	1123
SinI	GGWCC	1 cut(s)	700
SmiMI	CAYNNNNRTG	2 cut(s)	613, 1191
SsiI	CCGC	1 cut(s)	1184
SspDI	GGCGCC	1 cut(s)	1121
SspI	AATATT	1 cut(s)	272
SspMI	CTAG	2 cut(s)	21, 936
StyD4I	CCNGG	1 cut(s)	922
TaaI	ACNGT	5 cut(s)	460, 603, 762, 1078, 1100
TaiI	ACGT	1 cut(s)	474
TauI	GCSGC	1 cut(s)	1186
TfiI	GAWTC	3 cut(s)	233, 343, 535
Tru1I	TTAA	9 cut(s)	108, 180, 240, 339, 513, 612, 713, 843, 852
Tru9I	TTAA	9 cut(s)	108, 180, 240, 339, 513, 612, 713, 843, 852
TscAI	CASTG	4 cut(s)	174, 606, 1081, 1185
TseFI	GTSAC	2 cut(s)	973, 1165
TseI	GCWGC	2 cut(s)	53, 412
Tsp45I	GTSAC	2 cut(s)	973, 1165
TspDTI	ATGAA	5 cut(s)	188, 672, 686, 788, 1041
TspGWI	ACGGA	2 cut(s)	528, 1121
TspRI	CASTG	4 cut(s)	174, 606, 1081, 1185
VpaK11BI	GGWCC	1 cut(s)	700
VspI	ATTAAT	2 cut(s)	240, 852
XagI	CCTNNNNNAGG	2 cut(s)	876, 927
XapI	RAATTY	3 cut(s)	74, 182, 722
XceI	RCATGY	1 cut(s)	622
XmnI	GAANNNNTTC	1 cut(s)	1220
XspI	CTAG	2 cut(s)	21, 936
Zsp2I	ATGCAT	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.