Rh1AG285600

Aspartic proteinase CDR1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0013789
Physical Location & Seq
Forward (+)
51434114 .. 51435442
1329 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG285600.1

Sequence Viewer

Length: 1080 bp
ATGCCCTCACCACTGATATTCTCCCTCATTGCACTCATTTTAGTCATCAACATCCCTCCCTCTATTTCTTCTCCTAAAACACCAGTCAAGGGTTTCGAGGCACGTCTCATTCACCGTGACTCTCCTGAATCTCCGCTCCACAACCCCAAGGCAACGCATGCTGATCTTATCAAATCAGCTCGTCAGAGAACCTTGGCCAGACAAAACTACTTCAAAAGGCTAATGTCAAATACGCAATGCCCCGATCCTAATGGTATATGCAAGTACACGATTGCGTATGGAGATGGAAGATCTTCTGAAGGAGTCCTTGCTACAGAAACAATCACGCTCGAACATGATGGATCAAGTGGAAGCGCTAGCTTACCAAATATGATTTTCGGGTGCGGTCACTCTAATGTAGACCCGAGATCAGGTTACAATCCACCCGGAATTGTGGGACTAAGCAGAGAACCTTCTTCCCTGGTAGGCCAAATTTCGTACCCTCATGTTTCGTATTGCATATCAGCTAATAATGAAGGCAACCATAGCTCTGTTAAGTTCGGCTCTGTAGCAGTCATCACTGAGAATACTACTCAAACCCCATTGTTAACTGGTCCACTTGATTTTTACTCTGTAAGCCTAGAAGGCATTAGTGTTGATGGTACAATGTTGGACATTCCGAAATCAGTGTTCAATATGACGCCAGAAGGAGAAGGAGGGGTCTTCATGGATACAGGAACAGATCATACTCAGCTGGTACTGCCAGCATTTTATGCAGTCACCAATAAAATAGAGGATATCTTGTCGGATTTCAAATCCTTACCAGATGTGGATGGCAGGTTTCCAGTGTGTTACAACGATACGAATTTTAGATTGGATTCGACACCAGAAATAGTATTCCAATTTACAGGACTGGAGTTTCCGTTGAGTGCCAATAACACTTGGGATCAGAACTCTCTGGGATACCATTGTTTGGCTATATTGCCAGCATTTAGGGGTCATTCTGTTCTTGGAATGTACCAGCAAAGGCACGTAAATGTTGGATATGACTTCAATAACAACATTGTATCTTTGAAGTATAGCGACAATAACTGCGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

359

Amino Acids

39.11

Weight (kDa)

5.51

Isoelectric Point (pI)

37.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 72 - 182 3.4e-20 Xylanase inhibitor N-terminal
TAXi_C PF14541 203 - 349 5.5e-23 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013789)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42980
malus_domestica MD01G1081400.v1.1 MD01G1081500.v1.1 MD01G1081600.v1.1 MD01G1081900.v1.1
prunus_persica Prupe.2G189100_v2.0.a1
pyrus_communis pycom07g14880
rosa_chinensis RchiOBHm_Chr1g0359581
rosa_laevigata RLG00000027860
rosa_multiflora Rmu_sc0002556.1_g000022
rosa_roxburghii Rroxscaffold_4G00296910
rosa_samantha Rh1AG285600 Rh1BG251700 Rh1BG251800 Rh1DG280900 Rh1DG281000
rosa_wichuraiana Rw1G025390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 807
AccB7I CCANNNNNTGG 1 cut(s) 952
AccBSI CCGCTC 1 cut(s) 136
AccI GTMKAC 1 cut(s) 399
AciI CCGC 2 cut(s) 134, 384
AclWI GGATC 3 cut(s) 239, 349, 933
AcoI YGGCCR 1 cut(s) 195
AcsI RAATTY 2 cut(s) 471, 844
AcuI CTGAAG 1 cut(s) 318
AcyI GRCGYC 1 cut(s) 680
AfaI GTAC 5 cut(s) 266, 479, 643, 738, 998
AfeI AGCGCT 1 cut(s) 355
AfiI CCNNNNNNNGG 3 cut(s) 89, 410, 952
AgsI TTSAA 5 cut(s) 214, 673, 793, 1033, 1054
AjiI CACGTC 1 cut(s) 104
AjnI CCWGG 1 cut(s) 459
AjuI GAANNNNNNNTTGG 2 cut(s) 836, 868
AluBI AGCT 5 cut(s) 179, 360, 506, 528, 733
AluI AGCT 5 cut(s) 179, 360, 506, 528, 733
Alw26I GTCTC 1 cut(s) 110
AlwI GGATC 3 cut(s) 239, 349, 933
Ama87I CYCGRG 1 cut(s) 403
Aor51HI AGCGCT 1 cut(s) 355
AoxI GGCC 2 cut(s) 195, 466
ApoI RAATTY 2 cut(s) 471, 844
Asp700I GAANNNNTTC 1 cut(s) 292
AspLEI GCGC 2 cut(s) 356, 1076
AspS9I GGNCC 1 cut(s) 593
AsuC2I CCSGG 1 cut(s) 426
AsuHPI GGTGA 2 cut(s) 104, 751
AsuNHI GCTAGC 1 cut(s) 356
AvaI CYCGRG 1 cut(s) 403
AvaII GGWCC 1 cut(s) 593
BaeI ACNNNNGTAYC 2 cut(s) 934, 967
BalI TGGCCA 1 cut(s) 197
BbsI GAAGAC 1 cut(s) 694
BccI CCATC 4 cut(s) 278, 332, 632, 806
BciT130I CCWGG 1 cut(s) 461
BciVI GTATCC 2 cut(s) 703, 935
BcnI CCSGG 1 cut(s) 426
BcoDI GTCTC 1 cut(s) 110
BfaI CTAG 2 cut(s) 357, 620
BfmI CTRYAG 2 cut(s) 312, 546
BfoI RGCGCY 1 cut(s) 357
BfuAI ACCTGC 1 cut(s) 807
BfuI GTATCC 2 cut(s) 703, 935
BglI GCCNNNNNGGC 1 cut(s) 624
BglII AGATCT 1 cut(s) 290
Bme1390I CCNGG 2 cut(s) 426, 461
Bme18I GGWCC 1 cut(s) 593
BmeT110I CYCGRG 1 cut(s) 403
BmgBI CACGTC 1 cut(s) 104
BmgT120I GGNCC 1 cut(s) 593
BmrFI CCNGG 2 cut(s) 426, 461
BmtI GCTAGC 1 cut(s) 360
BpiI GAAGAC 1 cut(s) 694
BpmI CTGGAG 1 cut(s) 914
BpuMI CCSGG 1 cut(s) 426
BsaAI YACGTR 1 cut(s) 1012
BsaHI GRCGYC 1 cut(s) 680
BsaJI CCNNGG 3 cut(s) 147, 192, 459
BsaXI ACNNNNNCTCC 2 cut(s) 887, 917
Bsc4I CCNNNNNNNGG 3 cut(s) 89, 410, 952
Bse1I ACTGG 4 cut(s) 83, 595, 824, 897
Bse3DI GCAATG 2 cut(s) 27, 242
BseBI CCWGG 1 cut(s) 461
BseDI CCNNGG 3 cut(s) 147, 192, 459
BseGI GGATG 2 cut(s) 51, 817
BseLI CCNNNNNNNGG 3 cut(s) 89, 410, 952
BseMI GCAATG 2 cut(s) 27, 242
BseMII CTCAG 2 cut(s) 552, 743
BseNI ACTGG 4 cut(s) 83, 595, 824, 897
BshFI GGCC 2 cut(s) 197, 468
BsiHKCI CYCGRG 1 cut(s) 403
BsiSI CCGG 1 cut(s) 426
BslFI GGGAC 1 cut(s) 450
BslI CCNNNNNNNGG 3 cut(s) 89, 410, 952
BsmAI GTCTC 1 cut(s) 110
BsmBI CGTCTC 1 cut(s) 110
BsmFI GGGAC 1 cut(s) 450
BsnI GGCC 2 cut(s) 197, 468
BsoBI CYCGRG 1 cut(s) 403
Bsp143I GATC 7 cut(s) 163, 244, 290, 341, 407, 721, 925
BspACI CCGC 2 cut(s) 134, 384
BspANI GGCC 2 cut(s) 197, 468
BspCNI CTCAG 2 cut(s) 553, 742
BspMI ACCTGC 1 cut(s) 807
BspOI GCTAGC 1 cut(s) 360
BspPI GGATC 3 cut(s) 239, 349, 933
BsrBI CCGCTC 1 cut(s) 136
BsrDI GCAATG 2 cut(s) 27, 242
BsrI ACTGG 4 cut(s) 83, 595, 824, 897
BssECI CCNNGG 3 cut(s) 147, 192, 459
BssMI GATC 7 cut(s) 163, 244, 290, 341, 407, 721, 925
BssNI GRCGYC 1 cut(s) 680
BssT1I CCWWGG 2 cut(s) 147, 192
Bst2UI CCWGG 1 cut(s) 461
Bst4CI ACNGT 1 cut(s) 116
BstACI GRCGYC 1 cut(s) 680
BstAPI GCANNNNNTGC 2 cut(s) 158, 752
BstBAI YACGTR 1 cut(s) 1012
BstC8I GCNNGC 4 cut(s) 159, 358, 744, 966
BstDEI CTNAG 3 cut(s) 440, 561, 729
BstF5I GGATG 2 cut(s) 51, 817
BstH2I RGCGCY 1 cut(s) 357
BstHHI GCGC 2 cut(s) 356, 1076
BstKTI GATC 7 cut(s) 166, 247, 293, 344, 410, 724, 928
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 7 cut(s) 163, 244, 290, 341, 407, 721, 925
BstMWI GCNNNNNNNGC 5 cut(s) 158, 525, 624, 739, 752
BstNI CCWGG 1 cut(s) 461
BstNSI RCATGY 1 cut(s) 161
BstSCI CCNGG 2 cut(s) 424, 459
BstSFI CTRYAG 2 cut(s) 312, 546
BstV2I GAAGAC 1 cut(s) 694
BstX2I RGATCY 1 cut(s) 290
BstYI RGATCY 1 cut(s) 290
BsuI GTATCC 2 cut(s) 703, 935
BsuRI GGCC 2 cut(s) 197, 468
BtrI CACGTC 1 cut(s) 104
BtsCI GGATG 2 cut(s) 51, 817
BtsIMutI CAGTG 4 cut(s) 11, 558, 672, 831
BveI ACCTGC 1 cut(s) 807
Cac8I GCNNGC 4 cut(s) 159, 358, 744, 966
CfoI GCGC 2 cut(s) 356, 1076
Cfr13I GGNCC 1 cut(s) 593
CseI GACGC 1 cut(s) 688
Csp6I GTAC 5 cut(s) 265, 478, 642, 737, 997
CviAII CATG 4 cut(s) 158, 335, 485, 706
CviQI GTAC 5 cut(s) 265, 478, 642, 737, 997
DdeI CTNAG 3 cut(s) 440, 561, 729
DpnI GATC 7 cut(s) 165, 246, 292, 343, 409, 723, 927
DpnII GATC 7 cut(s) 163, 244, 290, 341, 407, 721, 925
EaeI YGGCCR 1 cut(s) 195
Eco130I CCWWGG 2 cut(s) 147, 192
Eco32I GATATC 1 cut(s) 778
Eco47I GGWCC 1 cut(s) 593
Eco47III AGCGCT 1 cut(s) 355
Eco57I CTGAAG 1 cut(s) 318
Eco88I CYCGRG 1 cut(s) 403
EcoRII CCWGG 1 cut(s) 459
EcoRV GATATC 1 cut(s) 778
EcoT14I CCWWGG 2 cut(s) 147, 192
ErhI CCWWGG 2 cut(s) 147, 192
Esp3I CGTCTC 1 cut(s) 110
FaeI CATG 4 cut(s) 161, 338, 488, 709
FalI AAGNNNNNCTT 2 cut(s) 291, 323
FaqI GGGAC 1 cut(s) 450
FatI CATG 4 cut(s) 157, 334, 484, 705
FblI GTMKAC 1 cut(s) 399
FokI GGATG 2 cut(s) 38, 824
FspBI CTAG 2 cut(s) 357, 620
GlaI GCGC 2 cut(s) 355, 1075
GsuI CTGGAG 1 cut(s) 914
HaeII RGCGCY 1 cut(s) 357
HaeIII GGCC 2 cut(s) 197, 468
HapII CCGG 1 cut(s) 426
HgaI GACGC 1 cut(s) 688
HhaI GCGC 2 cut(s) 356, 1076
Hin1I GRCGYC 1 cut(s) 680
Hin1II CATG 4 cut(s) 161, 338, 488, 709
Hin6I GCGC 2 cut(s) 354, 1074
HinP1I GCGC 2 cut(s) 354, 1074
HincII GTYRAC 1 cut(s) 588
HindII GTYRAC 1 cut(s) 588
HinfI GANTC 4 cut(s) 119, 128, 303, 857
HpaI GTTAAC 1 cut(s) 588
HpaII CCGG 1 cut(s) 426
HphI GGTGA 2 cut(s) 104, 751
Hpy166II GTNNAC 4 cut(s) 267, 400, 588, 596
Hpy188I TCNGA 5 cut(s) 186, 298, 660, 787, 930
Hpy188III TCNNGA 1 cut(s) 125
Hpy8I GTNNAC 4 cut(s) 267, 400, 588, 596
HpyAV CCTTC 6 cut(s) 293, 462, 509, 617, 680, 686
HpyCH4III ACNGT 1 cut(s) 116
HpyCH4IV ACGT 2 cut(s) 103, 1011
HpyCH4V TGCA 4 cut(s) 32, 261, 498, 755
HpyF10VI GCNNNNNNNGC 5 cut(s) 158, 525, 624, 739, 752
HpyF3I CTNAG 3 cut(s) 440, 561, 729
HpySE526I ACGT 2 cut(s) 103, 1011
Hsp92I GRCGYC 1 cut(s) 680
Hsp92II CATG 4 cut(s) 161, 338, 488, 709
HspAI GCGC 2 cut(s) 354, 1074
KspAI GTTAAC 1 cut(s) 588
Kzo9I GATC 7 cut(s) 163, 244, 290, 341, 407, 721, 925
LmnI GCTCC 1 cut(s) 141
MaeI CTAG 2 cut(s) 357, 620
MaeII ACGT 2 cut(s) 103, 1011
MaeIII GTNAC 5 cut(s) 116, 386, 413, 757, 830
MalI GATC 7 cut(s) 165, 246, 292, 343, 409, 723, 927
MbiI CCGCTC 1 cut(s) 136
MboI GATC 7 cut(s) 163, 244, 290, 341, 407, 721, 925
MboII GAAGA 5 cut(s) 60, 285, 300, 447, 694
MflI RGATCY 1 cut(s) 290
MlsI TGGCCA 1 cut(s) 197
MluCI AATT 4 cut(s) 429, 471, 844, 881
MluNI TGGCCA 1 cut(s) 197
MlyI GAGTC 2 cut(s) 113, 312
MmeI TCCRAC 3 cut(s) 630, 765, 1000
MnlI CCTC 8 cut(s) 16, 35, 66, 70, 91, 492, 689, 766
Mox20I TGGCCA 1 cut(s) 197
MroXI GAANNNNTTC 1 cut(s) 292
MscI TGGCCA 1 cut(s) 197
MseI TTAA 2 cut(s) 534, 587
MslI CAYNNNNRTG 2 cut(s) 393, 1014
Msp20I TGGCCA 1 cut(s) 197
MspA1I CMGCKG 1 cut(s) 733
MspI CCGG 1 cut(s) 426
MspR9I CCNGG 2 cut(s) 426, 461
MvaI CCWGG 1 cut(s) 461
MwoI GCNNNNNNNGC 5 cut(s) 158, 525, 624, 739, 752
NciI CCSGG 1 cut(s) 426
NdeII GATC 7 cut(s) 163, 244, 290, 341, 407, 721, 925
NheI GCTAGC 1 cut(s) 356
NlaIII CATG 4 cut(s) 161, 338, 488, 709
NmuCI GTSAC 3 cut(s) 116, 386, 757
NspI RCATGY 1 cut(s) 161
PaeI GCATGC 1 cut(s) 161
PdmI GAANNNNTTC 1 cut(s) 292
PfeI GAWTC 2 cut(s) 128, 857
PflMI CCANNNNNTGG 1 cut(s) 952
PleI GAGTC 2 cut(s) 113, 311
PpsI GAGTC 2 cut(s) 113, 311
Ppu21I YACGTR 1 cut(s) 1012
Psp6I CCWGG 1 cut(s) 459
PspGI CCWGG 1 cut(s) 459
PspPI GGNCC 1 cut(s) 593
PsrI GAACNNNNNNTAC 2 cut(s) 709, 741
PsuI RGATCY 1 cut(s) 290
PvuII CAGCTG 1 cut(s) 733
RsaI GTAC 5 cut(s) 266, 479, 643, 738, 998
RsaNI GTAC 5 cut(s) 265, 478, 642, 737, 997
RseI CAYNNNNRTG 2 cut(s) 393, 1014
SaqAI TTAA 2 cut(s) 534, 587
Sau3AI GATC 7 cut(s) 163, 244, 290, 341, 407, 721, 925
Sau96I GGNCC 1 cut(s) 593
SchI GAGTC 2 cut(s) 113, 312
ScrFI CCNGG 2 cut(s) 426, 461
SfcI CTRYAG 2 cut(s) 312, 546
SinI GGWCC 1 cut(s) 593
SmiMI CAYNNNNRTG 2 cut(s) 393, 1014
SphI GCATGC 1 cut(s) 161
Sse9I AATT 4 cut(s) 429, 471, 844, 881
SsiI CCGC 2 cut(s) 134, 384
SspMI CTAG 2 cut(s) 357, 620
StyD4I CCNGG 2 cut(s) 424, 459
StyI CCWWGG 2 cut(s) 147, 192
TaaI ACNGT 1 cut(s) 116
TaiI ACGT 2 cut(s) 106, 1014
TaqI TCGA 3 cut(s) 96, 330, 860
TasI AATT 4 cut(s) 429, 471, 844, 881
TatI WGTACW 1 cut(s) 264
TfiI GAWTC 2 cut(s) 128, 857
Tru1I TTAA 2 cut(s) 534, 587
Tru9I TTAA 2 cut(s) 534, 587
TscAI CASTG 4 cut(s) 18, 565, 672, 831
TseFI GTSAC 3 cut(s) 116, 386, 757
Tsp45I GTSAC 3 cut(s) 116, 386, 757
TspDTI ATGAA 2 cut(s) 528, 694
TspGWI ACGGA 1 cut(s) 891
TspRI CASTG 4 cut(s) 18, 565, 672, 831
Van91I CCANNNNNTGG 1 cut(s) 952
VpaK11BI GGWCC 1 cut(s) 593
XapI RAATTY 2 cut(s) 471, 844
XceI RCATGY 1 cut(s) 161
XmiI GTMKAC 1 cut(s) 399
XmnI GAANNNNTTC 1 cut(s) 292
XspI CTAG 2 cut(s) 357, 620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.