RLG00000027860

Aspartic proteinase CDR1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0013789
Physical Location & Seq
Reverse (-)
16192182 .. 16192798
617 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027860

Sequence Viewer

Length: 534 bp
ATGATTTTCAGGTGCGGTCACTCTAATGTAGACCCGAGATCAGGTTACAATATTCCACCAGGAATTGTGGGACTAAGCAGAGGACCTTCTTCCCTGGTAGGCCAAATTTCGTACCCTCATGTTTCGTATTGCATGTCAGCTAATAATGAAGGCAACCATAGCTCTGTTAAGTTCGGCTCTGTAGCAGTCATCACTGAGAATACTACTCAAACCCCATTGTTAACTGGTCCACTTGGTTTTTACTATGTAAGCCTAGAAGGCATTAGTGTTGATGGTACAATGTTGGACATTCCGAAATCAGTGTTCAATATGATGCCAGAAGGAGAAGGAGGGGTCTTCATGGATACAGGAACAGATCATACTCAGCTGGTAGTCTGGTTCCCAGTGTGTTACAACGATACGAATTTTAGATTGGATTCGATACCAGAAATAGTATTCCAGTTTACAGGACTGGAGTTTCCGTTGAGTGCCAATAACACTTGGGATCAGAACTCTCTGGGATACTATTGTTTGGCTATATATTGCAGCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

178

Amino Acids

19.36

Weight (kDa)

4.55

Isoelectric Point (pI)

23.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_C PF14541 81 - 124 5.1e-08 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013789)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42980
malus_domestica MD01G1081400.v1.1 MD01G1081500.v1.1 MD01G1081600.v1.1 MD01G1081900.v1.1
prunus_persica Prupe.2G189100_v2.0.a1
pyrus_communis pycom07g14880
rosa_chinensis RchiOBHm_Chr1g0359581
rosa_laevigata RLG00000027860
rosa_multiflora Rmu_sc0002556.1_g000022
rosa_roxburghii Rroxscaffold_4G00296910
rosa_samantha Rh1AG285600 Rh1BG251700 Rh1BG251800 Rh1DG280900 Rh1DG281000
rosa_wichuraiana Rw1G025390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 30
AciI CCGC 1 cut(s) 15
AclWI GGATC 1 cut(s) 492
AcsI RAATTY 2 cut(s) 105, 403
AfaI GTAC 2 cut(s) 113, 277
AfiI CCNNNNNNNGG 1 cut(s) 41
AgsI TTSAA 1 cut(s) 307
AjnI CCWGG 2 cut(s) 58, 93
AjuI GAANNNNNNNTTGG 2 cut(s) 395, 427
AluBI AGCT 3 cut(s) 140, 162, 367
AluI AGCT 3 cut(s) 140, 162, 367
AlwI GGATC 1 cut(s) 492
Ama87I CYCGRG 1 cut(s) 34
AoxI GGCC 1 cut(s) 100
ApeKI GCWGC 1 cut(s) 525
ApoI RAATTY 2 cut(s) 105, 403
AspS9I GGNCC 2 cut(s) 83, 227
AvaI CYCGRG 1 cut(s) 34
AvaII GGWCC 2 cut(s) 83, 227
BaeI ACNNNNGTAYC 2 cut(s) 493, 526
BbsI GAAGAC 1 cut(s) 328
BccI CCATC 1 cut(s) 266
BciT130I CCWGG 2 cut(s) 60, 95
BciVI GTATCC 2 cut(s) 337, 494
BfaI CTAG 1 cut(s) 254
BfmI CTRYAG 1 cut(s) 180
BfuI GTATCC 2 cut(s) 337, 494
BglI GCCNNNNNGGC 1 cut(s) 258
BisI GCNGC 1 cut(s) 526
BlsI GCNGC 1 cut(s) 527
Bme1390I CCNGG 2 cut(s) 60, 95
Bme18I GGWCC 2 cut(s) 83, 227
BmeT110I CYCGRG 1 cut(s) 34
BmgT120I GGNCC 2 cut(s) 83, 227
BmiI GGNNCC 1 cut(s) 380
BmrFI CCNGG 2 cut(s) 60, 95
BmrI ACTGGG 1 cut(s) 377
BmsI GCATC 1 cut(s) 303
BmuI ACTGGG 1 cut(s) 377
BpiI GAAGAC 1 cut(s) 328
BpmI CTGGAG 1 cut(s) 473
BsaJI CCNNGG 1 cut(s) 93
BsaXI ACNNNNNCTCC 2 cut(s) 446, 476
Bsc4I CCNNNNNNNGG 1 cut(s) 41
Bse1I ACTGG 4 cut(s) 229, 383, 439, 456
BseBI CCWGG 2 cut(s) 60, 95
BseDI CCNNGG 1 cut(s) 93
BseLI CCNNNNNNNGG 1 cut(s) 41
BseMII CTCAG 2 cut(s) 186, 377
BseNI ACTGG 4 cut(s) 229, 383, 439, 456
BshFI GGCC 1 cut(s) 102
BsiHKCI CYCGRG 1 cut(s) 34
BslFI GGGAC 1 cut(s) 84
BslI CCNNNNNNNGG 1 cut(s) 41
BsmFI GGGAC 1 cut(s) 84
BsnI GGCC 1 cut(s) 102
BsoBI CYCGRG 1 cut(s) 34
Bsp143I GATC 3 cut(s) 38, 355, 484
BspACI CCGC 1 cut(s) 15
BspANI GGCC 1 cut(s) 102
BspCNI CTCAG 2 cut(s) 187, 376
BspLI GGNNCC 1 cut(s) 380
BspPI GGATC 1 cut(s) 492
BsrI ACTGG 4 cut(s) 229, 383, 439, 456
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 3 cut(s) 38, 355, 484
Bst2UI CCWGG 2 cut(s) 60, 95
BstDEI CTNAG 3 cut(s) 74, 195, 363
BstKTI GATC 3 cut(s) 41, 358, 487
BstMBI GATC 3 cut(s) 38, 355, 484
BstMWI GCNNNNNNNGC 2 cut(s) 159, 258
BstNI CCWGG 2 cut(s) 60, 95
BstNSI RCATGY 1 cut(s) 136
BstSCI CCNGG 2 cut(s) 58, 93
BstSFI CTRYAG 1 cut(s) 180
BstV2I GAAGAC 1 cut(s) 328
BsuI GTATCC 2 cut(s) 337, 494
BsuRI GGCC 1 cut(s) 102
BtsIMutI CAGTG 3 cut(s) 192, 306, 390
Cfr13I GGNCC 2 cut(s) 83, 227
Csp6I GTAC 2 cut(s) 112, 276
CviAII CATG 3 cut(s) 119, 133, 340
CviJI RGCY 7 cut(s) 102, 140, 162, 177, 252, 367, 515
CviKI_1 RGCY 7 cut(s) 102, 140, 162, 177, 252, 367, 515
CviQI GTAC 2 cut(s) 112, 276
DdeI CTNAG 3 cut(s) 74, 195, 363
DpnI GATC 3 cut(s) 40, 357, 486
DpnII GATC 3 cut(s) 38, 355, 484
Eco47I GGWCC 2 cut(s) 83, 227
Eco88I CYCGRG 1 cut(s) 34
EcoO109I RGGNCCY 1 cut(s) 83
EcoRII CCWGG 2 cut(s) 58, 93
FaeI CATG 3 cut(s) 122, 136, 343
FaiI YATR 9 cut(s) 120, 134, 159, 246, 311, 341, 360, 518, 520
FaqI GGGAC 1 cut(s) 84
FatI CATG 3 cut(s) 118, 132, 339
FblI GTMKAC 1 cut(s) 30
Fnu4HI GCNGC 1 cut(s) 526
Fsp4HI GCNGC 1 cut(s) 526
FspBI CTAG 1 cut(s) 254
GluI GCNGC 1 cut(s) 526
GsuI CTGGAG 1 cut(s) 473
HaeIII GGCC 1 cut(s) 102
Hin1II CATG 3 cut(s) 122, 136, 343
HincII GTYRAC 1 cut(s) 222
HindII GTYRAC 1 cut(s) 222
HinfI GANTC 1 cut(s) 416
HpaI GTTAAC 1 cut(s) 222
Hpy166II GTNNAC 4 cut(s) 31, 222, 230, 444
Hpy188I TCNGA 2 cut(s) 294, 489
Hpy8I GTNNAC 4 cut(s) 31, 222, 230, 444
HpyAV CCTTC 5 cut(s) 96, 143, 251, 314, 320
HpyCH4V TGCA 2 cut(s) 132, 525
HpyF10VI GCNNNNNNNGC 2 cut(s) 159, 258
HpyF3I CTNAG 3 cut(s) 74, 195, 363
Hsp92II CATG 3 cut(s) 122, 136, 343
KspAI GTTAAC 1 cut(s) 222
Kzo9I GATC 3 cut(s) 38, 355, 484
LweI GCATC 1 cut(s) 303
MaeI CTAG 1 cut(s) 254
MaeIII GTNAC 3 cut(s) 17, 44, 389
MalI GATC 3 cut(s) 40, 357, 486
MboI GATC 3 cut(s) 38, 355, 484
MboII GAAGA 2 cut(s) 81, 328
MluCI AATT 3 cut(s) 63, 105, 403
MmeI TCCRAC 1 cut(s) 264
MnlI CCTC 3 cut(s) 74, 126, 323
MseI TTAA 2 cut(s) 168, 221
MslI CAYNNNNRTG 1 cut(s) 24
MspA1I CMGCKG 1 cut(s) 367
MspR9I CCNGG 2 cut(s) 60, 95
MvaI CCWGG 2 cut(s) 60, 95
MwoI GCNNNNNNNGC 2 cut(s) 159, 258
NdeII GATC 3 cut(s) 38, 355, 484
NlaIII CATG 3 cut(s) 122, 136, 343
NlaIV GGNNCC 1 cut(s) 380
NmuCI GTSAC 1 cut(s) 17
NspI RCATGY 1 cut(s) 136
PfeI GAWTC 1 cut(s) 416
PkrI GCNGC 1 cut(s) 527
PpuMI RGGWCCY 1 cut(s) 83
Psp5II RGGWCCY 1 cut(s) 83
Psp6I CCWGG 2 cut(s) 58, 93
PspGI CCWGG 2 cut(s) 58, 93
PspN4I GGNNCC 1 cut(s) 380
PspPI GGNCC 2 cut(s) 83, 227
PspPPI RGGWCCY 1 cut(s) 83
PsrI GAACNNNNNNTAC 2 cut(s) 343, 375
PvuII CAGCTG 1 cut(s) 367
RsaI GTAC 2 cut(s) 113, 277
RsaNI GTAC 2 cut(s) 112, 276
RseI CAYNNNNRTG 1 cut(s) 24
SaqAI TTAA 2 cut(s) 168, 221
SatI GCNGC 1 cut(s) 526
Sau3AI GATC 3 cut(s) 38, 355, 484
Sau96I GGNCC 2 cut(s) 83, 227
ScrFI CCNGG 2 cut(s) 60, 95
SetI ASST 6 cut(s) 14, 46, 88, 142, 164, 369
SfaNI GCATC 1 cut(s) 303
SfcI CTRYAG 1 cut(s) 180
SinI GGWCC 2 cut(s) 83, 227
SmiMI CAYNNNNRTG 1 cut(s) 24
Sse9I AATT 3 cut(s) 63, 105, 403
SsiI CCGC 1 cut(s) 15
SspI AATATT 1 cut(s) 52
SspMI CTAG 1 cut(s) 254
StyD4I CCNGG 2 cut(s) 58, 93
TaqI TCGA 1 cut(s) 419
TasI AATT 3 cut(s) 63, 105, 403
TfiI GAWTC 1 cut(s) 416
Tru1I TTAA 2 cut(s) 168, 221
Tru9I TTAA 2 cut(s) 168, 221
TscAI CASTG 3 cut(s) 199, 306, 390
TseFI GTSAC 1 cut(s) 17
TseI GCWGC 1 cut(s) 525
Tsp45I GTSAC 1 cut(s) 17
TspDTI ATGAA 2 cut(s) 162, 328
TspGWI ACGGA 1 cut(s) 450
TspRI CASTG 3 cut(s) 199, 306, 390
VpaK11BI GGWCC 2 cut(s) 83, 227
XapI RAATTY 2 cut(s) 105, 403
XceI RCATGY 1 cut(s) 136
XmiI GTMKAC 1 cut(s) 30
XspI CTAG 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.