Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005015

Physical Location & Seq

Genomic Coordinates Forward (+)

259486 .. 261499

Gene Structure 2014 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015625

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGTCCTCTCAATTTTCATCATCATTGATTAGGACTTGGAGGAATCTCAATCTGCTGCCTTTGATTCCTCCCACTCCCACTCCCACTCCCACAAGTAGAAGAAGGGTGTTCCTTGGTGGTGCCAACCAACTGGGGATGAGGATGATGATGATGATGAAGAAGAGAGAGCAAGGAGACCCCGAGAGTCGGGAGAACCACAAACCTCGTGGTGTTAACGAGCTTCAGCAACTCTTGCACAGCGACTCTACAGGTGGTGGTGATTGGGACAAGTGCTGGGAGCAAGGTCTCACCCCTTGGGATCTAGGACGGCCAACTCCTGTTATTGCTCATCTTCATAGGTTGGGAGACCTTCCCAAGGGCAGGGCTCTTGTCCCCGGATGCGGCACTGGTTATGATGTTGTAGAGATTGCATGCCCTGAACGCCATGTTACCGGTTTAGACATTTCACACAATGCCATTAACAAGGCCCTCCAGTTGTTTTCCTCACTACCCAATGCAATGCATTTTACCTTCTTAAAGGTGGACTTTTTTACCTGGCATCCAACTGAATTGTTTGATCTCATATTTGATTATACGTTCTTCTGTGCTATTGAACCAGACATGAGATCAGCATGGGCACAAAAGATGAGGGATATCTTAAAACCAGATGGAGAGCTCATAACGCTAATGTTTCCCATCAGTGATCATATTGGTGGACCCCCATACAAAGTGTCAGTTTCAGATTATGAAGAGGTGTTGCATCCCATGGGCTTTAAAGCAATCACCATCTTGGATAATGATCTGGCTGTCCTACCTCGCAAGGGACGAGAGAAGCTAGGAAGGTGGAAGAGGCCTGCAAGTAAATCCTCTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008168 GO:0008172 GO:0008757 GO:0009056 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0016020 GO:0016143 GO:0016145 GO:0016740 GO:0016741 GO:0018708 GO:0019748 GO:0019757 GO:0019759 GO:0019760 GO:0019762 GO:0031967 GO:0031975 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044248 GO:0044273 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0071704 GO:0071944 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPMT

Protein Analysis

285

Amino Acids

32.11

Weight (kDa)

8.65

Isoelectric Point (pI)

51.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPMT	PF05724	86 - 261	1.7e-44	Thiopurine S-methyltransferase (TPMT)
Methyltransf_31	PF13847	125 - 221	3.7e-10	Methyltransferase domain
Methyltransf_11	PF08241	125 - 220	4e-08	Methyltransferase domain
Methyltransf_25	PF13649	126 - 217	1.5e-11	Methyltransferase domain
Methyltransf_12	PF08242	126 - 219	2.2e-10	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43910 AT2G43910 AT2G43910 AT2G43920 AT2G43920 AT2G43920 AT2G43920 AT2G43920 AT2G43920 AT2G43940
fragaria_vesca	FvH4_1g00240 FvH4_1g00240 FvH4_1g00240
malus_domestica	MD15G1143500.v1.1
prunus_persica	Prupe.7G269600_v2.0.a1 Prupe.7G269600_v2.0.a1 Prupe.7G269600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0084541
rosa_laevigata	RLG00000015625
rosa_multiflora	Rmu_sc0009647.1_g000002
rosa_roxburghii	Rroxscaffold_2G00155980
rosa_rugosa	Rorug01G0454800 Rorug01G0454900 Rorug01G0455000 Rorug01G0455100
rosa_samantha	Rh2AG002900 Rh2BG002500 Rh2CG003000 Rh2DG003000
rosa_wichuraiana	Rw2G000260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	119
AciI	CCGC	1 cut(s)	381
AclWI	GGATC	1 cut(s)	306
AcoI	YGGCCR	1 cut(s)	308
AcuI	CTGAAG	1 cut(s)	206
AfiI	CCNNNNNNNGG	5 cut(s)	186, 355, 360, 380, 800
AgeI	ACCGGT	1 cut(s)	431
AgsI	TTSAA	1 cut(s)	593
AjnI	CCWGG	1 cut(s)	533
AluBI	AGCT	3 cut(s)	220, 655, 814
AluI	AGCT	3 cut(s)	220, 655, 814
Alw21I	GWGCWC	1 cut(s)	657
Alw26I	GTCTC	3 cut(s)	168, 290, 339
AlwI	GGATC	1 cut(s)	306
Ama87I	CYCGRG	1 cut(s)	179
AoxI	GGCC	3 cut(s)	308, 465, 830
ApeKI	GCWGC	1 cut(s)	55
AsiGI	ACCGGT	1 cut(s)	431
AspS9I	GGNCC	2 cut(s)	466, 695
AsuC2I	CCSGG	1 cut(s)	375
AsuHPI	GGTGA	3 cut(s)	269, 280, 754
AvaI	CYCGRG	1 cut(s)	179
AvaII	GGWCC	1 cut(s)	695
BaeGI	GKGCMC	1 cut(s)	619
BanI	GGYRCC	1 cut(s)	119
BanII	GRGCYC	2 cut(s)	367, 657
BauI	CACGAG	1 cut(s)	204
Bbv12I	GWGCWC	1 cut(s)	657
BbvI	GCAGC	1 cut(s)	42
BccI	CCATC	3 cut(s)	641, 683, 773
BceAI	ACGGC	1 cut(s)	323
BciT130I	CCWGG	1 cut(s)	535
BclI	TGATCA	1 cut(s)	682
BcnI	CCSGG	1 cut(s)	375
BcoDI	GTCTC	3 cut(s)	168, 290, 339
BfaI	CTAG	2 cut(s)	302, 815
BfmI	CTRYAG	1 cut(s)	246
BisI	GCNGC	2 cut(s)	56, 382
BlsI	GCNGC	2 cut(s)	57, 383
Bme1390I	CCNGG	2 cut(s)	375, 535
Bme18I	GGWCC	1 cut(s)	695
BmeT110I	CYCGRG	1 cut(s)	179
BmgT120I	GGNCC	2 cut(s)	466, 695
BmiI	GGNNCC	2 cut(s)	121, 697
BmrFI	CCNGG	2 cut(s)	375, 535
BmrI	ACTGGG	1 cut(s)	140
BmsI	GCATC	3 cut(s)	368, 547, 748
BmuI	ACTGGG	1 cut(s)	140
BpmI	CTGGAG	1 cut(s)	455
BpuMI	CCSGG	1 cut(s)	375
BsaBI	GATNNNNATC	1 cut(s)	777
BsaI	GGTCTC	3 cut(s)	168, 290, 339
BsaJI	CCNNGG	5 cut(s)	112, 293, 354, 373, 744
BsaWI	WCCGGW	1 cut(s)	431
BsaXI	ACNNNNNCTCC	4 cut(s)	64, 70, 94, 100
Bsc4I	CCNNNNNNNGG	5 cut(s)	186, 355, 360, 380, 800
Bse118I	RCCGGY	1 cut(s)	431
Bse1I	ACTGG	3 cut(s)	135, 391, 472
Bse3DI	GCAATG	1 cut(s)	504
Bse8I	GATNNNNATC	1 cut(s)	777
BseBI	CCWGG	1 cut(s)	535
BseDI	CCNNGG	5 cut(s)	112, 293, 354, 373, 744
BseGI	GGATG	5 cut(s)	141, 147, 383, 538, 739
BseJI	GATNNNNATC	1 cut(s)	777
BseLI	CCNNNNNNNGG	5 cut(s)	186, 355, 360, 380, 800
BseMI	GCAATG	1 cut(s)	504
BseNI	ACTGG	3 cut(s)	135, 391, 472
BseSI	GKGCMC	1 cut(s)	619
BseXI	GCAGC	1 cut(s)	42
BseYI	CCCAGC	1 cut(s)	273
BshFI	GGCC	3 cut(s)	310, 467, 832
BshNI	GGYRCC	1 cut(s)	119
BshTI	ACCGGT	1 cut(s)	431
BsiHKAI	GWGCWC	1 cut(s)	657
BsiHKCI	CYCGRG	1 cut(s)	179
BsiSI	CCGG	2 cut(s)	375, 432
BslFI	GGGAC	3 cut(s)	278, 356, 816
BslI	CCNNNNNNNGG	5 cut(s)	186, 355, 360, 380, 800
BsmAI	GTCTC	3 cut(s)	168, 290, 339
BsmFI	GGGAC	3 cut(s)	278, 356, 816
BsnI	GGCC	3 cut(s)	310, 467, 832
Bso31I	GGTCTC	3 cut(s)	168, 290, 339
BsoBI	CYCGRG	1 cut(s)	179
Bsp1286I	GDGCHC	3 cut(s)	367, 619, 657
Bsp143I	GATC	5 cut(s)	298, 556, 605, 682, 778
Bsp19I	CCATGG	1 cut(s)	744
BspACI	CCGC	1 cut(s)	381
BspANI	GGCC	3 cut(s)	310, 467, 832
BspLI	GGNNCC	2 cut(s)	121, 697
BspPI	GGATC	1 cut(s)	306
BspT107I	GGYRCC	1 cut(s)	119
BspTNI	GGTCTC	3 cut(s)	168, 290, 339
BsrDI	GCAATG	1 cut(s)	504
BsrFI	RCCGGY	1 cut(s)	431
BsrI	ACTGG	3 cut(s)	135, 391, 472
BssAI	RCCGGY	1 cut(s)	431
BssECI	CCNNGG	5 cut(s)	112, 293, 354, 373, 744
BssMI	GATC	5 cut(s)	298, 556, 605, 682, 778
BssSI	CACGAG	1 cut(s)	204
BssT1I	CCWWGG	4 cut(s)	112, 293, 354, 744
Bst2BI	CACGAG	1 cut(s)	204
Bst2UI	CCWGG	1 cut(s)	535
Bst6I	CTCTTC	3 cut(s)	155, 723, 821
BstAPI	GCANNNNNTGC	1 cut(s)	232
BstC8I	GCNNGC	2 cut(s)	412, 834
BstDSI	CCRYGG	1 cut(s)	744
BstENI	CCTNNNNNAGG	1 cut(s)	353
BstF5I	GGATG	5 cut(s)	141, 147, 383, 538, 739
BstKTI	GATC	5 cut(s)	301, 559, 608, 685, 781
BstMAI	GTCTC	3 cut(s)	168, 290, 339
BstMBI	GATC	5 cut(s)	298, 556, 605, 682, 778
BstMWI	GCNNNNNNNGC	3 cut(s)	232, 420, 661
BstNI	CCWGG	1 cut(s)	535
BstNSI	RCATGY	1 cut(s)	414
BstSCI	CCNGG	2 cut(s)	373, 533
BstSFI	CTRYAG	1 cut(s)	246
BstSLI	GKGCMC	1 cut(s)	619
BstV1I	GCAGC	1 cut(s)	42
BstX2I	RGATCY	1 cut(s)	298
BstXI	CCANNNNNNTGG	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	298
BsuRI	GGCC	3 cut(s)	310, 467, 832
BtgI	CCRYGG	1 cut(s)	744
BtsCI	GGATG	5 cut(s)	141, 147, 383, 538, 739
BtsIMutI	CAGTG	2 cut(s)	384, 685
Cac8I	GCNNGC	2 cut(s)	412, 834
Cfr10I	RCCGGY	1 cut(s)	431
Cfr13I	GGNCC	2 cut(s)	466, 695
CspAI	ACCGGT	1 cut(s)	431
CspCI	CAANNNNNGTGG	2 cut(s)	187, 222
CviAII	CATG	5 cut(s)	411, 425, 601, 612, 745
CviJI	RGCY	9 cut(s)	220, 310, 365, 467, 655, 750, 785, 814, 832
CviKI_1	RGCY	9 cut(s)	220, 310, 365, 467, 655, 750, 785, 814, 832
DpnI	GATC	5 cut(s)	300, 558, 607, 684, 780
DpnII	GATC	5 cut(s)	298, 556, 605, 682, 778
DraI	TTTAAA	1 cut(s)	754
EaeI	YGGCCR	1 cut(s)	308
Eam1104I	CTCTTC	3 cut(s)	155, 723, 821
EarI	CTCTTC	3 cut(s)	155, 723, 821
Ecl136II	GAGCTC	1 cut(s)	655
Eco130I	CCWWGG	4 cut(s)	112, 293, 354, 744
Eco147I	AGGCCT	1 cut(s)	832
Eco24I	GRGCYC	2 cut(s)	367, 657
Eco31I	GGTCTC	3 cut(s)	168, 290, 339
Eco32I	GATATC	1 cut(s)	634
Eco47I	GGWCC	1 cut(s)	695
Eco53kI	GAGCTC	1 cut(s)	655
Eco57I	CTGAAG	1 cut(s)	206
Eco88I	CYCGRG	1 cut(s)	179
EcoICRI	GAGCTC	1 cut(s)	655
EcoNI	CCTNNNNNAGG	1 cut(s)	353
EcoO109I	RGGNCCY	1 cut(s)	466
EcoRII	CCWGG	1 cut(s)	533
EcoRV	GATATC	1 cut(s)	634
EcoT14I	CCWWGG	4 cut(s)	112, 293, 354, 744
EcoT22I	ATGCAT	1 cut(s)	504
EcoT38I	GRGCYC	2 cut(s)	367, 657
ErhI	CCWWGG	4 cut(s)	112, 293, 354, 744
FaeI	CATG	5 cut(s)	414, 428, 604, 615, 748
FalI	AAGNNNNNCTT	2 cut(s)	509, 541
FaqI	GGGAC	3 cut(s)	278, 356, 816
FatI	CATG	5 cut(s)	410, 424, 600, 611, 744
FbaI	TGATCA	1 cut(s)	682
Fnu4HI	GCNGC	2 cut(s)	56, 382
FokI	GGATG	5 cut(s)	148, 154, 390, 525, 726
FriOI	GRGCYC	2 cut(s)	367, 657
Fsp4HI	GCNGC	2 cut(s)	56, 382
FspBI	CTAG	2 cut(s)	302, 815
GluI	GCNGC	2 cut(s)	56, 382
GsaI	CCCAGC	1 cut(s)	277
GsuI	CTGGAG	1 cut(s)	455
HaeIII	GGCC	3 cut(s)	310, 467, 832
HapII	CCGG	2 cut(s)	375, 432
Hin1II	CATG	5 cut(s)	414, 428, 604, 615, 748
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HinfI	GANTC	4 cut(s)	43, 64, 184, 242
HpaI	GTTAAC	1 cut(s)	214
HpaII	CCGG	2 cut(s)	375, 432
HphI	GGTGA	3 cut(s)	269, 280, 754
Hpy166II	GTNNAC	3 cut(s)	214, 523, 695
Hpy188I	TCNGA	1 cut(s)	721
Hpy188III	TCNNGA	1 cut(s)	188
Hpy8I	GTNNAC	3 cut(s)	214, 523, 695
HpyAV	CCTTC	4 cut(s)	96, 359, 520, 813
HpyCH4IV	ACGT	1 cut(s)	575
HpyCH4V	TGCA	6 cut(s)	235, 410, 497, 502, 739, 836
HpyF10VI	GCNNNNNNNGC	3 cut(s)	232, 420, 661
HpySE526I	ACGT	1 cut(s)	575
Hsp92II	CATG	5 cut(s)	414, 428, 604, 615, 748
Ksp22I	TGATCA	1 cut(s)	682
KspAI	GTTAAC	1 cut(s)	214
Kzo9I	GATC	5 cut(s)	298, 556, 605, 682, 778
LmnI	GCTCC	1 cut(s)	277
Lsp1109I	GCAGC	1 cut(s)	42
LweI	GCATC	3 cut(s)	368, 547, 748
MaeI	CTAG	2 cut(s)	302, 815
MaeII	ACGT	1 cut(s)	575
MaeIII	GTNAC	1 cut(s)	427
MalI	GATC	5 cut(s)	300, 558, 607, 684, 780
MboI	GATC	5 cut(s)	298, 556, 605, 682, 778
MboII	GAAGA	7 cut(s)	111, 169, 172, 323, 571, 740, 838
MflI	RGATCY	1 cut(s)	298
MhlI	GDGCHC	3 cut(s)	367, 619, 657
MluCI	AATT	2 cut(s)	11, 548
MlyI	GAGTC	2 cut(s)	193, 236
MmeI	TCCRAC	1 cut(s)	566
Mph1103I	ATGCAT	1 cut(s)	504
MseI	TTAA	5 cut(s)	213, 459, 515, 638, 753
MslI	CAYNNNNRTG	1 cut(s)	690
MspI	CCGG	2 cut(s)	375, 432
MspR9I	CCNGG	2 cut(s)	375, 535
MvaI	CCWGG	1 cut(s)	535
MwoI	GCNNNNNNNGC	3 cut(s)	232, 420, 661
NciI	CCSGG	1 cut(s)	375
NcoI	CCATGG	1 cut(s)	744
NdeII	GATC	5 cut(s)	298, 556, 605, 682, 778
NlaIII	CATG	5 cut(s)	414, 428, 604, 615, 748
NlaIV	GGNNCC	2 cut(s)	121, 697
NsiI	ATGCAT	1 cut(s)	504
NspI	RCATGY	1 cut(s)	414
PaeI	GCATGC	1 cut(s)	414
PceI	AGGCCT	1 cut(s)	832
PcsI	WCGNNNNNNNCGW	1 cut(s)	802
PfeI	GAWTC	2 cut(s)	43, 64
PinAI	ACCGGT	1 cut(s)	431
PkrI	GCNGC	2 cut(s)	57, 383
PleI	GAGTC	2 cut(s)	192, 236
PpsI	GAGTC	2 cut(s)	192, 236
Psp124BI	GAGCTC	1 cut(s)	657
Psp6I	CCWGG	1 cut(s)	533
PspFI	CCCAGC	1 cut(s)	273
PspGI	CCWGG	1 cut(s)	533
PspN4I	GGNNCC	2 cut(s)	121, 697
PspPI	GGNCC	2 cut(s)	466, 695
PsuI	RGATCY	1 cut(s)	298
RseI	CAYNNNNRTG	1 cut(s)	690
SacI	GAGCTC	1 cut(s)	657
SaqAI	TTAA	5 cut(s)	213, 459, 515, 638, 753
SatI	GCNGC	2 cut(s)	56, 382
Sau3AI	GATC	5 cut(s)	298, 556, 605, 682, 778
Sau96I	GGNCC	2 cut(s)	466, 695
SchI	GAGTC	2 cut(s)	193, 236
ScrFI	CCNGG	2 cut(s)	375, 535
SduI	GDGCHC	3 cut(s)	367, 619, 657
SfaNI	GCATC	3 cut(s)	368, 547, 748
SfcI	CTRYAG	1 cut(s)	246
SinI	GGWCC	1 cut(s)	695
SmiMI	CAYNNNNRTG	1 cut(s)	690
SphI	GCATGC	1 cut(s)	414
Sse9I	AATT	2 cut(s)	11, 548
SseBI	AGGCCT	1 cut(s)	832
SsiI	CCGC	1 cut(s)	381
SspMI	CTAG	2 cut(s)	302, 815
SstI	GAGCTC	1 cut(s)	657
StuI	AGGCCT	1 cut(s)	832
StyD4I	CCNGG	2 cut(s)	373, 533
StyI	CCWWGG	4 cut(s)	112, 293, 354, 744
TaiI	ACGT	1 cut(s)	578
TasI	AATT	2 cut(s)	11, 548
TauI	GCSGC	1 cut(s)	384
TfiI	GAWTC	2 cut(s)	43, 64
Tru1I	TTAA	5 cut(s)	213, 459, 515, 638, 753
Tru9I	TTAA	5 cut(s)	213, 459, 515, 638, 753
TscAI	CASTG	2 cut(s)	391, 685
TseI	GCWGC	1 cut(s)	55
TspDTI	ATGAA	4 cut(s)	6, 170, 323, 741
TspRI	CASTG	2 cut(s)	391, 685
VpaK11BI	GGWCC	1 cut(s)	695
XagI	CCTNNNNNAGG	1 cut(s)	353
XceI	RCATGY	1 cut(s)	414
XcmI	CCANNNNNNNNNTGG	1 cut(s)	203
XspI	CTAG	2 cut(s)	302, 815
Zsp2I	ATGCAT	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.