Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0005015

Physical Location & Seq

Genomic Coordinates Forward (+)

227884 .. 230201

Gene Structure 2318 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG002900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGTCCTCTCAATTTTCATCATCATTGATTCGGACTAATAGGAATCTGAATCTGCTGCCTTTGATTCCTCCCACAAGTAGAACAAGGGTCTTCCTCCAACTGAGAATGATGATGACGAAGAAGAGAGAGCAAGGAGACCCCGAGAGTCAGAGTCGGGAGAACCACCAACCTCGTGGTGTTAACGAGCTTCAGCAACTCTTGCACAGCGACTCTACAGGTGGTGCTGGTGGTGGTGATTGGGACAAGTGCTGGGAGCAAGGTCTCACCCCTTGGGATCTAGGACAGCCAACTCCTGTTATTGCTCATCTTCATAGGTTGGGAGCCCTTCCCAAGGGCAGGGCTCTTGTCCCTGGATGCGGCACTGGTTACGATGTTGTAGAGATTGCATGCCCTGAACGCCATGTTACCGGTTTAGACATTTCACACAATGCCATTAACAAGGCCCTCCAGTTGTTTTCCTCACTACCCAATGCAATGCATTTTACCTTCTTAAAGGTGGACTTTTTTACCTGGCATCCAACTGAATTGTTTGATCTCATATTTGATTATACGTTCTTCTGTGCTATTGAACCAGACATGAGATCAGCATGGGCACAAAAGATGAGGGACATCTTAAAACCAGATGGAGAGCTCATAACGCTAATGTTTCCAGTAATAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008168 GO:0008172 GO:0008757 GO:0009056 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0016020 GO:0016143 GO:0016145 GO:0016740 GO:0016741 GO:0018708 GO:0019748 GO:0019757 GO:0019759 GO:0019760 GO:0019762 GO:0031967 GO:0031975 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044248 GO:0044273 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0071704 GO:0071944 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPMT

Protein Analysis

220

Amino Acids

24.84

Weight (kDa)

6.44

Isoelectric Point (pI)

54.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPMT	PF05724	78 - 217	1.9e-39	Thiopurine S-methyltransferase (TPMT)
Methyltransf_31	PF13847	117 - 213	2.4e-10	Methyltransferase domain
Methyltransf_11	PF08241	117 - 212	2.2e-08	Methyltransferase domain
Methyltransf_25	PF13649	118 - 209	8.6e-12	Methyltransferase domain
Methyltransf_12	PF08242	118 - 211	1.3e-10	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43910 AT2G43910 AT2G43910 AT2G43920 AT2G43920 AT2G43920 AT2G43920 AT2G43920 AT2G43920 AT2G43940
fragaria_vesca	FvH4_1g00240 FvH4_1g00240 FvH4_1g00240
malus_domestica	MD15G1143500.v1.1
prunus_persica	Prupe.7G269600_v2.0.a1 Prupe.7G269600_v2.0.a1 Prupe.7G269600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0084541
rosa_laevigata	RLG00000015625
rosa_multiflora	Rmu_sc0009647.1_g000002
rosa_roxburghii	Rroxscaffold_2G00155980
rosa_rugosa	Rorug01G0454800 Rorug01G0454900 Rorug01G0455000 Rorug01G0455100
rosa_samantha	Rh2AG002900 Rh2BG002500 Rh2CG003000 Rh2DG003000
rosa_wichuraiana	Rw2G000260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	357
AclWI	GGATC	1 cut(s)	282
AcuI	CTGAAG	1 cut(s)	173
AfiI	CCNNNNNNNGG	3 cut(s)	331, 336, 356
AgeI	ACCGGT	1 cut(s)	407
AgsI	TTSAA	1 cut(s)	569
AjnI	CCWGG	2 cut(s)	349, 509
AluBI	AGCT	2 cut(s)	187, 631
AluI	AGCT	2 cut(s)	187, 631
Alw21I	GWGCWC	1 cut(s)	633
Alw26I	GTCTC	2 cut(s)	129, 266
AlwI	GGATC	1 cut(s)	282
Ama87I	CYCGRG	1 cut(s)	140
AoxI	GGCC	1 cut(s)	441
ApeKI	GCWGC	1 cut(s)	55
AsiGI	ACCGGT	1 cut(s)	407
AspS9I	GGNCC	1 cut(s)	442
AsuHPI	GGTGA	2 cut(s)	245, 256
AvaI	CYCGRG	1 cut(s)	140
BaeGI	GKGCMC	1 cut(s)	595
BanII	GRGCYC	3 cut(s)	325, 343, 633
BauI	CACGAG	1 cut(s)	171
BbsI	GAAGAC	1 cut(s)	82
Bbv12I	GWGCWC	1 cut(s)	633
BbvI	GCAGC	1 cut(s)	42
BccI	CCATC	1 cut(s)	617
BciT130I	CCWGG	2 cut(s)	351, 511
BcoDI	GTCTC	2 cut(s)	129, 266
BfaI	CTAG	1 cut(s)	278
BfmI	CTRYAG	1 cut(s)	213
BisI	GCNGC	2 cut(s)	56, 358
BlsI	GCNGC	2 cut(s)	57, 359
Bme1390I	CCNGG	2 cut(s)	351, 511
BmeT110I	CYCGRG	1 cut(s)	140
BmgT120I	GGNCC	1 cut(s)	442
BmiI	GGNNCC	1 cut(s)	322
BmrFI	CCNGG	2 cut(s)	351, 511
BmsI	GCATC	2 cut(s)	344, 523
BpiI	GAAGAC	1 cut(s)	82
BpmI	CTGGAG	1 cut(s)	431
BsaI	GGTCTC	2 cut(s)	129, 266
BsaJI	CCNNGG	3 cut(s)	269, 330, 349
BsaWI	WCCGGW	1 cut(s)	407
Bsc4I	CCNNNNNNNGG	3 cut(s)	331, 336, 356
Bse118I	RCCGGY	1 cut(s)	407
Bse1I	ACTGG	3 cut(s)	367, 448, 650
Bse3DI	GCAATG	1 cut(s)	480
BseBI	CCWGG	2 cut(s)	351, 511
BseDI	CCNNGG	3 cut(s)	269, 330, 349
BseGI	GGATG	2 cut(s)	359, 514
BseLI	CCNNNNNNNGG	3 cut(s)	331, 336, 356
BseMI	GCAATG	1 cut(s)	480
BseMII	CTCAG	1 cut(s)	92
BseNI	ACTGG	3 cut(s)	367, 448, 650
BseSI	GKGCMC	1 cut(s)	595
BseXI	GCAGC	1 cut(s)	42
BseYI	CCCAGC	1 cut(s)	249
BshFI	GGCC	1 cut(s)	443
BshTI	ACCGGT	1 cut(s)	407
BsiHKAI	GWGCWC	1 cut(s)	633
BsiHKCI	CYCGRG	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	408
BslFI	GGGAC	3 cut(s)	254, 332, 620
BslI	CCNNNNNNNGG	3 cut(s)	331, 336, 356
BsmAI	GTCTC	2 cut(s)	129, 266
BsmFI	GGGAC	3 cut(s)	254, 332, 620
BsnI	GGCC	1 cut(s)	443
Bso31I	GGTCTC	2 cut(s)	129, 266
BsoBI	CYCGRG	1 cut(s)	140
Bsp1286I	GDGCHC	4 cut(s)	325, 343, 595, 633
Bsp143I	GATC	3 cut(s)	274, 532, 581
BspACI	CCGC	1 cut(s)	357
BspANI	GGCC	1 cut(s)	443
BspCNI	CTCAG	1 cut(s)	93
BspLI	GGNNCC	1 cut(s)	322
BspPI	GGATC	1 cut(s)	282
BspTNI	GGTCTC	2 cut(s)	129, 266
BsrDI	GCAATG	1 cut(s)	480
BsrFI	RCCGGY	1 cut(s)	407
BsrI	ACTGG	3 cut(s)	367, 448, 650
BssAI	RCCGGY	1 cut(s)	407
BssECI	CCNNGG	3 cut(s)	269, 330, 349
BssMI	GATC	3 cut(s)	274, 532, 581
BssSI	CACGAG	1 cut(s)	171
BssT1I	CCWWGG	2 cut(s)	269, 330
Bst2BI	CACGAG	1 cut(s)	171
Bst2UI	CCWGG	2 cut(s)	351, 511
Bst6I	CTCTTC	1 cut(s)	116
BstAPI	GCANNNNNTGC	1 cut(s)	199
BstC8I	GCNNGC	1 cut(s)	388
BstDEI	CTNAG	1 cut(s)	101
BstENI	CCTNNNNNAGG	1 cut(s)	329
BstF5I	GGATG	2 cut(s)	359, 514
BstKTI	GATC	3 cut(s)	277, 535, 584
BstMAI	GTCTC	2 cut(s)	129, 266
BstMBI	GATC	3 cut(s)	274, 532, 581
BstMWI	GCNNNNNNNGC	3 cut(s)	199, 396, 637
BstNI	CCWGG	2 cut(s)	351, 511
BstNSI	RCATGY	1 cut(s)	390
BstSCI	CCNGG	2 cut(s)	349, 509
BstSFI	CTRYAG	1 cut(s)	213
BstSLI	GKGCMC	1 cut(s)	595
BstV1I	GCAGC	1 cut(s)	42
BstV2I	GAAGAC	1 cut(s)	82
BstX2I	RGATCY	1 cut(s)	274
BstXI	CCANNNNNNTGG	1 cut(s)	173
BstYI	RGATCY	1 cut(s)	274
BsuRI	GGCC	1 cut(s)	443
BtsCI	GGATG	2 cut(s)	359, 514
BtsIMutI	CAGTG	1 cut(s)	360
Cac8I	GCNNGC	1 cut(s)	388
Cfr10I	RCCGGY	1 cut(s)	407
Cfr13I	GGNCC	1 cut(s)	442
CspAI	ACCGGT	1 cut(s)	407
CviAII	CATG	4 cut(s)	387, 401, 577, 588
CviJI	RGCY	6 cut(s)	187, 286, 323, 341, 443, 631
CviKI_1	RGCY	6 cut(s)	187, 286, 323, 341, 443, 631
DdeI	CTNAG	1 cut(s)	101
DpnI	GATC	3 cut(s)	276, 534, 583
DpnII	GATC	3 cut(s)	274, 532, 581
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
Ecl136II	GAGCTC	1 cut(s)	631
Eco130I	CCWWGG	2 cut(s)	269, 330
Eco24I	GRGCYC	3 cut(s)	325, 343, 633
Eco31I	GGTCTC	2 cut(s)	129, 266
Eco53kI	GAGCTC	1 cut(s)	631
Eco57I	CTGAAG	1 cut(s)	173
Eco88I	CYCGRG	1 cut(s)	140
EcoICRI	GAGCTC	1 cut(s)	631
EcoNI	CCTNNNNNAGG	1 cut(s)	329
EcoO109I	RGGNCCY	1 cut(s)	442
EcoRII	CCWGG	2 cut(s)	349, 509
EcoT14I	CCWWGG	2 cut(s)	269, 330
EcoT22I	ATGCAT	1 cut(s)	480
EcoT38I	GRGCYC	3 cut(s)	325, 343, 633
ErhI	CCWWGG	2 cut(s)	269, 330
FaeI	CATG	4 cut(s)	390, 404, 580, 591
FaiI	YATR	8 cut(s)	312, 388, 402, 539, 549, 578, 589, 635
FalI	AAGNNNNNCTT	2 cut(s)	485, 517
FaqI	GGGAC	3 cut(s)	254, 332, 620
FatI	CATG	4 cut(s)	386, 400, 576, 587
Fnu4HI	GCNGC	2 cut(s)	56, 358
FokI	GGATG	2 cut(s)	366, 501
FriOI	GRGCYC	3 cut(s)	325, 343, 633
Fsp4HI	GCNGC	2 cut(s)	56, 358
FspBI	CTAG	1 cut(s)	278
GluI	GCNGC	2 cut(s)	56, 358
GsaI	CCCAGC	1 cut(s)	253
GsuI	CTGGAG	1 cut(s)	431
HaeIII	GGCC	1 cut(s)	443
HapII	CCGG	1 cut(s)	408
Hin1II	CATG	4 cut(s)	390, 404, 580, 591
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HinfI	GANTC	7 cut(s)	28, 43, 49, 64, 145, 151, 209
HpaI	GTTAAC	1 cut(s)	181
HpaII	CCGG	1 cut(s)	408
HphI	GGTGA	2 cut(s)	245, 256
Hpy166II	GTNNAC	2 cut(s)	181, 499
Hpy188I	TCNGA	3 cut(s)	33, 48, 150
Hpy188III	TCNNGA	1 cut(s)	155
Hpy8I	GTNNAC	2 cut(s)	181, 499
HpyAV	CCTTC	2 cut(s)	335, 496
HpyCH4IV	ACGT	1 cut(s)	551
HpyCH4V	TGCA	4 cut(s)	202, 386, 473, 478
HpyF10VI	GCNNNNNNNGC	3 cut(s)	199, 396, 637
HpyF3I	CTNAG	1 cut(s)	101
HpySE526I	ACGT	1 cut(s)	551
Hsp92II	CATG	4 cut(s)	390, 404, 580, 591
KspAI	GTTAAC	1 cut(s)	181
Kzo9I	GATC	3 cut(s)	274, 532, 581
LmnI	GCTCC	2 cut(s)	253, 320
Lsp1109I	GCAGC	1 cut(s)	42
LweI	GCATC	2 cut(s)	344, 523
MaeI	CTAG	1 cut(s)	278
MaeII	ACGT	1 cut(s)	551
MaeIII	GTNAC	2 cut(s)	365, 403
MalI	GATC	3 cut(s)	276, 534, 583
MboI	GATC	3 cut(s)	274, 532, 581
MboII	GAAGA	5 cut(s)	82, 130, 133, 299, 547
MflI	RGATCY	1 cut(s)	274
MhlI	GDGCHC	4 cut(s)	325, 343, 595, 633
MluCI	AATT	3 cut(s)	11, 524, 658
MlyI	GAGTC	3 cut(s)	154, 160, 203
MmeI	TCCRAC	2 cut(s)	121, 542
MnlI	CCTC	7 cut(s)	16, 78, 104, 180, 455, 469, 597
Mph1103I	ATGCAT	1 cut(s)	480
MseI	TTAA	5 cut(s)	180, 435, 491, 614, 661
MspI	CCGG	1 cut(s)	408
MspR9I	CCNGG	2 cut(s)	351, 511
MvaI	CCWGG	2 cut(s)	351, 511
MwoI	GCNNNNNNNGC	3 cut(s)	199, 396, 637
NdeII	GATC	3 cut(s)	274, 532, 581
NlaIII	CATG	4 cut(s)	390, 404, 580, 591
NlaIV	GGNNCC	1 cut(s)	322
NsiI	ATGCAT	1 cut(s)	480
NspI	RCATGY	1 cut(s)	390
PaeI	GCATGC	1 cut(s)	390
PfeI	GAWTC	4 cut(s)	28, 43, 49, 64
PinAI	ACCGGT	1 cut(s)	407
PkrI	GCNGC	2 cut(s)	57, 359
PleI	GAGTC	3 cut(s)	153, 159, 203
PpsI	GAGTC	3 cut(s)	153, 159, 203
Psp124BI	GAGCTC	1 cut(s)	633
Psp6I	CCWGG	2 cut(s)	349, 509
PspFI	CCCAGC	1 cut(s)	249
PspGI	CCWGG	2 cut(s)	349, 509
PspN4I	GGNNCC	1 cut(s)	322
PspPI	GGNCC	1 cut(s)	442
PsuI	RGATCY	1 cut(s)	274
SacI	GAGCTC	1 cut(s)	633
SaqAI	TTAA	5 cut(s)	180, 435, 491, 614, 661
SatI	GCNGC	2 cut(s)	56, 358
Sau3AI	GATC	3 cut(s)	274, 532, 581
Sau96I	GGNCC	1 cut(s)	442
SchI	GAGTC	3 cut(s)	154, 160, 203
ScrFI	CCNGG	2 cut(s)	351, 511
SduI	GDGCHC	4 cut(s)	325, 343, 595, 633
SfaNI	GCATC	2 cut(s)	344, 523
SfcI	CTRYAG	1 cut(s)	213
SphI	GCATGC	1 cut(s)	390
Sse9I	AATT	3 cut(s)	11, 524, 658
SsiI	CCGC	1 cut(s)	357
SspMI	CTAG	1 cut(s)	278
SstI	GAGCTC	1 cut(s)	633
StyD4I	CCNGG	2 cut(s)	349, 509
StyI	CCWWGG	2 cut(s)	269, 330
TaiI	ACGT	1 cut(s)	554
TasI	AATT	3 cut(s)	11, 524, 658
TauI	GCSGC	1 cut(s)	360
TfiI	GAWTC	4 cut(s)	28, 43, 49, 64
Tru1I	TTAA	5 cut(s)	180, 435, 491, 614, 661
Tru9I	TTAA	5 cut(s)	180, 435, 491, 614, 661
TscAI	CASTG	1 cut(s)	367
TseI	GCWGC	1 cut(s)	55
TspDTI	ATGAA	2 cut(s)	6, 299
TspRI	CASTG	1 cut(s)	367
XagI	CCTNNNNNAGG	1 cut(s)	329
XceI	RCATGY	1 cut(s)	390
XcmI	CCANNNNNNNNNTGG	1 cut(s)	170
XspI	CTAG	1 cut(s)	278
Zsp2I	ATGCAT	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.