Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009647.1

Orthogroup ID

OG0005015

Physical Location & Seq

Genomic Coordinates Reverse (-)

4734 .. 7260

Gene Structure 2527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009647.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

atgatgatgacgaagaagagagagcaaggagaccccgagagtcagagtcgggagaaccacaaacctcgtggtgttaacgagcttcagcaactcttgcagagcgactctacaggtggtgctggtggtggtgattgggacaagtgctgggagcaaggtctcaccccttgggatctaggacagccaactcctgttattgctcatcttcataggttgggagcccttcccaagggcagggctcttgtccctggatgcggcactggttatgatgttgtagagattgcatgccctgaacgccatgttaccggtgtagacatttcacacaatgccattaacaaagccctccagttgttttcctcactacccaatgcaatgcattttaccttcttaaaggtggacttttttacctggcatccaactgaattgtttgatctcatatttgattatacgttcttctgtgctattgaaccagacatgagatcagcatgggcacaaaagatgagggatatcttaaacccagatggagagctcataacgctaatgtttccaatcagtgatcatcttggtggacccccatacaaagtgtctgtttcagattatgaagaggtgttgcatcccatgggctttaaagcaatctccatcttggataatcatctggctgtcctacctcgcaagggacgagagaagctaggaaggtggaagaggcctgcaaaatccggacatgtaagcctgactctggtattaccgtcatcactcatccttcctgagagtagattagttgttgctgttgactcgggatcatttgataaagagatcagaatgtacagacgagaacaaatacgttcttcaaatgttataatgaagagatggcagtattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008168 GO:0008172 GO:0008757 GO:0009056 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0016020 GO:0016143 GO:0016145 GO:0016740 GO:0016741 GO:0018708 GO:0019748 GO:0019757 GO:0019759 GO:0019760 GO:0019762 GO:0031967 GO:0031975 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044248 GO:0044273 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0071704 GO:0071944 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPMT

Protein Analysis

291

Amino Acids

32.86

Weight (kDa)

7.18

Isoelectric Point (pI)

57.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43910 AT2G43910 AT2G43910 AT2G43920 AT2G43920 AT2G43920 AT2G43920 AT2G43920 AT2G43920 AT2G43940
fragaria_vesca	FvH4_1g00240 FvH4_1g00240 FvH4_1g00240
malus_domestica	MD15G1143500.v1.1
prunus_persica	Prupe.7G269600_v2.0.a1 Prupe.7G269600_v2.0.a1 Prupe.7G269600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0084541
rosa_laevigata	RLG00000015625
rosa_multiflora	Rmu_sc0009647.1_g000002
rosa_roxburghii	Rroxscaffold_2G00155980
rosa_rugosa	Rorug01G0454800 Rorug01G0454900 Rorug01G0455000 Rorug01G0455100
rosa_samantha	Rh2AG002900 Rh2BG002500 Rh2CG003000 Rh2DG003000
rosa_wichuraiana	Rw2G000260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	854
AccI	GTMKAC	1 cut(s)	309
AccIII	TCCGGA	1 cut(s)	713
AciI	CCGC	1 cut(s)	252
AclWI	GGATC	2 cut(s)	177, 802
AcuI	CTGAAG	1 cut(s)	68
AfaI	GTAC	1 cut(s)	821
AfiI	CCNNNNNNNGG	5 cut(s)	226, 231, 251, 671, 733
AflIII	ACRYGT	1 cut(s)	718
AgeI	ACCGGT	1 cut(s)	302
AgsI	TTSAA	2 cut(s)	464, 846
AjnI	CCWGG	2 cut(s)	244, 404
AluBI	AGCT	3 cut(s)	82, 526, 685
AluI	AGCT	3 cut(s)	82, 526, 685
Alw21I	GWGCWC	1 cut(s)	528
Alw26I	GTCTC	2 cut(s)	24, 161
AlwI	GGATC	2 cut(s)	177, 802
Ama87I	CYCGRG	2 cut(s)	35, 790
Aor13HI	TCCGGA	1 cut(s)	713
AoxI	GGCC	1 cut(s)	701
AsiGI	ACCGGT	1 cut(s)	302
AspS9I	GGNCC	1 cut(s)	566
AsuHPI	GGTGA	2 cut(s)	140, 151
AvaI	CYCGRG	2 cut(s)	35, 790
AvaII	GGWCC	1 cut(s)	566
BaeGI	GKGCMC	1 cut(s)	490
BanII	GRGCYC	3 cut(s)	220, 238, 528
BauI	CACGAG	1 cut(s)	66
Bbv12I	GWGCWC	1 cut(s)	528
BccI	CCATC	3 cut(s)	512, 644, 858
BciT130I	CCWGG	2 cut(s)	246, 406
BclI	TGATCA	1 cut(s)	553
BcoDI	GTCTC	2 cut(s)	24, 161
BfaI	CTAG	2 cut(s)	173, 686
BfmI	CTRYAG	1 cut(s)	108
BisI	GCNGC	1 cut(s)	253
BlsI	GCNGC	1 cut(s)	254
Bme1390I	CCNGG	2 cut(s)	246, 406
Bme18I	GGWCC	1 cut(s)	566
BmeT110I	CYCGRG	2 cut(s)	35, 790
BmgT120I	GGNCC	1 cut(s)	566
BmiI	GGNNCC	2 cut(s)	217, 568
BmrFI	CCNGG	2 cut(s)	246, 406
BmsI	GCATC	3 cut(s)	239, 418, 619
BpmI	CTGGAG	1 cut(s)	326
BsaBI	GATNNNNATC	1 cut(s)	648
BsaI	GGTCTC	2 cut(s)	24, 161
BsaJI	CCNNGG	4 cut(s)	164, 225, 244, 615
BsaWI	WCCGGW	2 cut(s)	302, 713
Bsc4I	CCNNNNNNNGG	5 cut(s)	226, 231, 251, 671, 733
Bse118I	RCCGGY	1 cut(s)	302
Bse1I	ACTGG	2 cut(s)	262, 343
Bse3DI	GCAATG	1 cut(s)	375
Bse8I	GATNNNNATC	1 cut(s)	648
BseAI	TCCGGA	1 cut(s)	713
BseBI	CCWGG	2 cut(s)	246, 406
BseDI	CCNNGG	4 cut(s)	164, 225, 244, 615
BseGI	GGATG	4 cut(s)	254, 409, 610, 753
BseJI	GATNNNNATC	1 cut(s)	648
BseLI	CCNNNNNNNGG	5 cut(s)	226, 231, 251, 671, 733
BseMI	GCAATG	1 cut(s)	375
BseMII	CTCAG	1 cut(s)	753
BseNI	ACTGG	2 cut(s)	262, 343
BseSI	GKGCMC	1 cut(s)	490
BseYI	CCCAGC	1 cut(s)	144
BshFI	GGCC	1 cut(s)	703
BshTI	ACCGGT	1 cut(s)	302
BsiHKAI	GWGCWC	1 cut(s)	528
BsiHKCI	CYCGRG	2 cut(s)	35, 790
BsiSI	CCGG	2 cut(s)	303, 714
BslFI	GGGAC	3 cut(s)	149, 227, 687
BslI	CCNNNNNNNGG	5 cut(s)	226, 231, 251, 671, 733
BsmAI	GTCTC	2 cut(s)	24, 161
BsmFI	GGGAC	3 cut(s)	149, 227, 687
BsnI	GGCC	1 cut(s)	703
Bso31I	GGTCTC	2 cut(s)	24, 161
BsoBI	CYCGRG	2 cut(s)	35, 790
Bsp1286I	GDGCHC	4 cut(s)	220, 238, 490, 528
Bsp13I	TCCGGA	1 cut(s)	713
Bsp1407I	TGTACA	1 cut(s)	819
Bsp143I	GATC	6 cut(s)	169, 427, 476, 553, 794, 810
Bsp19I	CCATGG	1 cut(s)	615
BspACI	CCGC	1 cut(s)	252
BspANI	GGCC	1 cut(s)	703
BspCNI	CTCAG	1 cut(s)	754
BspEI	TCCGGA	1 cut(s)	713
BspLI	GGNNCC	2 cut(s)	217, 568
BspPI	GGATC	2 cut(s)	177, 802
BspTNI	GGTCTC	2 cut(s)	24, 161
BsrDI	GCAATG	1 cut(s)	375
BsrFI	RCCGGY	1 cut(s)	302
BsrGI	TGTACA	1 cut(s)	819
BsrI	ACTGG	2 cut(s)	262, 343
BssAI	RCCGGY	1 cut(s)	302
BssECI	CCNNGG	4 cut(s)	164, 225, 244, 615
BssMI	GATC	6 cut(s)	169, 427, 476, 553, 794, 810
BssSI	CACGAG	1 cut(s)	66
BssT1I	CCWWGG	3 cut(s)	164, 225, 615
Bst2BI	CACGAG	1 cut(s)	66
Bst2UI	CCWGG	2 cut(s)	246, 406
Bst4CI	ACNGT	1 cut(s)	744
Bst6I	CTCTTC	4 cut(s)	11, 594, 692, 854
BstAPI	GCANNNNNTGC	1 cut(s)	94
BstAUI	TGTACA	1 cut(s)	819
BstC8I	GCNNGC	2 cut(s)	283, 705
BstDEI	CTNAG	1 cut(s)	762
BstDSI	CCRYGG	1 cut(s)	615
BstENI	CCTNNNNNAGG	1 cut(s)	224
BstF5I	GGATG	4 cut(s)	254, 409, 610, 753
BstKTI	GATC	6 cut(s)	172, 430, 479, 556, 797, 813
BstMAI	GTCTC	2 cut(s)	24, 161
BstMBI	GATC	6 cut(s)	169, 427, 476, 553, 794, 810
BstMWI	GCNNNNNNNGC	3 cut(s)	94, 291, 532
BstNI	CCWGG	2 cut(s)	246, 406
BstNSI	RCATGY	2 cut(s)	285, 722
BstSCI	CCNGG	2 cut(s)	244, 404
BstSFI	CTRYAG	1 cut(s)	108
BstSLI	GKGCMC	1 cut(s)	490
BstX2I	RGATCY	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	169
BsuRI	GGCC	1 cut(s)	703
BtgI	CCRYGG	1 cut(s)	615
BtsCI	GGATG	4 cut(s)	254, 409, 610, 753
BtsIMutI	CAGTG	2 cut(s)	255, 556
Cac8I	GCNNGC	2 cut(s)	283, 705
Cfr10I	RCCGGY	1 cut(s)	302
Cfr13I	GGNCC	1 cut(s)	566
Csp6I	GTAC	1 cut(s)	820
CspAI	ACCGGT	1 cut(s)	302
CspCI	CAANNNNNGTGG	2 cut(s)	49, 84
CviAII	CATG	6 cut(s)	282, 296, 472, 483, 616, 719
CviQI	GTAC	1 cut(s)	820
DdeI	CTNAG	1 cut(s)	762
DpnI	GATC	6 cut(s)	171, 429, 478, 555, 796, 812
DpnII	GATC	6 cut(s)	169, 427, 476, 553, 794, 810
DraI	TTTAAA	1 cut(s)	625
Eam1104I	CTCTTC	4 cut(s)	11, 594, 692, 854
EarI	CTCTTC	4 cut(s)	11, 594, 692, 854
Ecl136II	GAGCTC	1 cut(s)	526
Eco130I	CCWWGG	3 cut(s)	164, 225, 615
Eco147I	AGGCCT	1 cut(s)	703
Eco24I	GRGCYC	3 cut(s)	220, 238, 528
Eco31I	GGTCTC	2 cut(s)	24, 161
Eco32I	GATATC	1 cut(s)	505
Eco47I	GGWCC	1 cut(s)	566
Eco53kI	GAGCTC	1 cut(s)	526
Eco57I	CTGAAG	1 cut(s)	68
Eco88I	CYCGRG	2 cut(s)	35, 790
EcoICRI	GAGCTC	1 cut(s)	526
EcoNI	CCTNNNNNAGG	1 cut(s)	224
EcoRII	CCWGG	2 cut(s)	244, 404
EcoRV	GATATC	1 cut(s)	505
EcoT14I	CCWWGG	3 cut(s)	164, 225, 615
EcoT22I	ATGCAT	1 cut(s)	375
EcoT38I	GRGCYC	3 cut(s)	220, 238, 528
ErhI	CCWWGG	3 cut(s)	164, 225, 615
FaeI	CATG	6 cut(s)	285, 299, 475, 486, 619, 722
FalI	AAGNNNNNCTT	2 cut(s)	380, 412
FaqI	GGGAC	3 cut(s)	149, 227, 687
FatI	CATG	6 cut(s)	281, 295, 471, 482, 615, 718
FbaI	TGATCA	1 cut(s)	553
FblI	GTMKAC	1 cut(s)	309
Fnu4HI	GCNGC	1 cut(s)	253
FokI	GGATG	4 cut(s)	261, 396, 597, 740
FriOI	GRGCYC	3 cut(s)	220, 238, 528
Fsp4HI	GCNGC	1 cut(s)	253
FspBI	CTAG	2 cut(s)	173, 686
GluI	GCNGC	1 cut(s)	253
GsaI	CCCAGC	1 cut(s)	148
GsuI	CTGGAG	1 cut(s)	326
HaeIII	GGCC	1 cut(s)	703
HapII	CCGG	2 cut(s)	303, 714
Hin1II	CATG	6 cut(s)	285, 299, 475, 486, 619, 722
HincII	GTYRAC	2 cut(s)	76, 787
HindII	GTYRAC	2 cut(s)	76, 787
HinfI	GANTC	5 cut(s)	40, 46, 104, 730, 788
HpaI	GTTAAC	1 cut(s)	76
HpaII	CCGG	2 cut(s)	303, 714
HphI	GGTGA	2 cut(s)	140, 151
Hpy166II	GTNNAC	5 cut(s)	76, 310, 394, 566, 787
Hpy188I	TCNGA	3 cut(s)	45, 592, 815
Hpy188III	TCNNGA	4 cut(s)	50, 714, 761, 792
Hpy8I	GTNNAC	5 cut(s)	76, 310, 394, 566, 787
HpyAV	CCTTC	4 cut(s)	230, 391, 684, 767
HpyCH4III	ACNGT	1 cut(s)	744
HpyCH4IV	ACGT	2 cut(s)	446, 838
HpyCH4V	TGCA	6 cut(s)	97, 281, 368, 373, 610, 707
HpyF10VI	GCNNNNNNNGC	3 cut(s)	94, 291, 532
HpyF3I	CTNAG	1 cut(s)	762
HpySE526I	ACGT	2 cut(s)	446, 838
Hsp92II	CATG	6 cut(s)	285, 299, 475, 486, 619, 722
Kpn2I	TCCGGA	1 cut(s)	713
Ksp22I	TGATCA	1 cut(s)	553
KspAI	GTTAAC	1 cut(s)	76
Kzo9I	GATC	6 cut(s)	169, 427, 476, 553, 794, 810
LmnI	GCTCC	2 cut(s)	148, 215
LweI	GCATC	3 cut(s)	239, 418, 619
MaeI	CTAG	2 cut(s)	173, 686
MaeII	ACGT	2 cut(s)	446, 838
MaeIII	GTNAC	1 cut(s)	298
MalI	GATC	6 cut(s)	171, 429, 478, 555, 796, 812
MboI	GATC	6 cut(s)	169, 427, 476, 553, 794, 810
MboII	GAAGA	8 cut(s)	25, 28, 194, 442, 611, 709, 834, 871
MflI	RGATCY	1 cut(s)	169
MhlI	GDGCHC	4 cut(s)	220, 238, 490, 528
MluCI	AATT	1 cut(s)	419
MlyI	GAGTC	5 cut(s)	49, 55, 98, 724, 782
MmeI	TCCRAC	1 cut(s)	437
MnlI	CCTC	7 cut(s)	75, 350, 364, 492, 595, 675, 693
Mph1103I	ATGCAT	1 cut(s)	375
MroI	TCCGGA	1 cut(s)	713
MseI	TTAA	6 cut(s)	75, 330, 386, 509, 624, 874
MslI	CAYNNNNRTG	1 cut(s)	561
MspI	CCGG	2 cut(s)	303, 714
MspR9I	CCNGG	2 cut(s)	246, 406
MvaI	CCWGG	2 cut(s)	246, 406
MwoI	GCNNNNNNNGC	3 cut(s)	94, 291, 532
NcoI	CCATGG	1 cut(s)	615
NdeII	GATC	6 cut(s)	169, 427, 476, 553, 794, 810
NlaIII	CATG	6 cut(s)	285, 299, 475, 486, 619, 722
NlaIV	GGNNCC	2 cut(s)	217, 568
NsiI	ATGCAT	1 cut(s)	375
NspI	RCATGY	2 cut(s)	285, 722
PaeI	GCATGC	1 cut(s)	285
PceI	AGGCCT	1 cut(s)	703
PciI	ACATGT	1 cut(s)	718
PcsI	WCGNNNNNNNCGW	1 cut(s)	673
PinAI	ACCGGT	1 cut(s)	302
PkrI	GCNGC	1 cut(s)	254
PleI	GAGTC	5 cut(s)	48, 54, 98, 724, 782
PpsI	GAGTC	5 cut(s)	48, 54, 98, 724, 782
PscI	ACATGT	1 cut(s)	718
PsiI	TTATAA	1 cut(s)	854
Psp124BI	GAGCTC	1 cut(s)	528
Psp6I	CCWGG	2 cut(s)	244, 404
PspFI	CCCAGC	1 cut(s)	144
PspGI	CCWGG	2 cut(s)	244, 404
PspN4I	GGNNCC	2 cut(s)	217, 568
PspPI	GGNCC	1 cut(s)	566
PsuI	RGATCY	1 cut(s)	169
RsaI	GTAC	1 cut(s)	821
RsaNI	GTAC	1 cut(s)	820
RseI	CAYNNNNRTG	1 cut(s)	561
SacI	GAGCTC	1 cut(s)	528
SaqAI	TTAA	6 cut(s)	75, 330, 386, 509, 624, 874
SatI	GCNGC	1 cut(s)	253
Sau3AI	GATC	6 cut(s)	169, 427, 476, 553, 794, 810
Sau96I	GGNCC	1 cut(s)	566
SchI	GAGTC	5 cut(s)	49, 55, 98, 724, 782
ScrFI	CCNGG	2 cut(s)	246, 406
SduI	GDGCHC	4 cut(s)	220, 238, 490, 528
SfaNI	GCATC	3 cut(s)	239, 418, 619
SfcI	CTRYAG	1 cut(s)	108
SinI	GGWCC	1 cut(s)	566
SmiMI	CAYNNNNRTG	1 cut(s)	561
SphI	GCATGC	1 cut(s)	285
Sse9I	AATT	1 cut(s)	419
SseBI	AGGCCT	1 cut(s)	703
SsiI	CCGC	1 cut(s)	252
SspMI	CTAG	2 cut(s)	173, 686
SstI	GAGCTC	1 cut(s)	528
StuI	AGGCCT	1 cut(s)	703
StyD4I	CCNGG	2 cut(s)	244, 404
StyI	CCWWGG	3 cut(s)	164, 225, 615
TaaI	ACNGT	1 cut(s)	744
TaiI	ACGT	2 cut(s)	449, 841
TasI	AATT	1 cut(s)	419
TatI	WGTACW	1 cut(s)	819
TauI	GCSGC	1 cut(s)	255
Tru1I	TTAA	6 cut(s)	75, 330, 386, 509, 624, 874
Tru9I	TTAA	6 cut(s)	75, 330, 386, 509, 624, 874
TscAI	CASTG	2 cut(s)	262, 556
TspDTI	ATGAA	3 cut(s)	194, 612, 872
TspRI	CASTG	2 cut(s)	262, 556
VpaK11BI	GGWCC	1 cut(s)	566
XagI	CCTNNNNNAGG	1 cut(s)	224
XceI	RCATGY	2 cut(s)	285, 722
XcmI	CCANNNNNNNNNTGG	1 cut(s)	65
XmiI	GTMKAC	1 cut(s)	309
XspI	CTAG	2 cut(s)	173, 686
Zsp2I	ATGCAT	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.