Rmu_sc0002556.1_g000022

Aspartic proteinase CDR1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002556.1
OG0013789
Physical Location & Seq
Forward (+)
80590 .. 80862
273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002556.1_g000022.1.cds

Sequence Viewer

Length: 273 bp
atgccctcaccactgatattctccctcattgcactcattttagtcatcaacatccctccctctatttcttctcctgaaacaccagtcaagggtttcgaggcacgtctcatttaccgtgactctcctgaatctccgctccacaaccacaaggcaacgcatgctgatcttatcaaatcagctcgtcagagaaccttggccagacaaaactacttcaaaaggctaatgtcaagcagtggcggagccacatggaaggctgtctgggctgcagcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

90

Amino Acids

9.94

Weight (kDa)

10.36

Isoelectric Point (pI)

72.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013789)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42980
malus_domestica MD01G1081400.v1.1 MD01G1081500.v1.1 MD01G1081600.v1.1 MD01G1081900.v1.1
prunus_persica Prupe.2G189100_v2.0.a1
pyrus_communis pycom07g14880
rosa_chinensis RchiOBHm_Chr1g0359581
rosa_laevigata RLG00000027860
rosa_multiflora Rmu_sc0002556.1_g000022
rosa_roxburghii Rroxscaffold_4G00296910
rosa_samantha Rh1AG285600 Rh1BG251700 Rh1BG251800 Rh1DG280900 Rh1DG281000
rosa_wichuraiana Rw1G025390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 136
AciI CCGC 2 cut(s) 134, 237
AcoI YGGCCR 1 cut(s) 195
AfiI CCNNNNNNNGG 1 cut(s) 89
AgsI TTSAA 1 cut(s) 214
AjiI CACGTC 1 cut(s) 104
AluBI AGCT 1 cut(s) 179
AluI AGCT 1 cut(s) 179
Alw26I GTCTC 1 cut(s) 110
AoxI GGCC 1 cut(s) 195
ApeKI GCWGC 2 cut(s) 263, 266
BalI TGGCCA 1 cut(s) 197
BbvI GCAGC 1 cut(s) 250
BcoDI GTCTC 1 cut(s) 110
BfaI CTAG 1 cut(s) 271
BfmI CTRYAG 1 cut(s) 264
BisI GCNGC 2 cut(s) 264, 267
BlsI GCNGC 2 cut(s) 265, 268
BmgBI CACGTC 1 cut(s) 104
BmiI GGNNCC 1 cut(s) 241
BsaJI CCNNGG 1 cut(s) 192
Bsc4I CCNNNNNNNGG 1 cut(s) 89
Bse1I ACTGG 1 cut(s) 83
Bse3DI GCAATG 1 cut(s) 27
BseDI CCNNGG 1 cut(s) 192
BseGI GGATG 1 cut(s) 51
BseLI CCNNNNNNNGG 1 cut(s) 89
BseMI GCAATG 1 cut(s) 27
BseNI ACTGG 1 cut(s) 83
BseXI GCAGC 1 cut(s) 250
BshFI GGCC 1 cut(s) 197
BslI CCNNNNNNNGG 1 cut(s) 89
BsmAI GTCTC 1 cut(s) 110
BsmBI CGTCTC 1 cut(s) 110
BsnI GGCC 1 cut(s) 197
Bsp143I GATC 1 cut(s) 163
BspACI CCGC 2 cut(s) 134, 237
BspANI GGCC 1 cut(s) 197
BspLI GGNNCC 1 cut(s) 241
BspMAI CTGCAG 1 cut(s) 268
BsrBI CCGCTC 1 cut(s) 136
BsrDI GCAATG 1 cut(s) 27
BsrI ACTGG 1 cut(s) 83
BssECI CCNNGG 1 cut(s) 192
BssMI GATC 1 cut(s) 163
BssT1I CCWWGG 1 cut(s) 192
Bst4CI ACNGT 1 cut(s) 116
BstAPI GCANNNNNTGC 1 cut(s) 158
BstC8I GCNNGC 1 cut(s) 159
BstF5I GGATG 1 cut(s) 51
BstKTI GATC 1 cut(s) 166
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 1 cut(s) 163
BstMWI GCNNNNNNNGC 2 cut(s) 158, 260
BstNSI RCATGY 1 cut(s) 161
BstSFI CTRYAG 1 cut(s) 264
BstV1I GCAGC 1 cut(s) 250
BsuRI GGCC 1 cut(s) 197
BtrI CACGTC 1 cut(s) 104
BtsCI GGATG 1 cut(s) 51
BtsI GCAGTG 1 cut(s) 238
BtsIMutI CAGTG 2 cut(s) 11, 238
Cac8I GCNNGC 1 cut(s) 159
CviAII CATG 2 cut(s) 158, 246
CviJI RGCY 7 cut(s) 179, 197, 220, 242, 254, 263, 269
CviKI_1 RGCY 7 cut(s) 179, 197, 220, 242, 254, 263, 269
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
EaeI YGGCCR 1 cut(s) 195
EciI GGCGGA 1 cut(s) 252
Eco130I CCWWGG 1 cut(s) 192
EcoT14I CCWWGG 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 192
Esp3I CGTCTC 1 cut(s) 110
FaeI CATG 2 cut(s) 161, 249
FaiI YATR 2 cut(s) 159, 247
FatI CATG 2 cut(s) 157, 245
Fnu4HI GCNGC 2 cut(s) 264, 267
FokI GGATG 1 cut(s) 38
Fsp4HI GCNGC 2 cut(s) 264, 267
FspBI CTAG 1 cut(s) 271
GluI GCNGC 2 cut(s) 264, 267
HaeIII GGCC 1 cut(s) 197
Hin1II CATG 2 cut(s) 161, 249
HinfI GANTC 2 cut(s) 119, 128
Hpy188I TCNGA 1 cut(s) 186
Hpy188III TCNNGA 2 cut(s) 74, 125
HpyAV CCTTC 1 cut(s) 244
HpyCH4III ACNGT 1 cut(s) 116
HpyCH4IV ACGT 1 cut(s) 103
HpyCH4V TGCA 2 cut(s) 32, 266
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 260
HpySE526I ACGT 1 cut(s) 103
Hsp92II CATG 2 cut(s) 161, 249
Kzo9I GATC 1 cut(s) 163
LmnI GCTCC 2 cut(s) 141, 239
LpnPI CCDG 5 cut(s) 87, 96, 138, 211, 244
Lsp1109I GCAGC 1 cut(s) 250
MaeI CTAG 1 cut(s) 271
MaeII ACGT 1 cut(s) 103
MaeIII GTNAC 1 cut(s) 116
MalI GATC 1 cut(s) 165
MbiI CCGCTC 1 cut(s) 136
MboI GATC 1 cut(s) 163
MboII GAAGA 1 cut(s) 60
MlsI TGGCCA 1 cut(s) 197
MluNI TGGCCA 1 cut(s) 197
MlyI GAGTC 1 cut(s) 113
MnlI CCTC 5 cut(s) 16, 35, 66, 70, 91
Mox20I TGGCCA 1 cut(s) 197
MscI TGGCCA 1 cut(s) 197
Msp20I TGGCCA 1 cut(s) 197
MwoI GCNNNNNNNGC 2 cut(s) 158, 260
NdeII GATC 1 cut(s) 163
NlaIII CATG 2 cut(s) 161, 249
NlaIV GGNNCC 1 cut(s) 241
NmuCI GTSAC 1 cut(s) 116
NspI RCATGY 1 cut(s) 161
PaeI GCATGC 1 cut(s) 161
PfeI GAWTC 1 cut(s) 128
PkrI GCNGC 2 cut(s) 265, 268
PleI GAGTC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 113
PspN4I GGNNCC 1 cut(s) 241
PstI CTGCAG 1 cut(s) 268
SatI GCNGC 2 cut(s) 264, 267
Sau3AI GATC 1 cut(s) 163
SchI GAGTC 1 cut(s) 113
SetI ASST 3 cut(s) 106, 181, 194
SfcI CTRYAG 1 cut(s) 264
SphI GCATGC 1 cut(s) 161
SsiI CCGC 2 cut(s) 134, 237
SspMI CTAG 1 cut(s) 271
StyI CCWWGG 1 cut(s) 192
TaaI ACNGT 1 cut(s) 116
TaiI ACGT 1 cut(s) 106
TaqI TCGA 1 cut(s) 96
TfiI GAWTC 1 cut(s) 128
TscAI CASTG 2 cut(s) 18, 238
TseFI GTSAC 1 cut(s) 116
TseI GCWGC 2 cut(s) 263, 266
Tsp45I GTSAC 1 cut(s) 116
TspRI CASTG 2 cut(s) 18, 238
XceI RCATGY 1 cut(s) 161
XspI CTAG 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.