Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005015

Physical Location & Seq

Genomic Coordinates Reverse (-)

18184409 .. 18187358

Gene Structure 2950 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G43910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCTGAAGAACAACAAAACTCAGATCAGAGCAATGGTGGAAACGTTATTCCAACTCCTGAAGAAGTTGCTACGTTCCTGCACAAAACTGTTGAAGAAGGTGGATGGGAAAAATGTTGGGAAGAAGAGATAACACCATGGGACCAAGGGAGAGCCACACCTCTCATTGTTCATCTTGTCGACACTTCCTCACTCCCACTTGGCCGTGCTCTGGTCCCCGGCTGTGGTGGAGGACACGACGTCGTTGCGATGGCAAGTCCTGAACGCTTCGTTGTTGGATTGGATATTTCCGAAAGCGCACTCGCGAAAGCTAATGAGACTTACGGCTCCTCACCAAAGGCAGAGTACTTTTCGTTCGTGAAGGAAGATGTTTTCACGTGGCGTCCTACTGAATTATTCGACCTCATCTTCGATTATGTGTTCTTCTGTGCCATTGAACCGGAGATGAGACCTGCATGGGCTAAATCTATGTATGAACTCTTAAAACCTGACGGCGAACTCATAACTCTCATGTATCCGATTACCGACCACGTTGGTGGACCTCCCTACAAAGTAGATGTCTCTACCTTCGAAGAGGTGTTGGTGCCTATAGGATTTAAGGCAGTGTCTGTCGAGGAGAATCCTCACGCCATTCCAACTCGTAAGGGCAAAGAGAAGCTGGGAAGGTGGAAGAAGATCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008168 GO:0008172 GO:0008757 GO:0009056 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0016020 GO:0016143 GO:0016145 GO:0016740 GO:0016741 GO:0018708 GO:0019748 GO:0019757 GO:0019759 GO:0019760 GO:0019762 GO:0031967 GO:0031975 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044248 GO:0044273 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0071704 GO:0071944 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPMT

Protein Analysis

227

Amino Acids

25.29

Weight (kDa)

4.75

Isoelectric Point (pI)

47.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPMT	PF05724	32 - 208	2.4e-58	Thiopurine S-methyltransferase (TPMT)
Methyltransf_31	PF13847	73 - 169	5.4e-10	Methyltransferase domain
Methyltransf_11	PF08241	73 - 168	5.6e-09	Methyltransferase domain
Methyltransf_25	PF13649	74 - 165	2.1e-11	Methyltransferase domain
Methyltransf_12	PF08242	74 - 167	4.3e-09	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43910 AT2G43910 AT2G43910 AT2G43920 AT2G43920 AT2G43920 AT2G43920 AT2G43920 AT2G43920 AT2G43940
fragaria_vesca	FvH4_1g00240 FvH4_1g00240 FvH4_1g00240
malus_domestica	MD15G1143500.v1.1
prunus_persica	Prupe.7G269600_v2.0.a1 Prupe.7G269600_v2.0.a1 Prupe.7G269600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0084541
rosa_laevigata	RLG00000015625
rosa_multiflora	Rmu_sc0009647.1_g000002
rosa_roxburghii	Rroxscaffold_2G00155980
rosa_rugosa	Rorug01G0454800 Rorug01G0454900 Rorug01G0455000 Rorug01G0455100
rosa_samantha	Rh2AG002900 Rh2BG002500 Rh2CG003000 Rh2DG003000
rosa_wichuraiana	Rw2G000260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	243
Acc36I	ACCTGC	1 cut(s)	460
AccB1I	GGYRCC	1 cut(s)	583
AccI	GTMKAC	1 cut(s)	180
AccII	CGCG	1 cut(s)	305
AclI	AACGTT	1 cut(s)	45
AcoI	YGGCCR	1 cut(s)	202
AcuI	CTGAAG	2 cut(s)	27, 81
AcvI	CACGTG	1 cut(s)	378
AcyI	GRCGYC	2 cut(s)	240, 382
AfaI	GTAC	1 cut(s)	347
AfiI	CCNNNNNNNGG	2 cut(s)	211, 224
AgsI	TTSAA	2 cut(s)	95, 437
AhdI	GACNNNNNGTC	1 cut(s)	239
AleI	CACNNNNGTG	1 cut(s)	534
AluBI	AGCT	2 cut(s)	311, 658
AluI	AGCT	2 cut(s)	311, 658
Alw21I	GWGCWC	1 cut(s)	211
Alw26I	GTCTC	3 cut(s)	311, 442, 565
AlwNI	CAGNNNCTG	1 cut(s)	608
AoxI	GGCC	1 cut(s)	202
ArsI	GACNNNNNNTTYG	4 cut(s)	392, 424, 543, 575
AspLEI	GCGC	1 cut(s)	299
AspS9I	GGNCC	3 cut(s)	142, 214, 539
AsuC2I	CCSGG	1 cut(s)	219
AsuHPI	GGTGA	1 cut(s)	324
AsuII	TTCGAA	1 cut(s)	570
AvaII	GGWCC	3 cut(s)	142, 214, 539
BanI	GGYRCC	1 cut(s)	583
BbrPI	CACGTG	1 cut(s)	378
Bbv12I	GWGCWC	1 cut(s)	211
BccI	CCATC	2 cut(s)	99, 244
BceAI	ACGGC	3 cut(s)	189, 340, 508
BcgI	CGANNNNNNTGC	2 cut(s)	227, 261
BciVI	GTATCC	1 cut(s)	525
BcnI	CCSGG	1 cut(s)	219
BcoDI	GTCTC	3 cut(s)	311, 442, 565
BfmI	CTRYAG	1 cut(s)	588
BfuAI	ACCTGC	1 cut(s)	460
BfuI	GTATCC	1 cut(s)	525
BmcAI	AGTACT	1 cut(s)	347
Bme1390I	CCNGG	1 cut(s)	219
Bme18I	GGWCC	3 cut(s)	142, 214, 539
BmeRI	GACNNNNNGTC	1 cut(s)	239
BmgT120I	GGNCC	3 cut(s)	142, 214, 539
BmiI	GGNNCC	4 cut(s)	143, 216, 328, 585
BmrFI	CCNGG	1 cut(s)	219
Bpu14I	TTCGAA	1 cut(s)	570
BpuMI	CCSGG	1 cut(s)	219
BsaAI	YACGTR	1 cut(s)	378
BsaHI	GRCGYC	2 cut(s)	240, 382
BsaI	GGTCTC	1 cut(s)	442
BsaJI	CCNNGG	3 cut(s)	137, 145, 217
BsaWI	WCCGGW	1 cut(s)	439
Bsc4I	CCNNNNNNNGG	2 cut(s)	211, 224
Bse3DI	GCAATG	1 cut(s)	40
BseDI	CCNNGG	3 cut(s)	137, 145, 217
BseGI	GGATG	1 cut(s)	110
BseLI	CCNNNNNNNGG	2 cut(s)	211, 224
BseMI	GCAATG	1 cut(s)	40
BseMII	CTCAG	1 cut(s)	36
BseRI	GAGGAG	2 cut(s)	319, 629
BseYI	CCCAGC	1 cut(s)	658
BsgI	GTGCAG	1 cut(s)	65
Bsh1236I	CGCG	1 cut(s)	305
BshFI	GGCC	1 cut(s)	204
BshNI	GGYRCC	1 cut(s)	583
BsiHKAI	GWGCWC	1 cut(s)	211
BsiSI	CCGG	2 cut(s)	219, 440
BslFI	GGGAC	2 cut(s)	155, 200
BslI	CCNNNNNNNGG	2 cut(s)	211, 224
BsmAI	GTCTC	3 cut(s)	311, 442, 565
BsmFI	GGGAC	2 cut(s)	155, 200
BsnI	GGCC	1 cut(s)	204
Bso31I	GGTCTC	1 cut(s)	442
Bsp119I	TTCGAA	1 cut(s)	570
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp143I	GATC	2 cut(s)	25, 675
Bsp19I	CCATGG	1 cut(s)	137
Bsp68I	TCGCGA	1 cut(s)	305
BspANI	GGCC	1 cut(s)	204
BspCNI	CTCAG	1 cut(s)	35
BspFNI	CGCG	1 cut(s)	305
BspLI	GGNNCC	4 cut(s)	143, 216, 328, 585
BspMI	ACCTGC	1 cut(s)	460
BspT104I	TTCGAA	1 cut(s)	570
BspT107I	GGYRCC	1 cut(s)	583
BspTNI	GGTCTC	1 cut(s)	442
BsrDI	GCAATG	1 cut(s)	40
BssECI	CCNNGG	3 cut(s)	137, 145, 217
BssMI	GATC	2 cut(s)	25, 675
BssNI	GRCGYC	2 cut(s)	240, 382
BssT1I	CCWWGG	2 cut(s)	137, 145
Bst4CI	ACNGT	1 cut(s)	91
Bst6I	CTCTTC	2 cut(s)	120, 567
BstACI	GRCGYC	2 cut(s)	240, 382
BstBAI	YACGTR	1 cut(s)	378
BstBI	TTCGAA	1 cut(s)	570
BstDEI	CTNAG	1 cut(s)	22
BstDSI	CCRYGG	1 cut(s)	137
BstF5I	GGATG	1 cut(s)	110
BstFNI	CGCG	1 cut(s)	305
BstHHI	GCGC	1 cut(s)	299
BstKTI	GATC	2 cut(s)	28, 678
BstMAI	GTCTC	3 cut(s)	311, 442, 565
BstMBI	GATC	2 cut(s)	25, 675
BstSCI	CCNGG	1 cut(s)	217
BstSFI	CTRYAG	1 cut(s)	588
BstUI	CGCG	1 cut(s)	305
BstXI	CCANNNNNNTGG	1 cut(s)	536
BsuI	GTATCC	1 cut(s)	525
BsuRI	GGCC	1 cut(s)	204
BtgI	CCRYGG	1 cut(s)	137
BtgZI	GCGATG	1 cut(s)	263
BtsCI	GGATG	1 cut(s)	110
BtsI	GCAGTG	1 cut(s)	609
BtsIMutI	CAGTG	1 cut(s)	609
BtuMI	TCGCGA	1 cut(s)	305
BveI	ACCTGC	1 cut(s)	460
CaiI	CAGNNNCTG	1 cut(s)	608
CfoI	GCGC	1 cut(s)	299
Cfr13I	GGNCC	3 cut(s)	142, 214, 539
CseI	GACGC	1 cut(s)	371
Csp6I	GTAC	1 cut(s)	346
CviAII	CATG	3 cut(s)	138, 456, 511
CviJI	RGCY	8 cut(s)	5, 155, 204, 222, 311, 327, 461, 658
CviKI_1	RGCY	8 cut(s)	5, 155, 204, 222, 311, 327, 461, 658
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	1 cut(s)	22
DpnI	GATC	2 cut(s)	27, 677
DpnII	GATC	2 cut(s)	25, 675
DriI	GACNNNNNGTC	1 cut(s)	239
EaeI	YGGCCR	1 cut(s)	202
Eam1104I	CTCTTC	2 cut(s)	120, 567
Eam1105I	GACNNNNNGTC	1 cut(s)	239
EarI	CTCTTC	2 cut(s)	120, 567
Eco130I	CCWWGG	2 cut(s)	137, 145
Eco31I	GGTCTC	1 cut(s)	442
Eco47I	GGWCC	3 cut(s)	142, 214, 539
Eco57I	CTGAAG	2 cut(s)	27, 81
Eco72I	CACGTG	1 cut(s)	378
EcoT14I	CCWWGG	2 cut(s)	137, 145
ErhI	CCWWGG	2 cut(s)	137, 145
FaeI	CATG	3 cut(s)	141, 459, 514
FaiI	YATR	8 cut(s)	139, 417, 457, 470, 474, 503, 512, 590
FaqI	GGGAC	2 cut(s)	155, 200
FatI	CATG	3 cut(s)	137, 455, 510
FblI	GTMKAC	1 cut(s)	180
FokI	GGATG	1 cut(s)	117
GlaI	GCGC	1 cut(s)	298
GsaI	CCCAGC	1 cut(s)	662
HaeIII	GGCC	1 cut(s)	204
HapII	CCGG	2 cut(s)	219, 440
HgaI	GACGC	1 cut(s)	371
HhaI	GCGC	1 cut(s)	299
Hin1I	GRCGYC	2 cut(s)	240, 382
Hin1II	CATG	3 cut(s)	141, 459, 514
Hin6I	GCGC	1 cut(s)	297
HinP1I	GCGC	1 cut(s)	297
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HinfI	GANTC	1 cut(s)	619
HpaII	CCGG	2 cut(s)	219, 440
HphI	GGTGA	1 cut(s)	324
Hpy166II	GTNNAC	2 cut(s)	181, 539
Hpy188I	TCNGA	4 cut(s)	25, 30, 292, 519
Hpy188III	TCNNGA	4 cut(s)	59, 260, 304, 358
Hpy8I	GTNNAC	2 cut(s)	181, 539
Hpy99I	CGWCG	2 cut(s)	242, 245
HpyAV	CCTTC	4 cut(s)	92, 355, 577, 657
HpyCH4III	ACNGT	1 cut(s)	91
HpyCH4IV	ACGT	5 cut(s)	45, 74, 240, 377, 531
HpyCH4V	TGCA	2 cut(s)	82, 455
HpyF3I	CTNAG	1 cut(s)	22
HpySE526I	ACGT	5 cut(s)	45, 74, 240, 377, 531
Hsp92I	GRCGYC	2 cut(s)	240, 382
Hsp92II	CATG	3 cut(s)	141, 459, 514
HspAI	GCGC	1 cut(s)	297
Kzo9I	GATC	2 cut(s)	25, 675
LmnI	GCTCC	1 cut(s)	332
LpnPI	CCDG	9 cut(s)	72, 92, 197, 232, 273, 453, 465, 501, 644
MaeII	ACGT	5 cut(s)	45, 74, 240, 377, 531
MalI	GATC	2 cut(s)	27, 677
MboI	GATC	2 cut(s)	25, 675
MfeI	CAATTG	1 cut(s)	679
MhlI	GDGCHC	1 cut(s)	211
MluCI	AATT	2 cut(s)	392, 679
MmeI	TCCRAC	3 cut(s)	77, 256, 659
MnlI	CCTC	9 cut(s)	171, 199, 224, 340, 413, 552, 568, 607, 633
MseI	TTAA	2 cut(s)	482, 597
MslI	CAYNNNNRTG	1 cut(s)	534
MspI	CCGG	2 cut(s)	219, 440
MspR9I	CCNGG	1 cut(s)	219
MunI	CAATTG	1 cut(s)	679
MvnI	CGCG	1 cut(s)	305
NciI	CCSGG	1 cut(s)	219
NcoI	CCATGG	1 cut(s)	137
NdeII	GATC	2 cut(s)	25, 675
NlaIII	CATG	3 cut(s)	141, 459, 514
NlaIV	GGNNCC	4 cut(s)	143, 216, 328, 585
NruI	TCGCGA	1 cut(s)	305
NspV	TTCGAA	1 cut(s)	570
OliI	CACNNNNGTG	1 cut(s)	534
PfeI	GAWTC	1 cut(s)	619
PmaCI	CACGTG	1 cut(s)	378
PmlI	CACGTG	1 cut(s)	378
Ppu21I	YACGTR	1 cut(s)	378
Psp1406I	AACGTT	1 cut(s)	45
PspCI	CACGTG	1 cut(s)	378
PspFI	CCCAGC	1 cut(s)	658
PspN4I	GGNNCC	4 cut(s)	143, 216, 328, 585
PspPI	GGNCC	3 cut(s)	142, 214, 539
PsrI	GAACNNNNNNTAC	2 cut(s)	338, 370
PstNI	CAGNNNCTG	1 cut(s)	608
RruI	TCGCGA	1 cut(s)	305
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
RseI	CAYNNNNRTG	1 cut(s)	534
SalI	GTCGAC	1 cut(s)	179
SaqAI	TTAA	2 cut(s)	482, 597
Sau3AI	GATC	2 cut(s)	25, 675
Sau96I	GGNCC	3 cut(s)	142, 214, 539
ScaI	AGTACT	1 cut(s)	347
ScrFI	CCNGG	1 cut(s)	219
SduI	GDGCHC	1 cut(s)	211
SfcI	CTRYAG	1 cut(s)	588
SfuI	TTCGAA	1 cut(s)	570
SinI	GGWCC	3 cut(s)	142, 214, 539
SmiMI	CAYNNNNRTG	1 cut(s)	534
Sse9I	AATT	2 cut(s)	392, 679
StyD4I	CCNGG	1 cut(s)	217
StyI	CCWWGG	2 cut(s)	137, 145
TaaI	ACNGT	1 cut(s)	91
TaiI	ACGT	5 cut(s)	48, 77, 243, 380, 534
TaqI	TCGA	5 cut(s)	180, 399, 411, 570, 612
TasI	AATT	2 cut(s)	392, 679
TatI	WGTACW	1 cut(s)	345
TfiI	GAWTC	1 cut(s)	619
Tru1I	TTAA	2 cut(s)	482, 597
Tru9I	TTAA	2 cut(s)	482, 597
TscAI	CASTG	1 cut(s)	609
TspDTI	ATGAA	2 cut(s)	161, 489
TspRI	CASTG	1 cut(s)	609
VpaK11BI	GGWCC	3 cut(s)	142, 214, 539
XmiI	GTMKAC	1 cut(s)	180
ZraI	GACGTC	1 cut(s)	241
ZrmI	AGTACT	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.