Rh1DG280900

Aspartic proteinase CDR1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0013789
Physical Location & Seq
Forward (+)
50218828 .. 50219208
381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG280900.1

Sequence Viewer

Length: 381 bp
ATGCCCTCACCACTGATATTCTCCCTCATTGCACTCATTTTAGTCATCAACATCCCTCCCTCTATTTCTTCTCCTAAAACACCAGTCAAGGGTTTCGAGGCACGTCTCATTCACCGTGACTCTCCTGAATCTCCGCTCCACAACCCCAAGGCAACGCATGCTGATCTTATCAAATCAGCTCGTCAGAGAACCTTGGCCAGACAAAACTACTTCAAAAGGCTAATGTCAAGTAAACCATGGCAGAAATTAATAAGTGCCCCCATTGATTTGGAACTAGGAGACTACATCATGAGGTTCCAAATTGGCACCCCAAAAGTGGATACCTATGCATTCTTCGACACGGCCAGCCGTTTGATTTGGTTGCAGTGCATGCCTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

126

Amino Acids

14.32

Weight (kDa)

9.8

Isoelectric Point (pI)

61.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 95 - 126 9.4e-08 Xylanase inhibitor N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013789)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42980
malus_domestica MD01G1081400.v1.1 MD01G1081500.v1.1 MD01G1081600.v1.1 MD01G1081900.v1.1
prunus_persica Prupe.2G189100_v2.0.a1
pyrus_communis pycom07g14880
rosa_chinensis RchiOBHm_Chr1g0359581
rosa_laevigata RLG00000027860
rosa_multiflora Rmu_sc0002556.1_g000022
rosa_roxburghii Rroxscaffold_4G00296910
rosa_samantha Rh1AG285600 Rh1BG251700 Rh1BG251800 Rh1DG280900 Rh1DG281000
rosa_wichuraiana Rw1G025390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 305
AccBSI CCGCTC 1 cut(s) 136
AciI CCGC 1 cut(s) 134
AcoI YGGCCR 2 cut(s) 195, 342
AfiI CCNNNNNNNGG 2 cut(s) 89, 316
AgsI TTSAA 1 cut(s) 214
AjiI CACGTC 1 cut(s) 104
AluBI AGCT 1 cut(s) 179
AluI AGCT 1 cut(s) 179
Alw26I GTCTC 2 cut(s) 110, 273
AoxI GGCC 2 cut(s) 195, 342
AseI ATTAAT 1 cut(s) 248
AsuHPI GGTGA 1 cut(s) 104
BaeGI GKGCMC 1 cut(s) 259
BalI TGGCCA 1 cut(s) 197
BanI GGYRCC 1 cut(s) 305
BceAI ACGGC 2 cut(s) 333, 357
BciVI GTATCC 1 cut(s) 313
BcoDI GTCTC 2 cut(s) 110, 273
BfaI CTAG 1 cut(s) 275
BfuI GTATCC 1 cut(s) 313
BmgBI CACGTC 1 cut(s) 104
BmiI GGNNCC 2 cut(s) 296, 307
BsaJI CCNNGG 3 cut(s) 147, 192, 236
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 316
Bse1I ACTGG 1 cut(s) 83
Bse3DI GCAATG 1 cut(s) 27
BseDI CCNNGG 3 cut(s) 147, 192, 236
BseGI GGATG 1 cut(s) 51
BseLI CCNNNNNNNGG 2 cut(s) 89, 316
BseMI GCAATG 1 cut(s) 27
BseNI ACTGG 1 cut(s) 83
BseSI GKGCMC 1 cut(s) 259
BshFI GGCC 2 cut(s) 197, 344
BshNI GGYRCC 1 cut(s) 305
BslI CCNNNNNNNGG 2 cut(s) 89, 316
BsmAI GTCTC 2 cut(s) 110, 273
BsmBI CGTCTC 1 cut(s) 110
BsmI GAATGC 1 cut(s) 329
BsnI GGCC 2 cut(s) 197, 344
Bsp1286I GDGCHC 1 cut(s) 259
Bsp143I GATC 1 cut(s) 163
Bsp19I CCATGG 1 cut(s) 236
BspACI CCGC 1 cut(s) 134
BspANI GGCC 2 cut(s) 197, 344
BspHI TCATGA 1 cut(s) 288
BspLI GGNNCC 2 cut(s) 296, 307
BspT107I GGYRCC 1 cut(s) 305
BsrBI CCGCTC 1 cut(s) 136
BsrDI GCAATG 1 cut(s) 27
BsrI ACTGG 1 cut(s) 83
BssECI CCNNGG 3 cut(s) 147, 192, 236
BssMI GATC 1 cut(s) 163
BssT1I CCWWGG 3 cut(s) 147, 192, 236
Bst4CI ACNGT 1 cut(s) 116
BstAPI GCANNNNNTGC 2 cut(s) 158, 370
BstC8I GCNNGC 3 cut(s) 159, 346, 371
BstDSI CCRYGG 1 cut(s) 236
BstF5I GGATG 1 cut(s) 51
BstKTI GATC 1 cut(s) 166
BstMAI GTCTC 2 cut(s) 110, 273
BstMBI GATC 1 cut(s) 163
BstMWI GCNNNNNNNGC 2 cut(s) 158, 370
BstNSI RCATGY 2 cut(s) 161, 373
BstSLI GKGCMC 1 cut(s) 259
BstXI CCANNNNNNTGG 1 cut(s) 268
BsuI GTATCC 1 cut(s) 313
BsuRI GGCC 2 cut(s) 197, 344
BtgI CCRYGG 1 cut(s) 236
BtrI CACGTC 1 cut(s) 104
BtsCI GGATG 1 cut(s) 51
BtsI GCAGTG 1 cut(s) 371
BtsIMutI CAGTG 2 cut(s) 11, 371
Cac8I GCNNGC 3 cut(s) 159, 346, 371
CciI TCATGA 1 cut(s) 288
CviAII CATG 4 cut(s) 158, 237, 289, 370
CviJI RGCY 5 cut(s) 179, 197, 220, 344, 348
CviKI_1 RGCY 5 cut(s) 179, 197, 220, 344, 348
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
EaeI YGGCCR 2 cut(s) 195, 342
Eco130I CCWWGG 3 cut(s) 147, 192, 236
EcoT14I CCWWGG 3 cut(s) 147, 192, 236
EcoT22I ATGCAT 1 cut(s) 331
ErhI CCWWGG 3 cut(s) 147, 192, 236
Esp3I CGTCTC 1 cut(s) 110
FaeI CATG 4 cut(s) 161, 240, 292, 373
FaiI YATR 5 cut(s) 159, 238, 290, 327, 371
FatI CATG 4 cut(s) 157, 236, 288, 369
FokI GGATG 1 cut(s) 38
FspBI CTAG 1 cut(s) 275
HaeIII GGCC 2 cut(s) 197, 344
Hin1II CATG 4 cut(s) 161, 240, 292, 373
HinfI GANTC 2 cut(s) 119, 128
HphI GGTGA 1 cut(s) 104
Hpy166II GTNNAC 1 cut(s) 233
Hpy188I TCNGA 1 cut(s) 186
Hpy188III TCNNGA 2 cut(s) 125, 289
Hpy8I GTNNAC 1 cut(s) 233
HpyCH4III ACNGT 1 cut(s) 116
HpyCH4IV ACGT 1 cut(s) 103
HpyCH4V TGCA 4 cut(s) 32, 329, 364, 369
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 370
HpySE526I ACGT 1 cut(s) 103
Hsp92II CATG 4 cut(s) 161, 240, 292, 373
Kzo9I GATC 1 cut(s) 163
LmnI GCTCC 1 cut(s) 141
LpnPI CCDG 4 cut(s) 96, 138, 211, 358
MaeI CTAG 1 cut(s) 275
MaeII ACGT 1 cut(s) 103
MaeIII GTNAC 1 cut(s) 116
MalI GATC 1 cut(s) 165
MbiI CCGCTC 1 cut(s) 136
MboI GATC 1 cut(s) 163
MboII GAAGA 2 cut(s) 60, 325
MhlI GDGCHC 1 cut(s) 259
MlsI TGGCCA 1 cut(s) 197
MluCI AATT 2 cut(s) 245, 300
MluNI TGGCCA 1 cut(s) 197
MlyI GAGTC 1 cut(s) 113
MnlI CCTC 6 cut(s) 16, 35, 66, 70, 91, 285
Mox20I TGGCCA 1 cut(s) 197
Mph1103I ATGCAT 1 cut(s) 331
MscI TGGCCA 1 cut(s) 197
MseI TTAA 1 cut(s) 248
Msp20I TGGCCA 1 cut(s) 197
Mva1269I GAATGC 1 cut(s) 329
MwoI GCNNNNNNNGC 2 cut(s) 158, 370
NcoI CCATGG 1 cut(s) 236
NdeII GATC 1 cut(s) 163
NlaIII CATG 4 cut(s) 161, 240, 292, 373
NlaIV GGNNCC 2 cut(s) 296, 307
NmuCI GTSAC 1 cut(s) 116
NsiI ATGCAT 1 cut(s) 331
NspI RCATGY 2 cut(s) 161, 373
PaeI GCATGC 2 cut(s) 161, 373
PagI TCATGA 1 cut(s) 288
PctI GAATGC 1 cut(s) 329
PfeI GAWTC 1 cut(s) 128
PleI GAGTC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 113
PshBI ATTAAT 1 cut(s) 248
PspN4I GGNNCC 2 cut(s) 296, 307
SaqAI TTAA 1 cut(s) 248
Sau3AI GATC 1 cut(s) 163
SchI GAGTC 1 cut(s) 113
SduI GDGCHC 1 cut(s) 259
SetI ASST 5 cut(s) 106, 181, 194, 296, 326
SphI GCATGC 2 cut(s) 161, 373
Sse9I AATT 2 cut(s) 245, 300
SsiI CCGC 1 cut(s) 134
SspMI CTAG 1 cut(s) 275
StyI CCWWGG 3 cut(s) 147, 192, 236
TaaI ACNGT 1 cut(s) 116
TaiI ACGT 1 cut(s) 106
TaqI TCGA 2 cut(s) 96, 336
TasI AATT 2 cut(s) 245, 300
TfiI GAWTC 1 cut(s) 128
Tru1I TTAA 1 cut(s) 248
Tru9I TTAA 1 cut(s) 248
TscAI CASTG 2 cut(s) 18, 371
TseFI GTSAC 1 cut(s) 116
Tsp45I GTSAC 1 cut(s) 116
TspRI CASTG 2 cut(s) 18, 371
VspI ATTAAT 1 cut(s) 248
XceI RCATGY 2 cut(s) 161, 373
XspI CTAG 1 cut(s) 275
Zsp2I ATGCAT 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.