Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005015

Physical Location & Seq

Genomic Coordinates Reverse (-)

18189004 .. 18191348

Gene Structure 2345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G43920.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCTGAAGAACAACAAAATTCGAGTTATAGCATTGGTGGAAACATTCTTCCTACTCCTGAAGAAGCTGCTACATTCCAGCCCCAAGTTGTTGCAGAAGGCGGATGGGACAAATGTTGGGAAGACGGGGTAACACCATGGGACCAAGGAAGAGCCACACCTCTCATTCTTCATCTTCTCGACTCTTCAGCTCTCCCTCTTGGCCGTACCCTTGTCCCCGGCTGTGGCGGAGGACACGACGTCGTTGCGATGGCAAGCCCTGAACGTTTCGTAGTTGGATTGGATATTTCTGACAAGGCTCTCAACAAAGCTAATGAGACTTACGGCTCCTCACCGAAGGCAGAGTACTTTTCGTTCGTGAAGGAAGATGTTTTCACTTGGCGTCCTAACGAATTATTTGACCTCATCTTCGATTATGTGTTTTTCTGCGCAATTGAACCGGAGATGAGACCTGCATGGGGTAAATCCATGCATGAACTCCTCAAACCTGACGGAGAACTTATAACTCTTATGTATCCGATGACCGACCACGAGGGTGGAGCTCCCTACAAAGTAGCTTTGTCTTCCTACGAAGATGTGTTGGTTCCGGTAGGATTTAAAGCGGTGTCCGTTGAGGAGAACCCAGACTCCATTCCCACTCGTAAGGGCAAAGAGAAGCTTGCGAGGTGGAAGAAGATTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008168 GO:0008172 GO:0008757 GO:0009056 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0016020 GO:0016143 GO:0016145 GO:0016740 GO:0016741 GO:0018708 GO:0019748 GO:0019757 GO:0019759 GO:0019760 GO:0019762 GO:0031967 GO:0031975 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044248 GO:0044273 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0071704 GO:0071944 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPMT

Protein Analysis

227

Amino Acids

25.13

Weight (kDa)

4.74

Isoelectric Point (pI)

49.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPMT	PF05724	1 - 130	1.5e-35	Thiopurine S-methyltransferase (TPMT)
Methyltransf_25	PF13649	5 - 82	1.5e-07	Methyltransferase domain
Methyltransf_12	PF08242	7 - 84	9.7e-06	Methyltransferase domain
Methyltransf_11	PF08241	7 - 85	1e-05	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43910 AT2G43910 AT2G43910 AT2G43920 AT2G43920 AT2G43920 AT2G43920 AT2G43920 AT2G43920 AT2G43940
fragaria_vesca	FvH4_1g00240 FvH4_1g00240 FvH4_1g00240
malus_domestica	MD15G1143500.v1.1
prunus_persica	Prupe.7G269600_v2.0.a1 Prupe.7G269600_v2.0.a1 Prupe.7G269600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0084541
rosa_laevigata	RLG00000015625
rosa_multiflora	Rmu_sc0009647.1_g000002
rosa_roxburghii	Rroxscaffold_2G00155980
rosa_rugosa	Rorug01G0454800 Rorug01G0454900 Rorug01G0455000 Rorug01G0455100
rosa_samantha	Rh2AG002900 Rh2BG002500 Rh2CG003000 Rh2DG003000
rosa_wichuraiana	Rw2G000260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	503
AatII	GACGTC	1 cut(s)	243
Acc16I	TGCGCA	1 cut(s)	430
Acc36I	ACCTGC	1 cut(s)	460
AciI	CCGC	3 cut(s)	102, 228, 602
AclI	AACGTT	1 cut(s)	265
AcoI	YGGCCR	1 cut(s)	202
AcsI	RAATTY	1 cut(s)	19
AcuI	CTGAAG	3 cut(s)	27, 81, 171
AcyI	GRCGYC	2 cut(s)	240, 382
AfaI	GTAC	2 cut(s)	208, 347
AfiI	CCNNNNNNNGG	2 cut(s)	224, 458
AgsI	TTSAA	1 cut(s)	437
AhdI	GACNNNNNGTC	1 cut(s)	239
AleI	CACNNNNGTG	1 cut(s)	534
AloI	GAACNNNNNNTCC	2 cut(s)	611, 643
AluBI	AGCT	6 cut(s)	68, 191, 311, 542, 557, 658
AluI	AGCT	6 cut(s)	68, 191, 311, 542, 557, 658
Alw21I	GWGCWC	1 cut(s)	544
Alw26I	GTCTC	2 cut(s)	311, 442
AoxI	GGCC	1 cut(s)	202
ApeKI	GCWGC	1 cut(s)	68
ApoI	RAATTY	1 cut(s)	19
ArsI	GACNNNNNNTTYG	2 cut(s)	392, 424
AspLEI	GCGC	1 cut(s)	431
AspS9I	GGNCC	1 cut(s)	142
AsuC2I	CCSGG	1 cut(s)	219
AsuHPI	GGTGA	1 cut(s)	324
AvaII	GGWCC	1 cut(s)	142
BanII	GRGCYC	1 cut(s)	544
BarI	GAAGNNNNNNTAC	2 cut(s)	329, 361
BauI	CACGAG	1 cut(s)	530
BbsI	GAAGAC	2 cut(s)	129, 555
Bbv12I	GWGCWC	1 cut(s)	544
BbvI	GCAGC	1 cut(s)	55
BccI	CCATC	2 cut(s)	99, 244
BceAI	ACGGC	2 cut(s)	189, 340
BcgI	CGANNNNNNTGC	2 cut(s)	227, 261
BciVI	GTATCC	1 cut(s)	525
BcnI	CCSGG	1 cut(s)	219
BcoDI	GTCTC	2 cut(s)	311, 442
BfuAI	ACCTGC	1 cut(s)	460
BfuI	GTATCC	1 cut(s)	525
BisI	GCNGC	1 cut(s)	69
BlsI	GCNGC	1 cut(s)	70
BmcAI	AGTACT	1 cut(s)	347
Bme1390I	CCNGG	1 cut(s)	219
Bme18I	GGWCC	1 cut(s)	142
BmeRI	GACNNNNNGTC	1 cut(s)	239
BmgT120I	GGNCC	1 cut(s)	142
BmiI	GGNNCC	3 cut(s)	143, 328, 585
BmrFI	CCNGG	1 cut(s)	219
BpiI	GAAGAC	2 cut(s)	129, 555
BpuMI	CCSGG	1 cut(s)	219
BsaHI	GRCGYC	2 cut(s)	240, 382
BsaI	GGTCTC	1 cut(s)	442
BsaJI	CCNNGG	3 cut(s)	137, 145, 217
BsaWI	WCCGGW	2 cut(s)	439, 586
BsaXI	ACNNNNNCTCC	2 cut(s)	611, 641
Bsc4I	CCNNNNNNNGG	2 cut(s)	224, 458
BseDI	CCNNGG	3 cut(s)	137, 145, 217
BseGI	GGATG	1 cut(s)	110
BseLI	CCNNNNNNNGG	2 cut(s)	224, 458
BseRI	GAGGAG	3 cut(s)	319, 470, 629
BseXI	GCAGC	1 cut(s)	55
BshFI	GGCC	1 cut(s)	204
BsiHKAI	GWGCWC	1 cut(s)	544
BsiSI	CCGG	3 cut(s)	219, 440, 587
BslFI	GGGAC	3 cut(s)	122, 155, 200
BslI	CCNNNNNNNGG	2 cut(s)	224, 458
BsmAI	GTCTC	2 cut(s)	311, 442
BsmFI	GGGAC	3 cut(s)	122, 155, 200
BsnI	GGCC	1 cut(s)	204
Bso31I	GGTCTC	1 cut(s)	442
Bsp1286I	GDGCHC	1 cut(s)	544
Bsp19I	CCATGG	1 cut(s)	137
BspACI	CCGC	3 cut(s)	102, 228, 602
BspANI	GGCC	1 cut(s)	204
BspLI	GGNNCC	3 cut(s)	143, 328, 585
BspMI	ACCTGC	1 cut(s)	460
BspQI	GCTCTTC	1 cut(s)	145
BspTNI	GGTCTC	1 cut(s)	442
BssECI	CCNNGG	3 cut(s)	137, 145, 217
BssNI	GRCGYC	2 cut(s)	240, 382
BssSI	CACGAG	1 cut(s)	530
BssT1I	CCWWGG	2 cut(s)	137, 145
Bst2BI	CACGAG	1 cut(s)	530
Bst6I	CTCTTC	2 cut(s)	145, 190
BstACI	GRCGYC	2 cut(s)	240, 382
BstC8I	GCNNGC	2 cut(s)	256, 660
BstDSI	CCRYGG	1 cut(s)	137
BstF5I	GGATG	1 cut(s)	110
BstHHI	GCGC	1 cut(s)	431
BstMAI	GTCTC	2 cut(s)	311, 442
BstSCI	CCNGG	1 cut(s)	217
BstV1I	GCAGC	1 cut(s)	55
BstV2I	GAAGAC	2 cut(s)	129, 555
BstXI	CCANNNNNNTGG	1 cut(s)	536
BsuI	GTATCC	1 cut(s)	525
BsuRI	GGCC	1 cut(s)	204
BtgI	CCRYGG	1 cut(s)	137
BtgZI	GCGATG	1 cut(s)	263
BtsCI	GGATG	1 cut(s)	110
BveI	ACCTGC	1 cut(s)	460
Cac8I	GCNNGC	2 cut(s)	256, 660
CfoI	GCGC	1 cut(s)	431
Cfr13I	GGNCC	1 cut(s)	142
CseI	GACGC	1 cut(s)	371
Csp6I	GTAC	2 cut(s)	207, 346
CviAII	CATG	4 cut(s)	138, 456, 469, 473
CviQI	GTAC	2 cut(s)	207, 346
DraI	TTTAAA	1 cut(s)	598
DriI	GACNNNNNGTC	1 cut(s)	239
EaeI	YGGCCR	1 cut(s)	202
Eam1104I	CTCTTC	2 cut(s)	145, 190
Eam1105I	GACNNNNNGTC	1 cut(s)	239
EarI	CTCTTC	2 cut(s)	145, 190
EciI	GGCGGA	2 cut(s)	117, 243
Ecl136II	GAGCTC	1 cut(s)	542
Eco130I	CCWWGG	2 cut(s)	137, 145
Eco24I	GRGCYC	1 cut(s)	544
Eco31I	GGTCTC	1 cut(s)	442
Eco47I	GGWCC	1 cut(s)	142
Eco53kI	GAGCTC	1 cut(s)	542
Eco57I	CTGAAG	3 cut(s)	27, 81, 171
EcoICRI	GAGCTC	1 cut(s)	542
EcoT14I	CCWWGG	2 cut(s)	137, 145
EcoT22I	ATGCAT	1 cut(s)	474
EcoT38I	GRGCYC	1 cut(s)	544
ErhI	CCWWGG	2 cut(s)	137, 145
FaeI	CATG	4 cut(s)	141, 459, 472, 476
FaiI	YATR	8 cut(s)	30, 139, 417, 457, 470, 474, 503, 512
FalI	AAGNNNNNCTT	2 cut(s)	642, 674
FaqI	GGGAC	3 cut(s)	122, 155, 200
FatI	CATG	4 cut(s)	137, 455, 468, 472
Fnu4HI	GCNGC	1 cut(s)	69
FokI	GGATG	1 cut(s)	117
FriOI	GRGCYC	1 cut(s)	544
Fsp4HI	GCNGC	1 cut(s)	69
FspI	TGCGCA	1 cut(s)	430
GlaI	GCGC	1 cut(s)	430
GluI	GCNGC	1 cut(s)	69
HaeIII	GGCC	1 cut(s)	204
HapII	CCGG	3 cut(s)	219, 440, 587
HgaI	GACGC	1 cut(s)	371
HhaI	GCGC	1 cut(s)	431
Hin1I	GRCGYC	2 cut(s)	240, 382
Hin1II	CATG	4 cut(s)	141, 459, 472, 476
Hin6I	GCGC	1 cut(s)	429
HinP1I	GCGC	1 cut(s)	429
HindIII	AAGCTT	1 cut(s)	656
HinfI	GANTC	2 cut(s)	182, 626
HpaII	CCGG	3 cut(s)	219, 440, 587
HphI	GGTGA	1 cut(s)	324
Hpy188I	TCNGA	2 cut(s)	292, 519
Hpy188III	TCNNGA	3 cut(s)	59, 179, 358
Hpy99I	CGWCG	2 cut(s)	242, 245
HpyAV	CCTTC	3 cut(s)	92, 331, 355
HpyCH4IV	ACGT	2 cut(s)	240, 265
HpyCH4V	TGCA	3 cut(s)	95, 455, 472
HpySE526I	ACGT	2 cut(s)	240, 265
Hsp92I	GRCGYC	2 cut(s)	240, 382
Hsp92II	CATG	4 cut(s)	141, 459, 472, 476
HspAI	GCGC	1 cut(s)	429
LguI	GCTCTTC	1 cut(s)	145
LmnI	GCTCC	3 cut(s)	332, 539, 547
LpnPI	CCDG	9 cut(s)	72, 92, 232, 273, 453, 465, 501, 600, 636
Lsp1109I	GCAGC	1 cut(s)	55
MaeII	ACGT	2 cut(s)	240, 265
MaeIII	GTNAC	1 cut(s)	130
MfeI	CAATTG	1 cut(s)	432
MhlI	GDGCHC	1 cut(s)	544
MluCI	AATT	3 cut(s)	19, 392, 432
MlyI	GAGTC	2 cut(s)	176, 620
MmeI	TCCRAC	1 cut(s)	256
MnlI	CCTC	9 cut(s)	171, 207, 224, 340, 413, 491, 526, 607, 657
Mph1103I	ATGCAT	1 cut(s)	474
MseI	TTAA	2 cut(s)	597, 678
MslI	CAYNNNNRTG	1 cut(s)	534
MspI	CCGG	3 cut(s)	219, 440, 587
MspR9I	CCNGG	1 cut(s)	219
MunI	CAATTG	1 cut(s)	432
NciI	CCSGG	1 cut(s)	219
NcoI	CCATGG	1 cut(s)	137
NlaIII	CATG	4 cut(s)	141, 459, 472, 476
NlaIV	GGNNCC	3 cut(s)	143, 328, 585
NsbI	TGCGCA	1 cut(s)	430
NsiI	ATGCAT	1 cut(s)	474
OliI	CACNNNNGTG	1 cut(s)	534
PciSI	GCTCTTC	1 cut(s)	145
PkrI	GCNGC	1 cut(s)	70
PleI	GAGTC	2 cut(s)	176, 620
PpsI	GAGTC	2 cut(s)	176, 620
PsiI	TTATAA	1 cut(s)	503
Psp124BI	GAGCTC	1 cut(s)	544
Psp1406I	AACGTT	1 cut(s)	265
PspN4I	GGNNCC	3 cut(s)	143, 328, 585
PspPI	GGNCC	1 cut(s)	142
PsrI	GAACNNNNNNTAC	2 cut(s)	338, 370
RsaI	GTAC	2 cut(s)	208, 347
RsaNI	GTAC	2 cut(s)	207, 346
RseI	CAYNNNNRTG	1 cut(s)	534
SacI	GAGCTC	1 cut(s)	544
SapI	GCTCTTC	1 cut(s)	145
SaqAI	TTAA	2 cut(s)	597, 678
SatI	GCNGC	1 cut(s)	69
Sau96I	GGNCC	1 cut(s)	142
ScaI	AGTACT	1 cut(s)	347
SchI	GAGTC	2 cut(s)	176, 620
ScrFI	CCNGG	1 cut(s)	219
SduI	GDGCHC	1 cut(s)	544
SinI	GGWCC	1 cut(s)	142
SmiMI	CAYNNNNRTG	1 cut(s)	534
Sse9I	AATT	3 cut(s)	19, 392, 432
SsiI	CCGC	3 cut(s)	102, 228, 602
SstI	GAGCTC	1 cut(s)	544
StyD4I	CCNGG	1 cut(s)	217
StyI	CCWWGG	2 cut(s)	137, 145
TaiI	ACGT	2 cut(s)	243, 268
TaqI	TCGA	3 cut(s)	23, 180, 411
TaqII	GACCGA	1 cut(s)	539
TasI	AATT	3 cut(s)	19, 392, 432
TatI	WGTACW	1 cut(s)	345
Tru1I	TTAA	2 cut(s)	597, 678
Tru9I	TTAA	2 cut(s)	597, 678
TseI	GCWGC	1 cut(s)	68
TspDTI	ATGAA	2 cut(s)	161, 489
TspGWI	ACGGA	2 cut(s)	507, 598
VpaK11BI	GGWCC	1 cut(s)	142
XapI	RAATTY	1 cut(s)	19
ZraI	GACGTC	1 cut(s)	241
ZrmI	AGTACT	1 cut(s)	347
Zsp2I	ATGCAT	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.