AT2G42980

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
17875005 .. 17876779
1775 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G42980.1

Sequence Viewer

Length: 1584 bp
ATGTCGACCAAACTCAGTATATTTCTTCTTGGCCTGATTTTGTTCTCTGTCTCACCATTTTCCGGAGACTGTAGAACTCTTTCAGGGAAACATGAGCATTACTCTTCATCCCTTAACATGTTTAATTCCCAAGATACGATGCGTTTCAGTTCTGCTTCTTCTTCAACAAGCAACGATTGCGGTTTCTCCTCCAAGGAACATGATCCTTCCAAGGAACATACCAGAGAATCGGTGAAGCCTCAATCAAGGATTAAACAAGAAACAAAGAGAACAACACATTCAGTTGTTGATCTTCAAATCCAAGACCTCACAAGAATTAAGACGCTTCATGCTCGGTTCAACAAATCGAAGAAACAGAAAAACGAGAAGGTTAGGAAGAAGATTACCTCAGATATTTCTTTGGTGGGAGCTCCAGAGGTTTCACCGGGGAAGCTGATAGCAACACTTGAGTCTGGTATGACGCTCGGTTCTGGTGAATACTTCATGGACGTGCTTGTGGGCACACCACCAAAACACTTCTCATTGATTCTTGACACAGGGAGTGACTTAAACTGGCTCCAATGCCTTCCTTGCTACGACTGTTTCCATCAAAACGGTATGTTTTATGATCCAAAAACGTCCGCTTCATTCAAGAACATAACATGCAATGACCCTAGATGCAGCCTTATCTCATCACCCGATCCTCCAGTACAGTGCGAATCAGATAACCAATCGTGCCCTTATTTCTACTGGTATGGAGACAGGTCGAACACAACTGGAGATTTCGCGGTTGAGACTTTCACCGTTAATCTCACGACCACTGAGGGAGGAAGCTCAGAGTACAAGGTGGGAAATATGATGTTTGGGTGTGGCCATTGGAACCGAGGTCTCTTCAGTGGTGCTTCAGGTCTGCTTGGGTTAGGAAGAGGACCTCTTTCGTTTTCTTCTCAGCTTCAGTCTCTCTATGGCCATTCCTTTTCCTACTGTCTTGTCGATAGAAACAGCAACACCAATGTAAGCAGCAAGTTGATATTTGGAGAAGACAAAGATTTGCTGAACCACACAAATCTGAACTTCACTTCTTTTGTGAACGGGAAGGAGAATTCAGTGGAGACATTTTACTATATACAGATCAAATCCATTCTAGTCGGCGGCAAAGCTCTAGACATACCTGAAGAAACATGGAATATCTCATCAGATGGTGATGGTGGAACCATCATTGATTCTGGTACAACCTTAAGCTATTTCGCAGAACCTGCATATGAGATCATCAAAAACAAGTTTGCAGAGAAAATGAAAGAAAACTACCCAATATTTAGAGATTTCCCGGTCCTTGATCCTTGCTTCAATGTATCTGGCATAGAGGAGAACAACATCCACCTACCTGAGCTCGGGATTGCATTTGTAGACGGCACAGTTTGGAATTTCCCTGCTGAGAACTCCTTCATTTGGTTGAGCGAGGATTTGGTTTGCTTGGCAATTCTAGGAACTCCAAAATCTACCTTCTCGATCATCGGAAACTACCAGCAACAGAATTTCCATATACTCTATGATACAAAGAGGTCTAGGCTAGGGTTCACACCCACAAAGTGTGCGGACATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

527

Amino Acids

58.65

Weight (kDa)

5.84

Isoelectric Point (pI)

42.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asp PF00026 159 - 212 5.1e-07 Eukaryotic aspartyl protease
TAXi_N PF14543 160 - 339 6.9e-51 Xylanase inhibitor N-terminal
Asp PF00026 294 - 521 2.7e-07 Eukaryotic aspartyl protease
TAXi_C PF14541 367 - 520 4e-36 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013789)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1243
AccI GTMKAC 2 cut(s) 5, 1386
AccII CGCG 1 cut(s) 767
AccIII TCCGGA 1 cut(s) 62
AciI CCGC 5 cut(s) 180, 621, 767, 1131, 1574
AclWI GGATC 4 cut(s) 197, 602, 674, 1310
AcoI YGGCCR 2 cut(s) 850, 946
AcsI RAATTY 3 cut(s) 1081, 1402, 1513
AcuI CTGAAG 4 cut(s) 856, 867, 917, 1173
AdeI CACNNNGTG 1 cut(s) 1569
AfaI GTAC 3 cut(s) 690, 821, 1210
AfiI CCNNNNNNNGG 3 cut(s) 62, 1370, 1428
AflII CTTAAG 1 cut(s) 1216
AflIII ACRYGT 1 cut(s) 117
AgsI TTSAA 5 cut(s) 165, 296, 340, 631, 1327
AjiI CACGTC 1 cut(s) 490
AluBI AGCT 7 cut(s) 410, 433, 813, 931, 1139, 1221, 1369
AluI AGCT 7 cut(s) 410, 433, 813, 931, 1139, 1221, 1369
Alw21I GWGCWC 2 cut(s) 412, 1371
Alw26I GTCTC 7 cut(s) 55, 60, 732, 767, 872, 942, 1085
AlwI GGATC 4 cut(s) 197, 602, 674, 1310
AlwNI CAGNNNCTG 1 cut(s) 1235
Ama87I CYCGRG 1 cut(s) 1370
Aor13HI TCCGGA 1 cut(s) 62
AoxI GGCC 3 cut(s) 31, 850, 946
ApeKI GCWGC 2 cut(s) 660, 999
ApoI RAATTY 3 cut(s) 1081, 1402, 1513
Asp700I GAANNNNTTC 2 cut(s) 79, 1421
AspS9I GGNCC 2 cut(s) 908, 1309
AsuC2I CCSGG 2 cut(s) 426, 1307
AsuHPI GGTGA 7 cut(s) 45, 244, 414, 485, 666, 772, 1193
AvaI CYCGRG 1 cut(s) 1370
AvaII GGWCC 2 cut(s) 908, 1309
BaeGI GKGCMC 2 cut(s) 503, 719
BalI TGGCCA 2 cut(s) 852, 948
BanII GRGCYC 2 cut(s) 412, 1371
BbsI GAAGAC 1 cut(s) 1026
Bbv12I GWGCWC 2 cut(s) 412, 1371
BbvI GCAGC 2 cut(s) 672, 1011
BccI CCATC 4 cut(s) 594, 1172, 1178, 1202
BceAI ACGGC 1 cut(s) 1405
BcnI CCSGG 2 cut(s) 426, 1307
BcoDI GTCTC 7 cut(s) 55, 60, 732, 767, 872, 942, 1085
BfaI CTAG 6 cut(s) 654, 1124, 1142, 1463, 1545, 1550
BfmI CTRYAG 1 cut(s) 70
BfrI CTTAAG 1 cut(s) 1216
BfuAI ACCTGC 1 cut(s) 1243
BisI GCNGC 3 cut(s) 661, 1000, 1132
BlsI GCNGC 3 cut(s) 662, 1001, 1133
Bme1390I CCNGG 2 cut(s) 426, 1307
Bme18I GGWCC 2 cut(s) 908, 1309
BmeT110I CYCGRG 1 cut(s) 1370
BmgBI CACGTC 1 cut(s) 490
BmgT120I GGNCC 2 cut(s) 908, 1309
BmiI GGNNCC 3 cut(s) 557, 860, 1192
BmrFI CCNGG 2 cut(s) 426, 1307
BmsI GCATC 2 cut(s) 129, 647
BpiI GAAGAC 1 cut(s) 1026
BplI GAGNNNNNCTC 2 cut(s) 86, 118
BpmI CTGGAG 3 cut(s) 396, 669, 777
Bpu10I CCTNAGC 1 cut(s) 1365
BpuEI CTTGAG 1 cut(s) 467
BpuMI CCSGG 2 cut(s) 426, 1307
BsaI GGTCTC 1 cut(s) 872
BsaJI CCNNGG 4 cut(s) 192, 210, 425, 862
BsaWI WCCGGW 1 cut(s) 62
Bsc4I CCNNNNNNNGG 3 cut(s) 62, 1370, 1428
Bse1I ACTGG 4 cut(s) 557, 686, 734, 760
Bse3DI GCAATG 1 cut(s) 652
BseAI TCCGGA 1 cut(s) 62
BseDI CCNNGG 4 cut(s) 192, 210, 425, 862
BseGI GGATG 2 cut(s) 107, 1353
BseLI CCNNNNNNNGG 3 cut(s) 62, 1370, 1428
BseMI GCAATG 1 cut(s) 652
BseMII CTCAG 7 cut(s) 28, 402, 792, 828, 941, 1356, 1404
BseNI ACTGG 4 cut(s) 557, 686, 734, 760
BseRI GAGGAG 2 cut(s) 178, 1358
BseSI GKGCMC 2 cut(s) 503, 719
BseXI GCAGC 2 cut(s) 672, 1011
Bsh1236I CGCG 1 cut(s) 767
BshFI GGCC 3 cut(s) 33, 852, 948
BsiHKAI GWGCWC 2 cut(s) 412, 1371
BsiHKCI CYCGRG 1 cut(s) 1370
BsiSI CCGG 3 cut(s) 63, 425, 1307
BslI CCNNNNNNNGG 3 cut(s) 62, 1370, 1428
BsmAI GTCTC 7 cut(s) 55, 60, 732, 767, 872, 942, 1085
BsnI GGCC 3 cut(s) 33, 852, 948
Bso31I GGTCTC 1 cut(s) 872
BsoBI CYCGRG 1 cut(s) 1370
Bsp1286I GDGCHC 4 cut(s) 412, 503, 719, 1371
Bsp13I TCCGGA 1 cut(s) 62
Bsp143I GATC 8 cut(s) 202, 289, 607, 679, 1110, 1245, 1315, 1488
BspACI CCGC 5 cut(s) 180, 621, 767, 1131, 1574
BspANI GGCC 3 cut(s) 33, 852, 948
BspCNI CTCAG 7 cut(s) 27, 401, 793, 827, 940, 1357, 1405
BspEI TCCGGA 1 cut(s) 62
BspFNI CGCG 1 cut(s) 767
BspLI GGNNCC 3 cut(s) 557, 860, 1192
BspMI ACCTGC 1 cut(s) 1243
BspPI GGATC 4 cut(s) 197, 602, 674, 1310
BspTI CTTAAG 1 cut(s) 1216
BspTNI GGTCTC 1 cut(s) 872
BsrDI GCAATG 1 cut(s) 652
BsrI ACTGG 4 cut(s) 557, 686, 734, 760
BssECI CCNNGG 4 cut(s) 192, 210, 425, 862
BssMI GATC 8 cut(s) 202, 289, 607, 679, 1110, 1245, 1315, 1488
BssT1I CCWWGG 2 cut(s) 192, 210
Bst4CI ACNGT 7 cut(s) 71, 581, 596, 693, 784, 965, 1396
Bst6I CTCTTC 3 cut(s) 109, 875, 898
BstAFI CTTAAG 1 cut(s) 1216
BstAPI GCANNNNNTGC 2 cut(s) 177, 1235
BstDEI CTNAG 7 cut(s) 14, 388, 801, 814, 927, 1365, 1413
BstF5I GGATG 2 cut(s) 107, 1353
BstFNI CGCG 1 cut(s) 767
BstKTI GATC 8 cut(s) 205, 292, 610, 682, 1113, 1248, 1318, 1491
BstMAI GTCTC 7 cut(s) 55, 60, 732, 767, 872, 942, 1085
BstMBI GATC 8 cut(s) 202, 289, 607, 679, 1110, 1245, 1315, 1488
BstMWI GCNNNNNNNGC 3 cut(s) 177, 570, 1235
BstNSI RCATGY 2 cut(s) 121, 645
BstSCI CCNGG 2 cut(s) 424, 1305
BstSFI CTRYAG 1 cut(s) 70
BstSLI GKGCMC 2 cut(s) 503, 719
BstUI CGCG 1 cut(s) 767
BstV1I GCAGC 2 cut(s) 672, 1011
BstV2I GAAGAC 1 cut(s) 1026
BsuRI GGCC 3 cut(s) 33, 852, 948
BtrI CACGTC 1 cut(s) 490
BtsCI GGATG 2 cut(s) 107, 1353
BtsIMutI CAGTG 4 cut(s) 698, 798, 880, 1092
BveI ACCTGC 1 cut(s) 1243
CaiI CAGNNNCTG 1 cut(s) 1235
Cfr13I GGNCC 2 cut(s) 908, 1309
CseI GACGC 2 cut(s) 331, 469
Csp6I GTAC 3 cut(s) 689, 820, 1209
CviAII CATG 7 cut(s) 92, 118, 200, 329, 484, 642, 1161
CviQI GTAC 3 cut(s) 689, 820, 1209
DdeI CTNAG 7 cut(s) 14, 388, 801, 814, 927, 1365, 1413
DpnI GATC 8 cut(s) 204, 291, 609, 681, 1112, 1247, 1317, 1490
DpnII GATC 8 cut(s) 202, 289, 607, 679, 1110, 1245, 1315, 1488
DraIII CACNNNGTG 1 cut(s) 1569
EaeI YGGCCR 2 cut(s) 850, 946
Eam1104I CTCTTC 3 cut(s) 109, 875, 898
EarI CTCTTC 3 cut(s) 109, 875, 898
Ecl136II GAGCTC 2 cut(s) 410, 1369
Eco130I CCWWGG 2 cut(s) 192, 210
Eco24I GRGCYC 2 cut(s) 412, 1371
Eco31I GGTCTC 1 cut(s) 872
Eco47I GGWCC 2 cut(s) 908, 1309
Eco53kI GAGCTC 2 cut(s) 410, 1369
Eco57I CTGAAG 4 cut(s) 856, 867, 917, 1173
Eco88I CYCGRG 1 cut(s) 1370
EcoICRI GAGCTC 2 cut(s) 410, 1369
EcoO109I RGGNCCY 1 cut(s) 908
EcoRI GAATTC 1 cut(s) 1081
EcoT14I CCWWGG 2 cut(s) 192, 210
EcoT38I GRGCYC 2 cut(s) 412, 1371
ErhI CCWWGG 2 cut(s) 192, 210
FaeI CATG 7 cut(s) 95, 121, 203, 332, 487, 645, 1164
FatI CATG 7 cut(s) 91, 117, 199, 328, 483, 641, 1160
FauNDI CATATG 1 cut(s) 1240
FblI GTMKAC 2 cut(s) 5, 1386
Fnu4HI GCNGC 3 cut(s) 661, 1000, 1132
FokI GGATG 2 cut(s) 94, 1340
FriOI GRGCYC 2 cut(s) 412, 1371
Fsp4HI GCNGC 3 cut(s) 661, 1000, 1132
FspBI CTAG 6 cut(s) 654, 1124, 1142, 1463, 1545, 1550
GluI GCNGC 3 cut(s) 661, 1000, 1132
GsuI CTGGAG 3 cut(s) 396, 669, 777
HaeIII GGCC 3 cut(s) 33, 852, 948
HapII CCGG 3 cut(s) 63, 425, 1307
HgaI GACGC 2 cut(s) 331, 469
Hin1II CATG 7 cut(s) 95, 121, 203, 332, 487, 645, 1164
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 5 cut(s) 227, 449, 526, 698, 1202
HpaII CCGG 3 cut(s) 63, 425, 1307
HphI GGTGA 7 cut(s) 45, 244, 414, 485, 666, 772, 1193
Hpy166II GTNNAC 4 cut(s) 6, 1069, 1387, 1557
Hpy188I TCNGA 6 cut(s) 391, 703, 817, 1050, 1177, 1496
Hpy188III TCNNGA 8 cut(s) 63, 413, 530, 631, 793, 1142, 1372, 1486
Hpy8I GTNNAC 4 cut(s) 6, 1069, 1387, 1557
HpyAV CCTTC 6 cut(s) 216, 361, 575, 1069, 1432, 1492
HpyCH4III ACNGT 7 cut(s) 71, 581, 596, 693, 784, 965, 1396
HpyCH4IV ACGT 2 cut(s) 489, 617
HpyCH4V TGCA 5 cut(s) 645, 660, 1238, 1265, 1379
HpyF10VI GCNNNNNNNGC 3 cut(s) 177, 570, 1235
HpyF3I CTNAG 7 cut(s) 14, 388, 801, 814, 927, 1365, 1413
HpySE526I ACGT 2 cut(s) 489, 617
Hsp92II CATG 7 cut(s) 95, 121, 203, 332, 487, 645, 1164
Kpn2I TCCGGA 1 cut(s) 62
Kzo9I GATC 8 cut(s) 202, 289, 607, 679, 1110, 1245, 1315, 1488
LmnI GCTCC 3 cut(s) 407, 415, 561
Lsp1109I GCAGC 2 cut(s) 672, 1011
LweI GCATC 2 cut(s) 129, 647
MaeI CTAG 6 cut(s) 654, 1124, 1142, 1463, 1545, 1550
MaeII ACGT 2 cut(s) 489, 617
MaeIII GTNAC 1 cut(s) 542
MalI GATC 8 cut(s) 204, 291, 609, 681, 1112, 1247, 1317, 1490
MboI GATC 8 cut(s) 202, 289, 607, 679, 1110, 1245, 1315, 1488
MhlI GDGCHC 4 cut(s) 412, 503, 719, 1371
MlsI TGGCCA 2 cut(s) 852, 948
MluCI AATT 6 cut(s) 124, 315, 1081, 1402, 1458, 1513
MluNI TGGCCA 2 cut(s) 852, 948
MlyI GAGTC 1 cut(s) 458
Mox20I TGGCCA 2 cut(s) 852, 948
MroI TCCGGA 1 cut(s) 62
MroXI GAANNNNTTC 2 cut(s) 79, 1421
MscI TGGCCA 2 cut(s) 852, 948
MseI TTAA 7 cut(s) 114, 123, 252, 318, 548, 786, 1217
MslI CAYNNNNRTG 1 cut(s) 488
Msp20I TGGCCA 2 cut(s) 852, 948
MspCI CTTAAG 1 cut(s) 1216
MspI CCGG 3 cut(s) 63, 425, 1307
MspR9I CCNGG 2 cut(s) 426, 1307
MvnI CGCG 1 cut(s) 767
MwoI GCNNNNNNNGC 3 cut(s) 177, 570, 1235
NciI CCSGG 2 cut(s) 426, 1307
NdeI CATATG 1 cut(s) 1240
NdeII GATC 8 cut(s) 202, 289, 607, 679, 1110, 1245, 1315, 1488
NlaIII CATG 7 cut(s) 95, 121, 203, 332, 487, 645, 1164
NlaIV GGNNCC 3 cut(s) 557, 860, 1192
NmuCI GTSAC 1 cut(s) 542
NspI RCATGY 2 cut(s) 121, 645
PciI ACATGT 1 cut(s) 117
PdmI GAANNNNTTC 2 cut(s) 79, 1421
PfeI GAWTC 4 cut(s) 227, 526, 698, 1202
PkrI GCNGC 3 cut(s) 662, 1001, 1133
PleI GAGTC 1 cut(s) 457
PpsI GAGTC 1 cut(s) 457
PpuMI RGGWCCY 1 cut(s) 908
PscI ACATGT 1 cut(s) 117
Psp124BI GAGCTC 2 cut(s) 412, 1371
Psp5II RGGWCCY 1 cut(s) 908
PspN4I GGNNCC 3 cut(s) 557, 860, 1192
PspPI GGNCC 2 cut(s) 908, 1309
PspPPI RGGWCCY 1 cut(s) 908
PstNI CAGNNNCTG 1 cut(s) 1235
RsaI GTAC 3 cut(s) 690, 821, 1210
RsaNI GTAC 3 cut(s) 689, 820, 1209
RseI CAYNNNNRTG 1 cut(s) 488
SacI GAGCTC 2 cut(s) 412, 1371
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 7 cut(s) 114, 123, 252, 318, 548, 786, 1217
SatI GCNGC 3 cut(s) 661, 1000, 1132
Sau3AI GATC 8 cut(s) 202, 289, 607, 679, 1110, 1245, 1315, 1488
Sau96I GGNCC 2 cut(s) 908, 1309
SchI GAGTC 1 cut(s) 458
ScrFI CCNGG 2 cut(s) 426, 1307
SduI GDGCHC 4 cut(s) 412, 503, 719, 1371
SfaNI GCATC 2 cut(s) 129, 647
SfcI CTRYAG 1 cut(s) 70
SinI GGWCC 2 cut(s) 908, 1309
SmiMI CAYNNNNRTG 1 cut(s) 488
SmlI CTYRAG 2 cut(s) 446, 1216
SmoI CTYRAG 2 cut(s) 446, 1216
Sse9I AATT 6 cut(s) 124, 315, 1081, 1402, 1458, 1513
SsiI CCGC 5 cut(s) 180, 621, 767, 1131, 1574
SspI AATATT 1 cut(s) 1293
SspMI CTAG 6 cut(s) 654, 1124, 1142, 1463, 1545, 1550
SstI GAGCTC 2 cut(s) 412, 1371
StyD4I CCNGG 2 cut(s) 424, 1305
StyI CCWWGG 2 cut(s) 192, 210
TaaI ACNGT 7 cut(s) 71, 581, 596, 693, 784, 965, 1396
TaiI ACGT 2 cut(s) 492, 620
TaqI TCGA 5 cut(s) 5, 347, 746, 972, 1487
TasI AATT 6 cut(s) 124, 315, 1081, 1402, 1458, 1513
TatI WGTACW 2 cut(s) 688, 819
TauI GCSGC 1 cut(s) 1134
TfiI GAWTC 4 cut(s) 227, 526, 698, 1202
Tru1I TTAA 7 cut(s) 114, 123, 252, 318, 548, 786, 1217
Tru9I TTAA 7 cut(s) 114, 123, 252, 318, 548, 786, 1217
TscAI CASTG 4 cut(s) 698, 805, 880, 1092
TseFI GTSAC 1 cut(s) 542
TseI GCWGC 2 cut(s) 660, 999
Tsp45I GTSAC 1 cut(s) 542
TspDTI ATGAA 6 cut(s) 96, 317, 472, 615, 1289, 1414
TspRI CASTG 4 cut(s) 698, 805, 880, 1092
Vha464I CTTAAG 1 cut(s) 1216
VpaK11BI GGWCC 2 cut(s) 908, 1309
XapI RAATTY 3 cut(s) 1081, 1402, 1513
XbaI TCTAGA 1 cut(s) 1141
XceI RCATGY 2 cut(s) 121, 645
XmiI GTMKAC 2 cut(s) 5, 1386
XmnI GAANNNNTTC 2 cut(s) 79, 1421
XspI CTAG 6 cut(s) 654, 1124, 1142, 1463, 1545, 1550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.