Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005015

Physical Location & Seq

Genomic Coordinates Forward (+)

54956697 .. 54957254

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0455000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGAACTTAAAAGAGCTCGAGGAAAGCTTCAAGGAACTGAGAATCATCAACGAAAAGCAAGAAAAACGTGTATGGTACCACGAGACGAGAGCTCAGAACTTAACCATCGCTTATGTTCTGCTGCAAGGCTTGTTTTCCATAGGGATTGTACTTTCCTCGTCGTCACCACCGTCTAGTACTCCCAGAAATCAATGGTGGGTTCCCTTCTCCATGATACTAGTTTCATCTGTAATCTTCTTCATGGCTTTCCTAGATGCTGTGACTATGTTTTATAGGACCCAGTACCATCTAGATATGAACTATATGGAGCAGGACCTCATATTCAAGAAGATACAAGAAGCCAAACACCCACCTGCAGCCAGTTATAAGCTCAGTCATTCCATCAAGATAGAAAAGTGCAGTGGTCATGAACAAGAAGTGCCTACAGAGCATGAAATTGTAAGACCTGATGTCTTTCAGCTCTTCAAACGCAAGGTTTATATTTACTTTACAGCTCTGGGTTTGTTCGCTTTCACTGTAATTCAGTTATACGCTTGCCGCTTGTTCTATATAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008168 GO:0008172 GO:0008757 GO:0009056 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0016020 GO:0016143 GO:0016145 GO:0016740 GO:0016741 GO:0018708 GO:0019748 GO:0019757 GO:0019759 GO:0019760 GO:0019762 GO:0031967 GO:0031975 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044248 GO:0044273 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0071704 GO:0071944 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPMT

Protein Analysis

185

Amino Acids

21.9

Weight (kDa)

8.78

Isoelectric Point (pI)

48.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43910 AT2G43910 AT2G43910 AT2G43920 AT2G43920 AT2G43920 AT2G43920 AT2G43920 AT2G43920 AT2G43940
fragaria_vesca	FvH4_1g00240 FvH4_1g00240 FvH4_1g00240
malus_domestica	MD15G1143500.v1.1
prunus_persica	Prupe.7G269600_v2.0.a1 Prupe.7G269600_v2.0.a1 Prupe.7G269600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0084541
rosa_laevigata	RLG00000015625
rosa_multiflora	Rmu_sc0009647.1_g000002
rosa_roxburghii	Rroxscaffold_2G00155980
rosa_rugosa	Rorug01G0454800 Rorug01G0454900 Rorug01G0455000 Rorug01G0455100
rosa_samantha	Rh2AG002900 Rh2BG002500 Rh2CG003000 Rh2DG003000
rosa_wichuraiana	Rw2G000260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	366
AarI	CACCTGC	1 cut(s)	361
Acc36I	ACCTGC	1 cut(s)	361
Acc65I	GGTACC	1 cut(s)	75
AccB1I	GGYRCC	1 cut(s)	75
AciI	CCGC	1 cut(s)	538
AfaI	GTAC	4 cut(s)	77, 150, 178, 284
AflIII	ACRYGT	1 cut(s)	67
AgsI	TTSAA	3 cut(s)	31, 325, 466
AhdI	GACNNNNNGTC	1 cut(s)	449
AhlI	ACTAGT	1 cut(s)	217
AluBI	AGCT	6 cut(s)	16, 27, 92, 370, 460, 494
AluI	AGCT	6 cut(s)	16, 27, 92, 370, 460, 494
Alw21I	GWGCWC	2 cut(s)	18, 94
Alw26I	GTCTC	1 cut(s)	77
Ama87I	CYCGRG	1 cut(s)	17
ApeKI	GCWGC	2 cut(s)	121, 356
Asp718I	GGTACC	1 cut(s)	75
AspS9I	GGNCC	2 cut(s)	276, 313
AsuHPI	GGTGA	1 cut(s)	156
AvaI	CYCGRG	1 cut(s)	17
AvaII	GGWCC	2 cut(s)	276, 313
BanI	GGYRCC	1 cut(s)	75
BanII	GRGCYC	2 cut(s)	18, 94
BauI	CACGAG	1 cut(s)	80
Bbv12I	GWGCWC	2 cut(s)	18, 94
BbvI	GCAGC	2 cut(s)	108, 368
BccI	CCATC	3 cut(s)	113, 294, 389
BcoDI	GTCTC	1 cut(s)	77
BcuI	ACTAGT	1 cut(s)	217
BfaI	CTAG	4 cut(s)	174, 218, 251, 290
BfmI	CTRYAG	2 cut(s)	354, 423
BfuAI	ACCTGC	1 cut(s)	361
BisI	GCNGC	3 cut(s)	122, 357, 538
BlsI	GCNGC	3 cut(s)	123, 358, 539
BmcAI	AGTACT	1 cut(s)	178
Bme18I	GGWCC	2 cut(s)	276, 313
BmeRI	GACNNNNNGTC	1 cut(s)	449
BmeT110I	CYCGRG	1 cut(s)	17
BmgT120I	GGNCC	2 cut(s)	276, 313
BmiI	GGNNCC	3 cut(s)	77, 201, 278
BmrI	ACTGGG	1 cut(s)	274
BmsI	GCATC	1 cut(s)	244
BmuI	ACTGGG	1 cut(s)	274
Bse1I	ACTGG	2 cut(s)	280, 360
BseMII	CTCAG	3 cut(s)	29, 107, 385
BseNI	ACTGG	2 cut(s)	280, 360
BseXI	GCAGC	2 cut(s)	108, 368
BsgI	GTGCAG	1 cut(s)	418
BshNI	GGYRCC	1 cut(s)	75
BsiHKAI	GWGCWC	2 cut(s)	18, 94
BsiHKCI	CYCGRG	1 cut(s)	17
BsmAI	GTCTC	1 cut(s)	77
BsmBI	CGTCTC	1 cut(s)	77
BsoBI	CYCGRG	1 cut(s)	17
Bsp1286I	GDGCHC	2 cut(s)	18, 94
BspACI	CCGC	1 cut(s)	538
BspCNI	CTCAG	3 cut(s)	30, 106, 384
BspHI	TCATGA	1 cut(s)	406
BspLI	GGNNCC	3 cut(s)	77, 201, 278
BspMAI	CTGCAG	1 cut(s)	358
BspMI	ACCTGC	1 cut(s)	361
BspQI	GCTCTTC	1 cut(s)	467
BspT107I	GGYRCC	1 cut(s)	75
BsrI	ACTGG	2 cut(s)	280, 360
BssSI	CACGAG	1 cut(s)	80
Bst2BI	CACGAG	1 cut(s)	80
Bst4CI	ACNGT	2 cut(s)	171, 517
Bst6I	CTCTTC	1 cut(s)	467
BstC8I	GCNNGC	1 cut(s)	535
BstDEI	CTNAG	3 cut(s)	38, 93, 371
BstMAI	GTCTC	1 cut(s)	77
BstMWI	GCNNNNNNNGC	1 cut(s)	427
BstSFI	CTRYAG	2 cut(s)	354, 423
BstV1I	GCAGC	2 cut(s)	108, 368
BtgZI	GCGATG	1 cut(s)	91
BtsI	GCAGTG	1 cut(s)	406
BtsIMutI	CAGTG	2 cut(s)	406, 513
BveI	ACCTGC	1 cut(s)	361
Cac8I	GCNNGC	1 cut(s)	535
CciI	TCATGA	1 cut(s)	406
Cfr13I	GGNCC	2 cut(s)	276, 313
Csp6I	GTAC	4 cut(s)	76, 149, 177, 283
CviAII	CATG	4 cut(s)	211, 241, 407, 431
CviQI	GTAC	4 cut(s)	76, 149, 177, 283
DdeI	CTNAG	3 cut(s)	38, 93, 371
DriI	GACNNNNNGTC	1 cut(s)	449
Eam1104I	CTCTTC	1 cut(s)	467
Eam1105I	GACNNNNNGTC	1 cut(s)	449
EarI	CTCTTC	1 cut(s)	467
Ecl136II	GAGCTC	2 cut(s)	16, 92
Eco24I	GRGCYC	2 cut(s)	18, 94
Eco47I	GGWCC	2 cut(s)	276, 313
Eco53kI	GAGCTC	2 cut(s)	16, 92
Eco88I	CYCGRG	1 cut(s)	17
EcoICRI	GAGCTC	2 cut(s)	16, 92
EcoO109I	RGGNCCY	2 cut(s)	276, 313
EcoT38I	GRGCYC	2 cut(s)	18, 94
Esp3I	CGTCTC	1 cut(s)	77
FaeI	CATG	4 cut(s)	214, 244, 410, 434
FatI	CATG	4 cut(s)	210, 240, 406, 430
Fnu4HI	GCNGC	3 cut(s)	122, 357, 538
FriOI	GRGCYC	2 cut(s)	18, 94
Fsp4HI	GCNGC	3 cut(s)	122, 357, 538
FspBI	CTAG	4 cut(s)	174, 218, 251, 290
GluI	GCNGC	3 cut(s)	122, 357, 538
Hin1II	CATG	4 cut(s)	214, 244, 410, 434
HindIII	AAGCTT	1 cut(s)	25
HinfI	GANTC	1 cut(s)	42
HphI	GGTGA	1 cut(s)	156
Hpy188I	TCNGA	1 cut(s)	96
Hpy188III	TCNNGA	4 cut(s)	290, 325, 385, 407
Hpy99I	CGWCG	1 cut(s)	163
HpyAV	CCTTC	1 cut(s)	214
HpyCH4III	ACNGT	2 cut(s)	171, 517
HpyCH4IV	ACGT	1 cut(s)	67
HpyCH4V	TGCA	3 cut(s)	124, 356, 399
HpyF10VI	GCNNNNNNNGC	1 cut(s)	427
HpyF3I	CTNAG	3 cut(s)	38, 93, 371
HpySE526I	ACGT	1 cut(s)	67
Hsp92II	CATG	4 cut(s)	214, 244, 410, 434
KpnI	GGTACC	1 cut(s)	79
LguI	GCTCTTC	1 cut(s)	467
LmnI	GCTCC	1 cut(s)	307
LpnPI	CCDG	7 cut(s)	196, 293, 296, 366, 373, 459, 482
Lsp1109I	GCAGC	2 cut(s)	108, 368
LweI	GCATC	1 cut(s)	244
MaeI	CTAG	4 cut(s)	174, 218, 251, 290
MaeII	ACGT	1 cut(s)	67
MaeIII	GTNAC	2 cut(s)	162, 259
MboII	GAAGA	4 cut(s)	226, 229, 340, 454
MhlI	GDGCHC	2 cut(s)	18, 94
MluCI	AATT	2 cut(s)	435, 519
MnlI	CCTC	3 cut(s)	13, 166, 326
MseI	TTAA	2 cut(s)	8, 101
MwoI	GCNNNNNNNGC	1 cut(s)	427
NlaIII	CATG	4 cut(s)	214, 244, 410, 434
NlaIV	GGNNCC	3 cut(s)	77, 201, 278
NmuCI	GTSAC	2 cut(s)	162, 259
PaeR7I	CTCGAG	1 cut(s)	17
PagI	TCATGA	1 cut(s)	406
PaqCI	CACCTGC	1 cut(s)	361
PciSI	GCTCTTC	1 cut(s)	467
PcsI	WCGNNNNNNNCGW	1 cut(s)	167
PfeI	GAWTC	1 cut(s)	42
PkrI	GCNGC	3 cut(s)	123, 358, 539
PpuMI	RGGWCCY	2 cut(s)	276, 313
PsiI	TTATAA	1 cut(s)	366
Psp124BI	GAGCTC	2 cut(s)	18, 94
Psp5II	RGGWCCY	2 cut(s)	276, 313
PspN4I	GGNNCC	3 cut(s)	77, 201, 278
PspPI	GGNCC	2 cut(s)	276, 313
PspPPI	RGGWCCY	2 cut(s)	276, 313
PspXI	VCTCGAGB	1 cut(s)	17
PstI	CTGCAG	1 cut(s)	358
RsaI	GTAC	4 cut(s)	77, 150, 178, 284
RsaNI	GTAC	4 cut(s)	76, 149, 177, 283
SacI	GAGCTC	2 cut(s)	18, 94
SapI	GCTCTTC	1 cut(s)	467
SaqAI	TTAA	2 cut(s)	8, 101
SatI	GCNGC	3 cut(s)	122, 357, 538
Sau96I	GGNCC	2 cut(s)	276, 313
ScaI	AGTACT	1 cut(s)	178
SduI	GDGCHC	2 cut(s)	18, 94
SfaNI	GCATC	1 cut(s)	244
SfcI	CTRYAG	2 cut(s)	354, 423
Sfr274I	CTCGAG	1 cut(s)	17
SinI	GGWCC	2 cut(s)	276, 313
SlaI	CTCGAG	1 cut(s)	17
SmlI	CTYRAG	1 cut(s)	17
SmoI	CTYRAG	1 cut(s)	17
SpeI	ACTAGT	1 cut(s)	217
Sse9I	AATT	2 cut(s)	435, 519
SsiI	CCGC	1 cut(s)	538
SspMI	CTAG	4 cut(s)	174, 218, 251, 290
SstI	GAGCTC	2 cut(s)	18, 94
TaaI	ACNGT	2 cut(s)	171, 517
TaiI	ACGT	1 cut(s)	70
TaqI	TCGA	1 cut(s)	18
TasI	AATT	2 cut(s)	435, 519
TatI	WGTACW	2 cut(s)	148, 176
TauI	GCSGC	1 cut(s)	540
TfiI	GAWTC	1 cut(s)	42
Tru1I	TTAA	2 cut(s)	8, 101
Tru9I	TTAA	2 cut(s)	8, 101
TscAI	CASTG	2 cut(s)	406, 520
TseFI	GTSAC	2 cut(s)	162, 259
TseI	GCWGC	2 cut(s)	121, 356
Tsp45I	GTSAC	2 cut(s)	162, 259
TspDTI	ATGAA	6 cut(s)	17, 213, 229, 311, 423, 447
TspRI	CASTG	2 cut(s)	406, 520
VpaK11BI	GGWCC	2 cut(s)	276, 313
XbaI	TCTAGA	1 cut(s)	289
XhoI	CTCGAG	1 cut(s)	17
XspI	CTAG	4 cut(s)	174, 218, 251, 290
ZrmI	AGTACT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.