Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038225.1

Orthogroup ID

OG0007469

Physical Location & Seq

Genomic Coordinates Reverse (-)

250 .. 2053

Gene Structure 1804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038225.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

atgttgcaaacgctgccttctcttgttgatataaatgttccaaatggaaaccattttactgtttgtggggacgtacatggtcagttctatgatctcctaaacatttttgagcttaatgggcttccttcagaggagaatccgtatctattcaatggtgattttgtggacagaggatcattttcgctggaggtcattctaacactgtttgcatttaagtgcatgtctccatcagcaatatatcttgcaagggggaaccatgaaagcaaaagcatgaacaggatatatggttttgagggcgaggtccagtccaagttaagcgaaaaatttgtggaactatttgctgaagtgttttgttgtttaccgttggctcatgtaataaacggcaaggtgtttgtagttcatgggggtctttttagtgttgatggggtgaaactgagtgatattaaagcaattaatcggttttgtgaacctcctgaggaaggattgatgtgtgaattgctatggagtgatccacaacctgcacctggaagaggccctagcaagcgaggtgtaggtctttcttttggtggtgatgtgacaaaaagatttttgcaggacaacaatttagatttagttgtgcgctctcatgaagtaaaggatgagggatatgagattgagcatgatggtaaactcatcactgtattttctgccccaaattactgtgatcagatgggtaacaaaggcgcctttatccgttttgaagcaccagatttgaagccaaatatagtcactttttcagcagtgccgcatcctgatgtgaagccaatggcatatgcaaataacttcctccgactctttcagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0016604 GO:0016607 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04010 map04010

Pfam Domains

Protein Families

Metallophos PPP5 TPR_1 TPR_11 TPR_16 TPR_8

Protein Analysis

280

Amino Acids

31.17

Weight (kDa)

5.18

Isoelectric Point (pI)

37.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42810 AT2G42810 AT2G42810 AT2G42810 AT2G42810
fragaria_vesca	FvH4_6g37780 FvH4_6g37780
malus_domestica	MD09G1156000.v1.1 MD12G1049700.v1.1 MD17G1142100.v1.1
prunus_persica	Prupe.3G168900_v2.0.a1 Prupe.3G168900_v2.0.a1
pyrus_communis	pycom09g07480 pycom17g13530
rosa_chinensis	RchiOBHm_Chr2g0150851
rosa_laevigata	RLG00000020512
rosa_multiflora	Rmu_co8451479.1_g000001 Rmu_sc0038225.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096910
rosa_rugosa	Rorug02G0422800 Rorug02G0422900
rosa_samantha	Rh2AG483200 Rh2CG469500 Rh2DG506500
rosa_wichuraiana	Rw2G039600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	526
AccB1I	GGYRCC	1 cut(s)	722
AciI	CCGC	1 cut(s)	785
AclWI	GGATC	2 cut(s)	181, 503
AcsI	RAATTY	1 cut(s)	323
AcuI	CTGAAG	2 cut(s)	111, 363
AcyI	GRCGYC	1 cut(s)	723
AfaI	GTAC	1 cut(s)	75
AfiI	CCNNNNNNNGG	3 cut(s)	479, 524, 530
AgsI	TTSAA	3 cut(s)	151, 740, 754
AjnI	CCWGG	1 cut(s)	523
AluBI	AGCT	1 cut(s)	112
AluI	AGCT	1 cut(s)	112
Alw26I	GTCTC	1 cut(s)	228
AlwI	GGATC	2 cut(s)	181, 503
AoxI	GGCC	1 cut(s)	532
ApeKI	GCWGC	1 cut(s)	13
ApoI	RAATTY	1 cut(s)	323
AseI	ATTAAT	1 cut(s)	453
AspLEI	GCGC	2 cut(s)	621, 725
AspS9I	GGNCC	2 cut(s)	301, 533
AsuHPI	GGTGA	3 cut(s)	167, 439, 581
AvaII	GGWCC	1 cut(s)	301
AxyI	CCTNAGG	1 cut(s)	474
BanI	GGYRCC	1 cut(s)	722
BccI	CCATC	4 cut(s)	235, 416, 656, 703
BceAI	ACGGC	1 cut(s)	397
BciT130I	CCWGG	1 cut(s)	525
BclI	TGATCA	1 cut(s)	703
BcoDI	GTCTC	1 cut(s)	228
BfaI	CTAG	1 cut(s)	537
BfoI	RGCGCY	1 cut(s)	726
BfuAI	ACCTGC	1 cut(s)	526
BisI	GCNGC	2 cut(s)	14, 785
BlsI	GCNGC	2 cut(s)	15, 786
Bme1390I	CCNGG	1 cut(s)	525
Bme18I	GGWCC	1 cut(s)	301
BmgT120I	GGNCC	2 cut(s)	301, 533
BmiI	GGNNCC	2 cut(s)	254, 724
BmrFI	CCNGG	1 cut(s)	525
BmsI	GCATC	1 cut(s)	796
BpmI	CTGGAG	1 cut(s)	206
BsaHI	GRCGYC	1 cut(s)	723
BsaXI	ACNNNNNCTCC	2 cut(s)	125, 155
Bsc4I	CCNNNNNNNGG	3 cut(s)	479, 524, 530
Bse1I	ACTGG	1 cut(s)	304
Bse21I	CCTNAGG	1 cut(s)	474
BseBI	CCWGG	1 cut(s)	525
BseGI	GGATG	2 cut(s)	643, 787
BseLI	CCNNNNNNNGG	3 cut(s)	479, 524, 530
BseMII	CTCAG	2 cut(s)	425, 465
BseNI	ACTGG	1 cut(s)	304
BseRI	GAGGAG	1 cut(s)	146
BsgI	GTGCAG	1 cut(s)	504
BshFI	GGCC	1 cut(s)	534
BshNI	GGYRCC	1 cut(s)	722
BslFI	GGGAC	1 cut(s)	83
BslI	CCNNNNNNNGG	3 cut(s)	479, 524, 530
BsmAI	GTCTC	1 cut(s)	228
BsmFI	GGGAC	1 cut(s)	83
BsnI	GGCC	1 cut(s)	534
Bsp143I	GATC	4 cut(s)	91, 173, 508, 703
BspACI	CCGC	1 cut(s)	785
BspANI	GGCC	1 cut(s)	534
BspCNI	CTCAG	2 cut(s)	426, 466
BspHI	TCATGA	1 cut(s)	625
BspLI	GGNNCC	2 cut(s)	254, 724
BspMI	ACCTGC	1 cut(s)	526
BspPI	GGATC	2 cut(s)	181, 503
BspT107I	GGYRCC	1 cut(s)	722
BsrI	ACTGG	1 cut(s)	304
BssMI	GATC	4 cut(s)	91, 173, 508, 703
BssNI	GRCGYC	1 cut(s)	723
Bst2UI	CCWGG	1 cut(s)	525
Bst4CI	ACNGT	5 cut(s)	61, 204, 363, 679, 701
Bst6I	CTCTTC	1 cut(s)	523
BstACI	GRCGYC	1 cut(s)	723
BstAPI	GCANNNNNTGC	1 cut(s)	13
BstC8I	GCNNGC	1 cut(s)	542
BstDEI	CTNAG	2 cut(s)	434, 474
BstENI	CCTNNNNNAGG	2 cut(s)	477, 528
BstF5I	GGATG	2 cut(s)	643, 787
BstH2I	RGCGCY	1 cut(s)	726
BstHHI	GCGC	2 cut(s)	621, 725
BstKTI	GATC	4 cut(s)	94, 176, 511, 706
BstMAI	GTCTC	1 cut(s)	228
BstMBI	GATC	4 cut(s)	91, 173, 508, 703
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 118
BstNI	CCWGG	1 cut(s)	525
BstNSI	RCATGY	1 cut(s)	223
BstSCI	CCNGG	1 cut(s)	523
Bsu36I	CCTNAGG	1 cut(s)	474
BsuRI	GGCC	1 cut(s)	534
BtsCI	GGATG	2 cut(s)	643, 787
BtsI	GCAGTG	1 cut(s)	786
BtsIMutI	CAGTG	3 cut(s)	200, 675, 786
BveI	ACCTGC	1 cut(s)	526
Cac8I	GCNNGC	1 cut(s)	542
CciI	TCATGA	1 cut(s)	625
CfoI	GCGC	2 cut(s)	621, 725
Cfr13I	GGNCC	2 cut(s)	301, 533
Csp6I	GTAC	1 cut(s)	74
CviAII	CATG	8 cut(s)	77, 220, 257, 271, 371, 401, 626, 659
CviJI	RGCY	6 cut(s)	112, 121, 368, 534, 757, 802
CviKI_1	RGCY	6 cut(s)	112, 121, 368, 534, 757, 802
CviQI	GTAC	1 cut(s)	74
DdeI	CTNAG	2 cut(s)	434, 474
DinI	GGCGCC	1 cut(s)	724
DpnI	GATC	4 cut(s)	93, 175, 510, 705
DpnII	GATC	4 cut(s)	91, 173, 508, 703
Eam1104I	CTCTTC	1 cut(s)	523
EarI	CTCTTC	1 cut(s)	523
Eco47I	GGWCC	1 cut(s)	301
Eco57I	CTGAAG	2 cut(s)	111, 363
Eco81I	CCTNAGG	1 cut(s)	474
EcoNI	CCTNNNNNAGG	2 cut(s)	477, 528
EcoO109I	RGGNCCY	1 cut(s)	533
EcoRII	CCWGG	1 cut(s)	523
EgeI	GGCGCC	1 cut(s)	724
EheI	GGCGCC	1 cut(s)	724
FaeI	CATG	8 cut(s)	80, 223, 260, 274, 374, 404, 629, 662
FaqI	GGGAC	1 cut(s)	83
FatI	CATG	8 cut(s)	76, 219, 256, 270, 370, 400, 625, 658
FauNDI	CATATG	1 cut(s)	811
FbaI	TGATCA	1 cut(s)	703
Fnu4HI	GCNGC	2 cut(s)	14, 785
FokI	GGATG	2 cut(s)	650, 774
Fsp4HI	GCNGC	2 cut(s)	14, 785
FspBI	CTAG	1 cut(s)	537
GlaI	GCGC	2 cut(s)	620, 724
GluI	GCNGC	2 cut(s)	14, 785
GsuI	CTGGAG	1 cut(s)	206
HaeII	RGCGCY	1 cut(s)	726
HaeIII	GGCC	1 cut(s)	534
HhaI	GCGC	2 cut(s)	621, 725
Hin1I	GRCGYC	1 cut(s)	723
Hin1II	CATG	8 cut(s)	80, 223, 260, 274, 374, 404, 629, 662
Hin6I	GCGC	2 cut(s)	619, 723
HinP1I	GCGC	2 cut(s)	619, 723
HinfI	GANTC	2 cut(s)	136, 831
HphI	GGTGA	3 cut(s)	167, 439, 581
Hpy166II	GTNNAC	4 cut(s)	166, 359, 467, 668
Hpy188I	TCNGA	3 cut(s)	130, 708, 830
Hpy188III	TCNNGA	3 cut(s)	473, 626, 791
Hpy8I	GTNNAC	4 cut(s)	166, 359, 467, 668
HpyAV	CCTTC	3 cut(s)	27, 135, 473
HpyCH4III	ACNGT	5 cut(s)	61, 204, 363, 679, 701
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	7 cut(s)	7, 209, 219, 245, 521, 592, 815
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 118
HpyF3I	CTNAG	2 cut(s)	434, 474
HpySE526I	ACGT	1 cut(s)	72
Hsp92I	GRCGYC	1 cut(s)	723
Hsp92II	CATG	8 cut(s)	80, 223, 260, 274, 374, 404, 629, 662
HspAI	GCGC	2 cut(s)	619, 723
KasI	GGCGCC	1 cut(s)	722
Ksp22I	TGATCA	1 cut(s)	703
Kzo9I	GATC	4 cut(s)	91, 173, 508, 703
LweI	GCATC	1 cut(s)	796
MaeI	CTAG	1 cut(s)	537
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	3 cut(s)	574, 713, 766
MalI	GATC	4 cut(s)	93, 175, 510, 705
MboI	GATC	4 cut(s)	91, 173, 508, 703
MboII	GAAGA	1 cut(s)	540
MluCI	AATT	5 cut(s)	323, 450, 494, 601, 694
Mly113I	GGCGCC	1 cut(s)	723
MlyI	GAGTC	1 cut(s)	825
MseI	TTAA	5 cut(s)	114, 213, 314, 444, 453
MslI	CAYNNNNRTG	2 cut(s)	214, 792
MspR9I	CCNGG	1 cut(s)	525
MvaI	CCWGG	1 cut(s)	525
MwoI	GCNNNNNNNGC	2 cut(s)	13, 118
NarI	GGCGCC	1 cut(s)	723
NdeI	CATATG	1 cut(s)	811
NdeII	GATC	4 cut(s)	91, 173, 508, 703
NlaIII	CATG	8 cut(s)	80, 223, 260, 274, 374, 404, 629, 662
NlaIV	GGNNCC	2 cut(s)	254, 724
NmuCI	GTSAC	2 cut(s)	574, 766
NspI	RCATGY	1 cut(s)	223
PagI	TCATGA	1 cut(s)	625
PfeI	GAWTC	1 cut(s)	136
PkrI	GCNGC	2 cut(s)	15, 786
PleI	GAGTC	1 cut(s)	825
PluTI	GGCGCC	1 cut(s)	726
PpsI	GAGTC	1 cut(s)	825
PshBI	ATTAAT	1 cut(s)	453
Psp6I	CCWGG	1 cut(s)	523
PspGI	CCWGG	1 cut(s)	523
PspN4I	GGNNCC	2 cut(s)	254, 724
PspPI	GGNCC	2 cut(s)	301, 533
RsaI	GTAC	1 cut(s)	75
RsaNI	GTAC	1 cut(s)	74
RseI	CAYNNNNRTG	2 cut(s)	214, 792
SaqAI	TTAA	5 cut(s)	114, 213, 314, 444, 453
SatI	GCNGC	2 cut(s)	14, 785
Sau3AI	GATC	4 cut(s)	91, 173, 508, 703
Sau96I	GGNCC	2 cut(s)	301, 533
SchI	GAGTC	1 cut(s)	825
ScrFI	CCNGG	1 cut(s)	525
SfaNI	GCATC	1 cut(s)	796
SfoI	GGCGCC	1 cut(s)	724
SinI	GGWCC	1 cut(s)	301
SmiMI	CAYNNNNRTG	2 cut(s)	214, 792
Sse9I	AATT	5 cut(s)	323, 450, 494, 601, 694
SsiI	CCGC	1 cut(s)	785
SspDI	GGCGCC	1 cut(s)	722
SspMI	CTAG	1 cut(s)	537
StyD4I	CCNGG	1 cut(s)	523
TaaI	ACNGT	5 cut(s)	61, 204, 363, 679, 701
TaiI	ACGT	1 cut(s)	75
TasI	AATT	5 cut(s)	323, 450, 494, 601, 694
TauI	GCSGC	1 cut(s)	787
TfiI	GAWTC	1 cut(s)	136
Tru1I	TTAA	5 cut(s)	114, 213, 314, 444, 453
Tru9I	TTAA	5 cut(s)	114, 213, 314, 444, 453
TscAI	CASTG	3 cut(s)	207, 682, 786
TseFI	GTSAC	2 cut(s)	574, 766
TseI	GCWGC	1 cut(s)	13
Tsp45I	GTSAC	2 cut(s)	574, 766
TspDTI	ATGAA	4 cut(s)	273, 287, 389, 642
TspGWI	ACGGA	2 cut(s)	129, 722
TspRI	CASTG	3 cut(s)	207, 682, 786
VpaK11BI	GGWCC	1 cut(s)	301
VspI	ATTAAT	1 cut(s)	453
XagI	CCTNNNNNAGG	2 cut(s)	477, 528
XapI	RAATTY	1 cut(s)	323
XceI	RCATGY	1 cut(s)	223
XspI	CTAG	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.