Rh1BG251800

Aspartic proteinase CDR1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0013789
Physical Location & Seq
Forward (+)
38055126 .. 38056049
924 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG251800.1

Sequence Viewer

Length: 924 bp
ATGATCCTTCAAACTCGATCACCAAGCTTTGTAGAAGTAAGGTGTAGCTCTCTAGACTGCAACATAACCGCAGATACGCAATGCCCCGATCCTAATGGTATATGCAAGTACACGATTGCGTATGGAGATGGAAGATCTTCTGAAGGAGTCCTTGCTACAGAAACAATCACGCTCGAACATGATGGATCAAGTGGAAGCGCTAGCTTACCAAATATGATTTTCGGGTGCGGTAACTCTAATATAGACCCGAGATCAGGTTACAATCCACCCGGAATTGTGGGACTAAGCAGAGAACCTTCTTCCCTGGTAGGCCAAATTTCGTACCCTCATGTTTCGTATTGCATATCAGCTAATAATGAAGGCAACCATAGCTCTGTTAAGTTCGGCTCTGTAGCAGTCATCACTGAGAATACTACTCAAACCCCATTGTTAACTGGTCCACTTGATTTTTACTATGTAAGCCTAGAAGGCATTAGTGTTGATGGTACAATGTTGGACATTCCGAAATCAGTGTTCAATATGACGCCAGAAGGAGAAGGAGGGCTCTTCATGGATACAGGAACAGATCATACTCAGCTGGTACTGCCAGCATTTTATGCAGTCACCAATAAAATAGAGGATATCTTGTCGGATTTCAAATCCTTACCAGATGTGGATGGCAGGTTTCCAGTGTGTTACAACGATACGAATTTTAGATTAGATTCGACACCAGAAATAGTATTCCAATTTACAGGACTGGAGTTTCCGTTGAGTGCCAATAACACTTGGGATCAGAACTCTCTGGGATACTATTGTTTGGCTATATTGCCAGCATTTAGGGGTCATTCTGTTCTTGGAATGTACCAGCAAAGGAACGTAAATGTTGGATATGACTTCAATAACAACATTGTATCTTTGAAGTATAGCGACAATAACTGCGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

307

Amino Acids

33.34

Weight (kDa)

4.4

Isoelectric Point (pI)

33.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 5 - 130 1.3e-22 Xylanase inhibitor N-terminal
TAXi_C PF14541 151 - 297 7.1e-24 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013789)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42980
malus_domestica MD01G1081400.v1.1 MD01G1081500.v1.1 MD01G1081600.v1.1 MD01G1081900.v1.1
prunus_persica Prupe.2G189100_v2.0.a1
pyrus_communis pycom07g14880
rosa_chinensis RchiOBHm_Chr1g0359581
rosa_laevigata RLG00000027860
rosa_multiflora Rmu_sc0002556.1_g000022
rosa_roxburghii Rroxscaffold_4G00296910
rosa_samantha Rh1AG285600 Rh1BG251700 Rh1BG251800 Rh1DG280900 Rh1DG281000
rosa_wichuraiana Rw1G025390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 651
AciI CCGC 2 cut(s) 69, 228
AclWI GGATC 3 cut(s) 83, 193, 777
AcsI RAATTY 2 cut(s) 315, 688
AcuI CTGAAG 1 cut(s) 162
AcyI GRCGYC 1 cut(s) 524
AfaI GTAC 5 cut(s) 110, 323, 487, 582, 842
AfeI AGCGCT 1 cut(s) 199
AfiI CCNNNNNNNGG 1 cut(s) 254
AgsI TTSAA 5 cut(s) 11, 517, 637, 877, 898
AjnI CCWGG 1 cut(s) 303
AluBI AGCT 6 cut(s) 27, 48, 204, 350, 372, 577
AluI AGCT 6 cut(s) 27, 48, 204, 350, 372, 577
AlwI GGATC 3 cut(s) 83, 193, 777
Ama87I CYCGRG 1 cut(s) 247
Aor51HI AGCGCT 1 cut(s) 199
AoxI GGCC 1 cut(s) 310
ApoI RAATTY 2 cut(s) 315, 688
Asp700I GAANNNNTTC 1 cut(s) 136
AspLEI GCGC 2 cut(s) 200, 920
AspS9I GGNCC 1 cut(s) 437
AsuC2I CCSGG 1 cut(s) 270
AsuHPI GGTGA 2 cut(s) 12, 595
AsuNHI GCTAGC 1 cut(s) 200
AvaI CYCGRG 1 cut(s) 247
AvaII GGWCC 1 cut(s) 437
BaeI ACNNNNGTAYC 2 cut(s) 778, 811
BanII GRGCYC 1 cut(s) 546
BccI CCATC 4 cut(s) 122, 176, 476, 650
BciT130I CCWGG 1 cut(s) 305
BciVI GTATCC 2 cut(s) 547, 779
BcnI CCSGG 1 cut(s) 270
BfaI CTAG 3 cut(s) 53, 201, 464
BfmI CTRYAG 2 cut(s) 156, 390
BfoI RGCGCY 1 cut(s) 201
BfuAI ACCTGC 1 cut(s) 651
BfuI GTATCC 2 cut(s) 547, 779
BglI GCCNNNNNGGC 1 cut(s) 468
BglII AGATCT 1 cut(s) 134
Bme1390I CCNGG 2 cut(s) 270, 305
Bme18I GGWCC 1 cut(s) 437
BmeT110I CYCGRG 1 cut(s) 247
BmgT120I GGNCC 1 cut(s) 437
BmrFI CCNGG 2 cut(s) 270, 305
BmtI GCTAGC 1 cut(s) 204
BpmI CTGGAG 1 cut(s) 758
BpuMI CCSGG 1 cut(s) 270
BsaHI GRCGYC 1 cut(s) 524
BsaJI CCNNGG 1 cut(s) 303
BsaXI ACNNNNNCTCC 2 cut(s) 731, 761
Bsc4I CCNNNNNNNGG 1 cut(s) 254
Bse1I ACTGG 3 cut(s) 439, 668, 741
Bse3DI GCAATG 1 cut(s) 86
BseBI CCWGG 1 cut(s) 305
BseDI CCNNGG 1 cut(s) 303
BseGI GGATG 1 cut(s) 661
BseLI CCNNNNNNNGG 1 cut(s) 254
BseMI GCAATG 1 cut(s) 86
BseMII CTCAG 2 cut(s) 396, 587
BseNI ACTGG 3 cut(s) 439, 668, 741
BshFI GGCC 1 cut(s) 312
BsiHKCI CYCGRG 1 cut(s) 247
BsiSI CCGG 1 cut(s) 270
BslFI GGGAC 1 cut(s) 294
BslI CCNNNNNNNGG 1 cut(s) 254
BsmFI GGGAC 1 cut(s) 294
BsnI GGCC 1 cut(s) 312
BsoBI CYCGRG 1 cut(s) 247
Bsp1286I GDGCHC 1 cut(s) 546
Bsp143I GATC 8 cut(s) 3, 17, 88, 134, 185, 251, 565, 769
BspACI CCGC 2 cut(s) 69, 228
BspANI GGCC 1 cut(s) 312
BspCNI CTCAG 2 cut(s) 397, 586
BspMI ACCTGC 1 cut(s) 651
BspOI GCTAGC 1 cut(s) 204
BspPI GGATC 3 cut(s) 83, 193, 777
BspQI GCTCTTC 1 cut(s) 551
BsrDI GCAATG 1 cut(s) 86
BsrI ACTGG 3 cut(s) 439, 668, 741
BssECI CCNNGG 1 cut(s) 303
BssMI GATC 8 cut(s) 3, 17, 88, 134, 185, 251, 565, 769
BssNI GRCGYC 1 cut(s) 524
Bst2UI CCWGG 1 cut(s) 305
Bst6I CTCTTC 1 cut(s) 551
BstACI GRCGYC 1 cut(s) 524
BstAPI GCANNNNNTGC 1 cut(s) 596
BstC8I GCNNGC 3 cut(s) 202, 588, 810
BstDEI CTNAG 3 cut(s) 284, 405, 573
BstF5I GGATG 1 cut(s) 661
BstH2I RGCGCY 1 cut(s) 201
BstHHI GCGC 2 cut(s) 200, 920
BstKTI GATC 8 cut(s) 6, 20, 91, 137, 188, 254, 568, 772
BstMBI GATC 8 cut(s) 3, 17, 88, 134, 185, 251, 565, 769
BstMWI GCNNNNNNNGC 4 cut(s) 369, 468, 583, 596
BstNI CCWGG 1 cut(s) 305
BstSCI CCNGG 2 cut(s) 268, 303
BstSFI CTRYAG 2 cut(s) 156, 390
BstX2I RGATCY 1 cut(s) 134
BstYI RGATCY 1 cut(s) 134
BsuI GTATCC 2 cut(s) 547, 779
BsuRI GGCC 1 cut(s) 312
BtsCI GGATG 1 cut(s) 661
BtsIMutI CAGTG 3 cut(s) 402, 516, 675
BveI ACCTGC 1 cut(s) 651
Cac8I GCNNGC 3 cut(s) 202, 588, 810
CfoI GCGC 2 cut(s) 200, 920
Cfr13I GGNCC 1 cut(s) 437
CseI GACGC 1 cut(s) 532
Csp6I GTAC 5 cut(s) 109, 322, 486, 581, 841
CviAII CATG 3 cut(s) 179, 329, 550
CviQI GTAC 5 cut(s) 109, 322, 486, 581, 841
DdeI CTNAG 3 cut(s) 284, 405, 573
DpnI GATC 8 cut(s) 5, 19, 90, 136, 187, 253, 567, 771
DpnII GATC 8 cut(s) 3, 17, 88, 134, 185, 251, 565, 769
Eam1104I CTCTTC 1 cut(s) 551
EarI CTCTTC 1 cut(s) 551
Eco24I GRGCYC 1 cut(s) 546
Eco32I GATATC 1 cut(s) 622
Eco47I GGWCC 1 cut(s) 437
Eco47III AGCGCT 1 cut(s) 199
Eco57I CTGAAG 1 cut(s) 162
Eco88I CYCGRG 1 cut(s) 247
EcoRII CCWGG 1 cut(s) 303
EcoRV GATATC 1 cut(s) 622
EcoT38I GRGCYC 1 cut(s) 546
FaeI CATG 3 cut(s) 182, 332, 553
FalI AAGNNNNNCTT 2 cut(s) 135, 167
FaqI GGGAC 1 cut(s) 294
FatI CATG 3 cut(s) 178, 328, 549
FokI GGATG 1 cut(s) 668
FriOI GRGCYC 1 cut(s) 546
FspBI CTAG 3 cut(s) 53, 201, 464
GlaI GCGC 2 cut(s) 199, 919
GsuI CTGGAG 1 cut(s) 758
HaeII RGCGCY 1 cut(s) 201
HaeIII GGCC 1 cut(s) 312
HapII CCGG 1 cut(s) 270
HgaI GACGC 1 cut(s) 532
HhaI GCGC 2 cut(s) 200, 920
Hin1I GRCGYC 1 cut(s) 524
Hin1II CATG 3 cut(s) 182, 332, 553
Hin6I GCGC 2 cut(s) 198, 918
HinP1I GCGC 2 cut(s) 198, 918
HincII GTYRAC 1 cut(s) 432
HindII GTYRAC 1 cut(s) 432
HindIII AAGCTT 1 cut(s) 25
HinfI GANTC 2 cut(s) 147, 701
HpaI GTTAAC 1 cut(s) 432
HpaII CCGG 1 cut(s) 270
HphI GGTGA 2 cut(s) 12, 595
Hpy166II GTNNAC 3 cut(s) 111, 432, 440
Hpy188I TCNGA 4 cut(s) 142, 504, 631, 774
Hpy188III TCNNGA 1 cut(s) 53
Hpy8I GTNNAC 3 cut(s) 111, 432, 440
HpyAV CCTTC 7 cut(s) 17, 137, 306, 353, 461, 524, 530
HpyCH4IV ACGT 1 cut(s) 855
HpyCH4V TGCA 4 cut(s) 60, 105, 342, 599
HpyF10VI GCNNNNNNNGC 4 cut(s) 369, 468, 583, 596
HpyF3I CTNAG 3 cut(s) 284, 405, 573
HpySE526I ACGT 1 cut(s) 855
Hsp92I GRCGYC 1 cut(s) 524
Hsp92II CATG 3 cut(s) 182, 332, 553
HspAI GCGC 2 cut(s) 198, 918
KspAI GTTAAC 1 cut(s) 432
Kzo9I GATC 8 cut(s) 3, 17, 88, 134, 185, 251, 565, 769
LguI GCTCTTC 1 cut(s) 551
MaeI CTAG 3 cut(s) 53, 201, 464
MaeII ACGT 1 cut(s) 855
MaeIII GTNAC 4 cut(s) 230, 257, 601, 674
MalI GATC 8 cut(s) 5, 19, 90, 136, 187, 253, 567, 771
MboI GATC 8 cut(s) 3, 17, 88, 134, 185, 251, 565, 769
MboII GAAGA 4 cut(s) 129, 144, 291, 538
MflI RGATCY 1 cut(s) 134
MhlI GDGCHC 1 cut(s) 546
MluCI AATT 4 cut(s) 273, 315, 688, 725
MlyI GAGTC 1 cut(s) 156
MmeI TCCRAC 3 cut(s) 474, 609, 844
MnlI CCTC 3 cut(s) 336, 533, 610
MroXI GAANNNNTTC 1 cut(s) 136
MseI TTAA 2 cut(s) 378, 431
MspA1I CMGCKG 1 cut(s) 577
MspI CCGG 1 cut(s) 270
MspR9I CCNGG 2 cut(s) 270, 305
MvaI CCWGG 1 cut(s) 305
MwoI GCNNNNNNNGC 4 cut(s) 369, 468, 583, 596
NciI CCSGG 1 cut(s) 270
NdeII GATC 8 cut(s) 3, 17, 88, 134, 185, 251, 565, 769
NheI GCTAGC 1 cut(s) 200
NlaIII CATG 3 cut(s) 182, 332, 553
NmuCI GTSAC 1 cut(s) 601
PciSI GCTCTTC 1 cut(s) 551
PdmI GAANNNNTTC 1 cut(s) 136
PfeI GAWTC 1 cut(s) 701
PleI GAGTC 1 cut(s) 155
PpsI GAGTC 1 cut(s) 155
Psp6I CCWGG 1 cut(s) 303
PspGI CCWGG 1 cut(s) 303
PspPI GGNCC 1 cut(s) 437
PsrI GAACNNNNNNTAC 2 cut(s) 553, 585
PsuI RGATCY 1 cut(s) 134
PvuII CAGCTG 1 cut(s) 577
RsaI GTAC 5 cut(s) 110, 323, 487, 582, 842
RsaNI GTAC 5 cut(s) 109, 322, 486, 581, 841
SapI GCTCTTC 1 cut(s) 551
SaqAI TTAA 2 cut(s) 378, 431
Sau3AI GATC 8 cut(s) 3, 17, 88, 134, 185, 251, 565, 769
Sau96I GGNCC 1 cut(s) 437
SchI GAGTC 1 cut(s) 156
ScrFI CCNGG 2 cut(s) 270, 305
SduI GDGCHC 1 cut(s) 546
SfcI CTRYAG 2 cut(s) 156, 390
SinI GGWCC 1 cut(s) 437
Sse9I AATT 4 cut(s) 273, 315, 688, 725
SsiI CCGC 2 cut(s) 69, 228
SspMI CTAG 3 cut(s) 53, 201, 464
StyD4I CCNGG 2 cut(s) 268, 303
TaiI ACGT 1 cut(s) 858
TaqI TCGA 3 cut(s) 16, 174, 704
TasI AATT 4 cut(s) 273, 315, 688, 725
TatI WGTACW 1 cut(s) 108
TfiI GAWTC 1 cut(s) 701
Tru1I TTAA 2 cut(s) 378, 431
Tru9I TTAA 2 cut(s) 378, 431
TscAI CASTG 3 cut(s) 409, 516, 675
TseFI GTSAC 1 cut(s) 601
Tsp45I GTSAC 1 cut(s) 601
TspDTI ATGAA 2 cut(s) 372, 538
TspGWI ACGGA 1 cut(s) 735
TspRI CASTG 3 cut(s) 409, 516, 675
VpaK11BI GGWCC 1 cut(s) 437
XapI RAATTY 2 cut(s) 315, 688
XbaI TCTAGA 1 cut(s) 52
XmnI GAANNNNTTC 1 cut(s) 136
XspI CTAG 3 cut(s) 53, 201, 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.