Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005015

Physical Location & Seq

Genomic Coordinates Reverse (-)

18195677 .. 18197767

Gene Structure 2091 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G43940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGAAAACGCCGGTAAAGCTACGTCACTCCAATCGTCCCGTGATTTATTCCACCGGTTGATGAGCGAGAATTCTTCTGGTGGTTGGGAGAAGAGTTGGGAAGCAGGAGCAACTCCATGGGACTTAGGAAAACCAACTCCGGTTATTGCGCATCTCGTCGAGACTGGTTCTTTGCCTAATGGCAGAGCTCTAGTTCCTGGTTGTGGAACTGGTTATGATGTGGTGGCAATGGCCTCCCCTGATCGTCATGTTGTTGGATTGGATATATCTAAAACTGCGGTTGAGCGATCAACAAAGAAGTTTTCTACATTGCCAAATGCAAAATACTTCTCCTTCTTGAGTGAAGACTTTTTCACTTGGGAGCCAGCTGAAAAATTCGATCTCATTTTCGATTATACCTTCTTCTGTGCCTTTGAACCGGGCGTGAGACCTCTATGGGCACAACGAATGGAAAAACTTCTGAAACCTGGTGGAGAGCTTATAACATTGATGTTTCCTATTGATGAACGTTCTGGAGGTCCTCCTTATGAAGTATCTGTGTCTGAATACGAGAAGGTTCTGATTCCACTGGGGTTTGAGGCAATCTCCATTGTTGATAACGAACTTGCTGTAGGACCACGCAAGGGAATGGAGAAGCTTGGAAGATGGAAGAAATCTTCCACATTTCACTCCACCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008168 GO:0008172 GO:0008757 GO:0009056 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0016020 GO:0016143 GO:0016145 GO:0016740 GO:0016741 GO:0018708 GO:0019748 GO:0019757 GO:0019759 GO:0019760 GO:0019762 GO:0031967 GO:0031975 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044248 GO:0044273 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0071704 GO:0071944 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPMT

Protein Analysis

226

Amino Acids

25.04

Weight (kDa)

5.66

Isoelectric Point (pI)

34.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPMT	PF05724	26 - 193	1.4e-45	Thiopurine S-methyltransferase (TPMT)
Methyltransf_31	PF13847	63 - 162	7.8e-12	Methyltransferase domain
Methyltransf_11	PF08241	66 - 161	5.4e-09	Methyltransferase domain
Methyltransf_25	PF13649	67 - 158	8.6e-12	Methyltransferase domain
Methyltransf_12	PF08242	67 - 160	1.7e-10	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43910 AT2G43910 AT2G43910 AT2G43920 AT2G43920 AT2G43920 AT2G43920 AT2G43920 AT2G43920 AT2G43940
fragaria_vesca	FvH4_1g00240 FvH4_1g00240 FvH4_1g00240
malus_domestica	MD15G1143500.v1.1
prunus_persica	Prupe.7G269600_v2.0.a1 Prupe.7G269600_v2.0.a1 Prupe.7G269600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0084541
rosa_laevigata	RLG00000015625
rosa_multiflora	Rmu_sc0009647.1_g000002
rosa_roxburghii	Rroxscaffold_2G00155980
rosa_rugosa	Rorug01G0454800 Rorug01G0454900 Rorug01G0455000 Rorug01G0455100
rosa_samantha	Rh2AG002900 Rh2BG002500 Rh2CG003000 Rh2DG003000
rosa_wichuraiana	Rw2G000260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	482
Acc16I	TGCGCA	1 cut(s)	150
AciI	CCGC	1 cut(s)	278
AclI	AACGTT	1 cut(s)	508
AcsI	RAATTY	2 cut(s)	70, 374
AdeI	CACNNNGTG	1 cut(s)	678
AfiI	CCNNNNNNNGG	2 cut(s)	203, 623
AgeI	ACCGGT	1 cut(s)	54
AgsI	TTSAA	1 cut(s)	416
AjnI	CCWGG	2 cut(s)	196, 466
AluBI	AGCT	5 cut(s)	20, 188, 368, 478, 637
AluI	AGCT	5 cut(s)	20, 188, 368, 478, 637
Alw21I	GWGCWC	1 cut(s)	190
Alw26I	GTCTC	2 cut(s)	155, 421
AoxI	GGCC	1 cut(s)	231
ApoI	RAATTY	2 cut(s)	70, 374
ArsI	GACNNNNNNTTYG	2 cut(s)	154, 186
AsiGI	ACCGGT	1 cut(s)	54
Asp700I	GAANNNNTTC	1 cut(s)	456
AspLEI	GCGC	1 cut(s)	151
AspS9I	GGNCC	2 cut(s)	518, 614
AsuC2I	CCSGG	1 cut(s)	420
AvaII	GGWCC	2 cut(s)	518, 614
BaeGI	GKGCMC	1 cut(s)	442
BanII	GRGCYC	1 cut(s)	190
BbsI	GAAGAC	1 cut(s)	351
Bbv12I	GWGCWC	1 cut(s)	190
BccI	CCATC	1 cut(s)	639
BciT130I	CCWGG	2 cut(s)	198, 468
BcnI	CCSGG	1 cut(s)	420
BcoDI	GTCTC	2 cut(s)	155, 421
BfaI	CTAG	1 cut(s)	191
BfmI	CTRYAG	1 cut(s)	609
Bme1390I	CCNGG	3 cut(s)	198, 420, 468
Bme18I	GGWCC	2 cut(s)	518, 614
BmgT120I	GGNCC	2 cut(s)	518, 614
BmiI	GGNNCC	1 cut(s)	363
BmrFI	CCNGG	3 cut(s)	198, 420, 468
BmrI	ACTGGG	1 cut(s)	578
BmsI	GCATC	1 cut(s)	160
BmuI	ACTGGG	1 cut(s)	578
BpiI	GAAGAC	1 cut(s)	351
BplI	GAGNNNNNCTC	2 cut(s)	569, 601
BpmI	CTGGAG	1 cut(s)	534
BpuEI	CTTGAG	1 cut(s)	358
BpuMI	CCSGG	1 cut(s)	420
BsaI	GGTCTC	1 cut(s)	421
BsaJI	CCNNGG	1 cut(s)	116
BsaWI	WCCGGW	2 cut(s)	54, 139
Bsc4I	CCNNNNNNNGG	2 cut(s)	203, 623
Bse118I	RCCGGY	2 cut(s)	11, 54
Bse1I	ACTGG	3 cut(s)	169, 214, 573
Bse3DI	GCAATG	2 cut(s)	234, 308
BseBI	CCWGG	2 cut(s)	198, 468
BseDI	CCNNGG	1 cut(s)	116
BseLI	CCNNNNNNNGG	2 cut(s)	203, 623
BseMI	GCAATG	2 cut(s)	234, 308
BseNI	ACTGG	3 cut(s)	169, 214, 573
BseSI	GKGCMC	1 cut(s)	442
BshFI	GGCC	1 cut(s)	233
BshTI	ACCGGT	1 cut(s)	54
BsiHKAI	GWGCWC	1 cut(s)	190
BsiSI	CCGG	4 cut(s)	12, 55, 140, 419
BslFI	GGGAC	2 cut(s)	22, 134
BslI	CCNNNNNNNGG	2 cut(s)	203, 623
BsmAI	GTCTC	2 cut(s)	155, 421
BsmFI	GGGAC	2 cut(s)	22, 134
BsnI	GGCC	1 cut(s)	233
Bso31I	GGTCTC	1 cut(s)	421
Bsp1286I	GDGCHC	2 cut(s)	190, 442
Bsp143I	GATC	3 cut(s)	241, 287, 379
Bsp19I	CCATGG	1 cut(s)	116
BspACI	CCGC	1 cut(s)	278
BspANI	GGCC	1 cut(s)	233
BspLI	GGNNCC	1 cut(s)	363
BspTNI	GGTCTC	1 cut(s)	421
BsrDI	GCAATG	2 cut(s)	234, 308
BsrFI	RCCGGY	2 cut(s)	11, 54
BsrI	ACTGG	3 cut(s)	169, 214, 573
BssAI	RCCGGY	2 cut(s)	11, 54
BssECI	CCNNGG	1 cut(s)	116
BssMI	GATC	3 cut(s)	241, 287, 379
BssT1I	CCWWGG	1 cut(s)	116
Bst2UI	CCWGG	2 cut(s)	198, 468
Bst6I	CTCTTC	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	366
BstDEI	CTNAG	1 cut(s)	124
BstDSI	CCRYGG	1 cut(s)	116
BstHHI	GCGC	1 cut(s)	151
BstKTI	GATC	3 cut(s)	244, 290, 382
BstMAI	GTCTC	2 cut(s)	155, 421
BstMBI	GATC	3 cut(s)	241, 287, 379
BstMWI	GCNNNNNNNGC	1 cut(s)	17
BstNI	CCWGG	2 cut(s)	198, 468
BstSCI	CCNGG	3 cut(s)	196, 418, 466
BstSFI	CTRYAG	1 cut(s)	609
BstSLI	GKGCMC	1 cut(s)	442
BstV2I	GAAGAC	1 cut(s)	351
BsuRI	GGCC	1 cut(s)	233
BtgI	CCRYGG	1 cut(s)	116
BtsIMutI	CAGTG	1 cut(s)	566
Cac8I	GCNNGC	1 cut(s)	366
CfoI	GCGC	1 cut(s)	151
Cfr10I	RCCGGY	2 cut(s)	11, 54
Cfr13I	GGNCC	2 cut(s)	518, 614
CsiI	ACCWGGT	1 cut(s)	466
CspAI	ACCGGT	1 cut(s)	54
CviAII	CATG	2 cut(s)	117, 248
CviJI	RGCY	7 cut(s)	20, 188, 233, 364, 368, 478, 637
CviKI_1	RGCY	7 cut(s)	20, 188, 233, 364, 368, 478, 637
DdeI	CTNAG	1 cut(s)	124
DpnI	GATC	3 cut(s)	243, 289, 381
DpnII	GATC	3 cut(s)	241, 287, 379
DraIII	CACNNNGTG	1 cut(s)	678
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
Ecl136II	GAGCTC	1 cut(s)	188
Eco130I	CCWWGG	1 cut(s)	116
Eco24I	GRGCYC	1 cut(s)	190
Eco31I	GGTCTC	1 cut(s)	421
Eco47I	GGWCC	2 cut(s)	518, 614
Eco53kI	GAGCTC	1 cut(s)	188
EcoICRI	GAGCTC	1 cut(s)	188
EcoO109I	RGGNCCY	1 cut(s)	518
EcoRI	GAATTC	1 cut(s)	70
EcoRII	CCWGG	2 cut(s)	196, 466
EcoT14I	CCWWGG	1 cut(s)	116
EcoT38I	GRGCYC	1 cut(s)	190
ErhI	CCWWGG	1 cut(s)	116
FaeI	CATG	2 cut(s)	120, 251
FaiI	YATR	8 cut(s)	118, 216, 249, 266, 396, 436, 482, 528
FaqI	GGGAC	2 cut(s)	22, 134
FatI	CATG	2 cut(s)	116, 247
FriOI	GRGCYC	1 cut(s)	190
FspBI	CTAG	1 cut(s)	191
FspI	TGCGCA	1 cut(s)	150
GlaI	GCGC	1 cut(s)	150
GsuI	CTGGAG	1 cut(s)	534
HaeIII	GGCC	1 cut(s)	233
HapII	CCGG	4 cut(s)	12, 55, 140, 419
HhaI	GCGC	1 cut(s)	151
Hin1II	CATG	2 cut(s)	120, 251
Hin6I	GCGC	1 cut(s)	149
HinP1I	GCGC	1 cut(s)	149
HindIII	AAGCTT	1 cut(s)	635
HinfI	GANTC	1 cut(s)	562
HpaII	CCGG	4 cut(s)	12, 55, 140, 419
Hpy188I	TCNGA	3 cut(s)	462, 544, 561
Hpy188III	TCNNGA	3 cut(s)	160, 337, 513
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	3 cut(s)	343, 409, 547
HpyCH4IV	ACGT	2 cut(s)	23, 508
HpyCH4V	TGCA	1 cut(s)	320
HpyF10VI	GCNNNNNNNGC	1 cut(s)	17
HpyF3I	CTNAG	1 cut(s)	124
HpySE526I	ACGT	2 cut(s)	23, 508
Hsp92II	CATG	2 cut(s)	120, 251
HspAI	GCGC	1 cut(s)	149
Kzo9I	GATC	3 cut(s)	241, 287, 379
LmnI	GCTCC	2 cut(s)	107, 361
LweI	GCATC	1 cut(s)	160
MabI	ACCWGGT	1 cut(s)	466
MaeI	CTAG	1 cut(s)	191
MaeII	ACGT	2 cut(s)	23, 508
MaeIII	GTNAC	1 cut(s)	24
MalI	GATC	3 cut(s)	243, 289, 381
MboI	GATC	3 cut(s)	241, 287, 379
MboII	GAAGA	7 cut(s)	66, 103, 356, 394, 648, 654, 661
MhlI	GDGCHC	2 cut(s)	190, 442
MluCI	AATT	2 cut(s)	70, 374
MmeI	TCCRAC	1 cut(s)	235
MnlI	CCTC	5 cut(s)	244, 441, 509, 531, 571
MroXI	GAANNNNTTC	1 cut(s)	456
MspA1I	CMGCKG	1 cut(s)	368
MspI	CCGG	4 cut(s)	12, 55, 140, 419
MspR9I	CCNGG	3 cut(s)	198, 420, 468
MvaI	CCWGG	2 cut(s)	198, 468
MwoI	GCNNNNNNNGC	1 cut(s)	17
NciI	CCSGG	1 cut(s)	420
NcoI	CCATGG	1 cut(s)	116
NdeII	GATC	3 cut(s)	241, 287, 379
NlaIII	CATG	2 cut(s)	120, 251
NlaIV	GGNNCC	1 cut(s)	363
NmuCI	GTSAC	1 cut(s)	24
NsbI	TGCGCA	1 cut(s)	150
PdmI	GAANNNNTTC	1 cut(s)	456
PfeI	GAWTC	1 cut(s)	562
PinAI	ACCGGT	1 cut(s)	54
PpuMI	RGGWCCY	1 cut(s)	518
PsiI	TTATAA	1 cut(s)	482
Psp124BI	GAGCTC	1 cut(s)	190
Psp1406I	AACGTT	1 cut(s)	508
Psp5II	RGGWCCY	1 cut(s)	518
Psp6I	CCWGG	2 cut(s)	196, 466
PspGI	CCWGG	2 cut(s)	196, 466
PspN4I	GGNNCC	1 cut(s)	363
PspPI	GGNCC	2 cut(s)	518, 614
PspPPI	RGGWCCY	1 cut(s)	518
PvuII	CAGCTG	1 cut(s)	368
SacI	GAGCTC	1 cut(s)	190
Sau3AI	GATC	3 cut(s)	241, 287, 379
Sau96I	GGNCC	2 cut(s)	518, 614
ScrFI	CCNGG	3 cut(s)	198, 420, 468
SduI	GDGCHC	2 cut(s)	190, 442
SexAI	ACCWGGT	1 cut(s)	466
SfaNI	GCATC	1 cut(s)	160
SfcI	CTRYAG	1 cut(s)	609
SinI	GGWCC	2 cut(s)	518, 614
SmlI	CTYRAG	1 cut(s)	337
SmoI	CTYRAG	1 cut(s)	337
Sse9I	AATT	2 cut(s)	70, 374
SsiI	CCGC	1 cut(s)	278
SspMI	CTAG	1 cut(s)	191
SstI	GAGCTC	1 cut(s)	190
StyD4I	CCNGG	3 cut(s)	196, 418, 466
StyI	CCWWGG	1 cut(s)	116
TaiI	ACGT	2 cut(s)	26, 511
TaqI	TCGA	3 cut(s)	159, 378, 390
TasI	AATT	2 cut(s)	70, 374
TfiI	GAWTC	1 cut(s)	562
TscAI	CASTG	1 cut(s)	573
TseFI	GTSAC	1 cut(s)	24
Tsp45I	GTSAC	1 cut(s)	24
TspDTI	ATGAA	2 cut(s)	519, 543
TspRI	CASTG	1 cut(s)	573
VpaK11BI	GGWCC	2 cut(s)	518, 614
XapI	RAATTY	2 cut(s)	70, 374
XmnI	GAANNNNTTC	1 cut(s)	456
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.