Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0005015

Physical Location & Seq

Genomic Coordinates Forward (+)

198070 .. 200074

Gene Structure 2005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG003000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGTCCTCTCAATTTTCATCATCATTGATTCGGACTAGGAGGAATCTGAATCTGAATCTGCTGCCTTTGATTCCTCCCACAAGTAGAACAAGGGTCTTCCTCCAACTGAGGATGATGATGACGAAGAAGAGAGAGCAAGGAGACCCCGAGAGTCAGAGCCGGGAGAACCACAAACCTCGTGGTGTTAACGAGCTTCAGCAACTCTTGCACAGCGACTCTACAGGTGGTGCTGGTGGTGGTGATTGGGACAAGTGCTGGGAGCAAGGTCTCACCCCTTGGGATCTAGGACAGCCAACTCCTGTTATTGCTCATCTTCATAGGTTGGGAGCCCTTCCCAAGGGCAGGGCTCTTGTCCCTGGATGCGGCACTGGTTATGATGTTGTAGAGATTGCATGCCCTGAACGCCATGTTACCGGTGTAGACATTTCACACAATGCCATTAACAAAGCCCTCCAGTTGTTTTCATCACTACCCAATGCAATGCATTTTACCTTCTTAAAGGTGGACTTTTTTACCTGGCATCCAACTGAATTGTTTGATCTCATATTTGATTATACGTTCTTCTGTGCTATTGAACCAGACATGAGATCAGCATGGGCACAAAAGATGAGGGACATCTTAAAACCAGATGGAGAGCTCATAACGCTAATGTTTCCAATCAGTGATCATCTTGGTGGACCCCCATACAAAGTGTCTGTTTCAGATTATGAAGAGGTGTTGCATCCCATGGGCTTTAAAGCAATCTCCATCTTGGATAATCATCTGGCTGTCCTACCTCGCAAGGGACGAGAGAAGCTAGGAAGGTGGAAGAGGCCTGCAAGTAAATCCTCTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008168 GO:0008172 GO:0008757 GO:0009056 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0016020 GO:0016143 GO:0016145 GO:0016740 GO:0016741 GO:0018708 GO:0019748 GO:0019757 GO:0019759 GO:0019760 GO:0019762 GO:0031967 GO:0031975 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044248 GO:0044273 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0071704 GO:0071944 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPMT

Protein Analysis

278

Amino Acids

31.34

Weight (kDa)

8.87

Isoelectric Point (pI)

53.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPMT	PF05724	80 - 246	3.7e-45	Thiopurine S-methyltransferase (TPMT)
Methyltransf_31	PF13847	119 - 215	2.2e-10	Methyltransferase domain
Methyltransf_11	PF08241	119 - 214	1.9e-08	Methyltransferase domain
Methyltransf_25	PF13649	120 - 211	6.5e-12	Methyltransferase domain
Methyltransf_12	PF08242	120 - 213	1.4e-10	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43910 AT2G43910 AT2G43910 AT2G43920 AT2G43920 AT2G43920 AT2G43920 AT2G43920 AT2G43920 AT2G43940
fragaria_vesca	FvH4_1g00240 FvH4_1g00240 FvH4_1g00240
malus_domestica	MD15G1143500.v1.1
prunus_persica	Prupe.7G269600_v2.0.a1 Prupe.7G269600_v2.0.a1 Prupe.7G269600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0084541
rosa_laevigata	RLG00000015625
rosa_multiflora	Rmu_sc0009647.1_g000002
rosa_roxburghii	Rroxscaffold_2G00155980
rosa_rugosa	Rorug01G0454800 Rorug01G0454900 Rorug01G0455000 Rorug01G0455100
rosa_samantha	Rh2AG002900 Rh2BG002500 Rh2CG003000 Rh2DG003000
rosa_wichuraiana	Rw2G000260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	420
AciI	CCGC	1 cut(s)	363
AclWI	GGATC	1 cut(s)	288
AcuI	CTGAAG	1 cut(s)	179
AfiI	CCNNNNNNNGG	4 cut(s)	337, 342, 362, 782
AgeI	ACCGGT	1 cut(s)	413
AgsI	TTSAA	1 cut(s)	575
AjnI	CCWGG	2 cut(s)	355, 515
AluBI	AGCT	3 cut(s)	193, 637, 796
AluI	AGCT	3 cut(s)	193, 637, 796
Alw21I	GWGCWC	1 cut(s)	639
Alw26I	GTCTC	2 cut(s)	135, 272
AlwI	GGATC	1 cut(s)	288
Ama87I	CYCGRG	1 cut(s)	146
AoxI	GGCC	1 cut(s)	812
ApeKI	GCWGC	1 cut(s)	61
AsiGI	ACCGGT	1 cut(s)	413
AspS9I	GGNCC	1 cut(s)	677
AsuC2I	CCSGG	1 cut(s)	161
AsuHPI	GGTGA	2 cut(s)	251, 262
AvaI	CYCGRG	1 cut(s)	146
AvaII	GGWCC	1 cut(s)	677
BaeGI	GKGCMC	1 cut(s)	601
BanII	GRGCYC	3 cut(s)	331, 349, 639
BauI	CACGAG	1 cut(s)	177
BbsI	GAAGAC	1 cut(s)	88
Bbv12I	GWGCWC	1 cut(s)	639
BbvI	GCAGC	1 cut(s)	48
BccI	CCATC	2 cut(s)	623, 755
BciT130I	CCWGG	2 cut(s)	357, 517
BclI	TGATCA	1 cut(s)	664
BcnI	CCSGG	1 cut(s)	161
BcoDI	GTCTC	2 cut(s)	135, 272
BfaI	CTAG	3 cut(s)	36, 284, 797
BfmI	CTRYAG	1 cut(s)	219
BisI	GCNGC	2 cut(s)	62, 364
BlsI	GCNGC	2 cut(s)	63, 365
Bme1390I	CCNGG	3 cut(s)	161, 357, 517
Bme18I	GGWCC	1 cut(s)	677
BmeT110I	CYCGRG	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	677
BmiI	GGNNCC	2 cut(s)	328, 679
BmrFI	CCNGG	3 cut(s)	161, 357, 517
BmsI	GCATC	3 cut(s)	350, 529, 730
BpiI	GAAGAC	1 cut(s)	88
BpmI	CTGGAG	1 cut(s)	437
BpuMI	CCSGG	1 cut(s)	161
BsaBI	GATNNNNATC	1 cut(s)	759
BsaI	GGTCTC	2 cut(s)	135, 272
BsaJI	CCNNGG	4 cut(s)	275, 336, 355, 726
BsaWI	WCCGGW	1 cut(s)	413
Bsc4I	CCNNNNNNNGG	4 cut(s)	337, 342, 362, 782
Bse118I	RCCGGY	1 cut(s)	413
Bse1I	ACTGG	2 cut(s)	373, 454
Bse3DI	GCAATG	1 cut(s)	486
Bse8I	GATNNNNATC	1 cut(s)	759
BseBI	CCWGG	2 cut(s)	357, 517
BseDI	CCNNGG	4 cut(s)	275, 336, 355, 726
BseGI	GGATG	4 cut(s)	117, 365, 520, 721
BseJI	GATNNNNATC	1 cut(s)	759
BseLI	CCNNNNNNNGG	4 cut(s)	337, 342, 362, 782
BseMI	GCAATG	1 cut(s)	486
BseMII	CTCAG	1 cut(s)	98
BseNI	ACTGG	2 cut(s)	373, 454
BseSI	GKGCMC	1 cut(s)	601
BseXI	GCAGC	1 cut(s)	48
BseYI	CCCAGC	1 cut(s)	255
BshFI	GGCC	1 cut(s)	814
BshTI	ACCGGT	1 cut(s)	413
BsiHKAI	GWGCWC	1 cut(s)	639
BsiHKCI	CYCGRG	1 cut(s)	146
BsiSI	CCGG	2 cut(s)	160, 414
BslFI	GGGAC	4 cut(s)	260, 338, 626, 798
BslI	CCNNNNNNNGG	4 cut(s)	337, 342, 362, 782
BsmAI	GTCTC	2 cut(s)	135, 272
BsmFI	GGGAC	4 cut(s)	260, 338, 626, 798
BsnI	GGCC	1 cut(s)	814
Bso31I	GGTCTC	2 cut(s)	135, 272
BsoBI	CYCGRG	1 cut(s)	146
Bsp1286I	GDGCHC	4 cut(s)	331, 349, 601, 639
Bsp143I	GATC	4 cut(s)	280, 538, 587, 664
Bsp19I	CCATGG	1 cut(s)	726
BspACI	CCGC	1 cut(s)	363
BspANI	GGCC	1 cut(s)	814
BspCNI	CTCAG	1 cut(s)	99
BspLI	GGNNCC	2 cut(s)	328, 679
BspPI	GGATC	1 cut(s)	288
BspTNI	GGTCTC	2 cut(s)	135, 272
BsrDI	GCAATG	1 cut(s)	486
BsrFI	RCCGGY	1 cut(s)	413
BsrI	ACTGG	2 cut(s)	373, 454
BssAI	RCCGGY	1 cut(s)	413
BssECI	CCNNGG	4 cut(s)	275, 336, 355, 726
BssMI	GATC	4 cut(s)	280, 538, 587, 664
BssSI	CACGAG	1 cut(s)	177
BssT1I	CCWWGG	3 cut(s)	275, 336, 726
Bst2BI	CACGAG	1 cut(s)	177
Bst2UI	CCWGG	2 cut(s)	357, 517
Bst6I	CTCTTC	3 cut(s)	122, 705, 803
BstAPI	GCANNNNNTGC	1 cut(s)	205
BstC8I	GCNNGC	2 cut(s)	394, 816
BstDEI	CTNAG	1 cut(s)	107
BstDSI	CCRYGG	1 cut(s)	726
BstENI	CCTNNNNNAGG	1 cut(s)	335
BstF5I	GGATG	4 cut(s)	117, 365, 520, 721
BstKTI	GATC	4 cut(s)	283, 541, 590, 667
BstMAI	GTCTC	2 cut(s)	135, 272
BstMBI	GATC	4 cut(s)	280, 538, 587, 664
BstMWI	GCNNNNNNNGC	3 cut(s)	205, 402, 643
BstNI	CCWGG	2 cut(s)	357, 517
BstNSI	RCATGY	1 cut(s)	396
BstSCI	CCNGG	3 cut(s)	159, 355, 515
BstSFI	CTRYAG	1 cut(s)	219
BstSLI	GKGCMC	1 cut(s)	601
BstV1I	GCAGC	1 cut(s)	48
BstV2I	GAAGAC	1 cut(s)	88
BstX2I	RGATCY	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	280
BsuRI	GGCC	1 cut(s)	814
BtgI	CCRYGG	1 cut(s)	726
BtsCI	GGATG	4 cut(s)	117, 365, 520, 721
BtsIMutI	CAGTG	2 cut(s)	366, 667
Cac8I	GCNNGC	2 cut(s)	394, 816
Cfr10I	RCCGGY	1 cut(s)	413
Cfr13I	GGNCC	1 cut(s)	677
CspAI	ACCGGT	1 cut(s)	413
CspCI	CAANNNNNGTGG	2 cut(s)	160, 195
CviAII	CATG	5 cut(s)	393, 407, 583, 594, 727
DdeI	CTNAG	1 cut(s)	107
DpnI	GATC	4 cut(s)	282, 540, 589, 666
DpnII	GATC	4 cut(s)	280, 538, 587, 664
DraI	TTTAAA	1 cut(s)	736
Eam1104I	CTCTTC	3 cut(s)	122, 705, 803
EarI	CTCTTC	3 cut(s)	122, 705, 803
Ecl136II	GAGCTC	1 cut(s)	637
Eco130I	CCWWGG	3 cut(s)	275, 336, 726
Eco147I	AGGCCT	1 cut(s)	814
Eco24I	GRGCYC	3 cut(s)	331, 349, 639
Eco31I	GGTCTC	2 cut(s)	135, 272
Eco47I	GGWCC	1 cut(s)	677
Eco53kI	GAGCTC	1 cut(s)	637
Eco57I	CTGAAG	1 cut(s)	179
Eco88I	CYCGRG	1 cut(s)	146
EcoICRI	GAGCTC	1 cut(s)	637
EcoNI	CCTNNNNNAGG	1 cut(s)	335
EcoRII	CCWGG	2 cut(s)	355, 515
EcoT14I	CCWWGG	3 cut(s)	275, 336, 726
EcoT22I	ATGCAT	1 cut(s)	486
EcoT38I	GRGCYC	3 cut(s)	331, 349, 639
ErhI	CCWWGG	3 cut(s)	275, 336, 726
FaeI	CATG	5 cut(s)	396, 410, 586, 597, 730
FalI	AAGNNNNNCTT	2 cut(s)	491, 523
FaqI	GGGAC	4 cut(s)	260, 338, 626, 798
FatI	CATG	5 cut(s)	392, 406, 582, 593, 726
FbaI	TGATCA	1 cut(s)	664
FblI	GTMKAC	1 cut(s)	420
Fnu4HI	GCNGC	2 cut(s)	62, 364
FokI	GGATG	4 cut(s)	124, 372, 507, 708
FriOI	GRGCYC	3 cut(s)	331, 349, 639
Fsp4HI	GCNGC	2 cut(s)	62, 364
FspBI	CTAG	3 cut(s)	36, 284, 797
GluI	GCNGC	2 cut(s)	62, 364
GsaI	CCCAGC	1 cut(s)	259
GsuI	CTGGAG	1 cut(s)	437
HaeIII	GGCC	1 cut(s)	814
HapII	CCGG	2 cut(s)	160, 414
Hin1II	CATG	5 cut(s)	396, 410, 586, 597, 730
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HinfI	GANTC	7 cut(s)	28, 43, 49, 55, 70, 151, 215
HpaI	GTTAAC	1 cut(s)	187
HpaII	CCGG	2 cut(s)	160, 414
HphI	GGTGA	2 cut(s)	251, 262
Hpy166II	GTNNAC	4 cut(s)	187, 421, 505, 677
Hpy188I	TCNGA	5 cut(s)	33, 48, 54, 156, 703
Hpy8I	GTNNAC	4 cut(s)	187, 421, 505, 677
HpyAV	CCTTC	3 cut(s)	341, 502, 795
HpyCH4IV	ACGT	1 cut(s)	557
HpyCH4V	TGCA	6 cut(s)	208, 392, 479, 484, 721, 818
HpyF10VI	GCNNNNNNNGC	3 cut(s)	205, 402, 643
HpyF3I	CTNAG	1 cut(s)	107
HpySE526I	ACGT	1 cut(s)	557
Hsp92II	CATG	5 cut(s)	396, 410, 586, 597, 730
Ksp22I	TGATCA	1 cut(s)	664
KspAI	GTTAAC	1 cut(s)	187
Kzo9I	GATC	4 cut(s)	280, 538, 587, 664
LmnI	GCTCC	2 cut(s)	259, 326
Lsp1109I	GCAGC	1 cut(s)	48
LweI	GCATC	3 cut(s)	350, 529, 730
MaeI	CTAG	3 cut(s)	36, 284, 797
MaeII	ACGT	1 cut(s)	557
MaeIII	GTNAC	1 cut(s)	409
MalI	GATC	4 cut(s)	282, 540, 589, 666
MboI	GATC	4 cut(s)	280, 538, 587, 664
MboII	GAAGA	7 cut(s)	88, 136, 139, 305, 553, 722, 820
MflI	RGATCY	1 cut(s)	280
MhlI	GDGCHC	4 cut(s)	331, 349, 601, 639
MluCI	AATT	2 cut(s)	11, 530
MlyI	GAGTC	2 cut(s)	160, 209
MmeI	TCCRAC	2 cut(s)	127, 548
Mph1103I	ATGCAT	1 cut(s)	486
MseI	TTAA	5 cut(s)	186, 441, 497, 620, 735
MslI	CAYNNNNRTG	1 cut(s)	672
MspI	CCGG	2 cut(s)	160, 414
MspR9I	CCNGG	3 cut(s)	161, 357, 517
MvaI	CCWGG	2 cut(s)	357, 517
MwoI	GCNNNNNNNGC	3 cut(s)	205, 402, 643
NciI	CCSGG	1 cut(s)	161
NcoI	CCATGG	1 cut(s)	726
NdeII	GATC	4 cut(s)	280, 538, 587, 664
NlaIII	CATG	5 cut(s)	396, 410, 586, 597, 730
NlaIV	GGNNCC	2 cut(s)	328, 679
NsiI	ATGCAT	1 cut(s)	486
NspI	RCATGY	1 cut(s)	396
PaeI	GCATGC	1 cut(s)	396
PceI	AGGCCT	1 cut(s)	814
PcsI	WCGNNNNNNNCGW	1 cut(s)	784
PfeI	GAWTC	5 cut(s)	28, 43, 49, 55, 70
PinAI	ACCGGT	1 cut(s)	413
PkrI	GCNGC	2 cut(s)	63, 365
PleI	GAGTC	2 cut(s)	159, 209
PpsI	GAGTC	2 cut(s)	159, 209
Psp124BI	GAGCTC	1 cut(s)	639
Psp6I	CCWGG	2 cut(s)	355, 515
PspFI	CCCAGC	1 cut(s)	255
PspGI	CCWGG	2 cut(s)	355, 515
PspN4I	GGNNCC	2 cut(s)	328, 679
PspPI	GGNCC	1 cut(s)	677
PsuI	RGATCY	1 cut(s)	280
RseI	CAYNNNNRTG	1 cut(s)	672
SacI	GAGCTC	1 cut(s)	639
SaqAI	TTAA	5 cut(s)	186, 441, 497, 620, 735
SatI	GCNGC	2 cut(s)	62, 364
Sau3AI	GATC	4 cut(s)	280, 538, 587, 664
Sau96I	GGNCC	1 cut(s)	677
SchI	GAGTC	2 cut(s)	160, 209
ScrFI	CCNGG	3 cut(s)	161, 357, 517
SduI	GDGCHC	4 cut(s)	331, 349, 601, 639
SfaNI	GCATC	3 cut(s)	350, 529, 730
SfcI	CTRYAG	1 cut(s)	219
SinI	GGWCC	1 cut(s)	677
SmiMI	CAYNNNNRTG	1 cut(s)	672
SphI	GCATGC	1 cut(s)	396
Sse9I	AATT	2 cut(s)	11, 530
SseBI	AGGCCT	1 cut(s)	814
SsiI	CCGC	1 cut(s)	363
SspMI	CTAG	3 cut(s)	36, 284, 797
SstI	GAGCTC	1 cut(s)	639
StuI	AGGCCT	1 cut(s)	814
StyD4I	CCNGG	3 cut(s)	159, 355, 515
StyI	CCWWGG	3 cut(s)	275, 336, 726
TaiI	ACGT	1 cut(s)	560
TasI	AATT	2 cut(s)	11, 530
TauI	GCSGC	1 cut(s)	366
TfiI	GAWTC	5 cut(s)	28, 43, 49, 55, 70
Tru1I	TTAA	5 cut(s)	186, 441, 497, 620, 735
Tru9I	TTAA	5 cut(s)	186, 441, 497, 620, 735
TscAI	CASTG	2 cut(s)	373, 667
TseI	GCWGC	1 cut(s)	61
TspDTI	ATGAA	4 cut(s)	6, 305, 453, 723
TspRI	CASTG	2 cut(s)	373, 667
VpaK11BI	GGWCC	1 cut(s)	677
XagI	CCTNNNNNAGG	1 cut(s)	335
XceI	RCATGY	1 cut(s)	396
XcmI	CCANNNNNNNNNTGG	1 cut(s)	176
XmiI	GTMKAC	1 cut(s)	420
XspI	CTAG	3 cut(s)	36, 284, 797
Zsp2I	ATGCAT	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.