Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005015

Physical Location & Seq

Genomic Coordinates Forward (+)

243098 .. 245066

Gene Structure 1969 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG002500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGTCCTCTCAATTTTCATCATCATTGATTAGGACTAGGAGGAATCTCAATCTGCTGCCTTTGATTCCTCCCACAAGTAGAAAAAGGGTGTTCCTTGGTGGTGCCAACCAACTGAGGATGATGACGACGAAGAAGAAGAGAGAGCAGGGAGACCCCGAGAGTCGGGAGAACCACAAACCTCGTGGTGTTAACGAGCTTCAGCAACTCTTGCACAGCGACTCTACAGGTGGTGCTGCTGCTGGTGATTGGGACAAGTGCTGGGAGCAAGGTCTCACCCCTTGGGATTTAGGACAGCCAACTCCTGTTATTGCTCATCTTCATAGGTTGGGAGCCCTTCCCAAGGGCAGGGCTCTTGTCCCTGGATGCGGCACTGGTTATGATGTTGTAGAGATTGCATGCCCTGAACGCCATGTTACCGGTTTAGACATTTCACACAATGCCATTAACAAGGCCCTCCAGTTGTTTTCCTCACTACCCACTGCAATGCATTTTACCTTCTTAAAGGTGGACTTTTTTACCTGGCATCCAACTGAATTGTTTGATCTCATATTTGATTATACGTTCTTCTGTGCTATTGAACCAGACATGAGATCAGCATGGGCACAAAAGATGAGGGATATCTTAAAACCAGATGGAGAGCTCATAACGCTAATGTTTCCCATCAGTGATCATCTTGGTGGACCCCCATACAAAGTGTCAGTTTCAGATTATGAAGAGGTGTTGCATCCCATGGGCTTTAAAGCAATCTCCATCTTGGATAATCATCTGGCTGTCCTACCTCGCAAGGGACGAGAGAAGCTAGGAAGGTGGAAGAGGCCTGCAAGTAAATCCTCTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008168 GO:0008172 GO:0008757 GO:0009056 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0016020 GO:0016143 GO:0016145 GO:0016740 GO:0016741 GO:0018708 GO:0019748 GO:0019757 GO:0019759 GO:0019760 GO:0019762 GO:0031967 GO:0031975 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044248 GO:0044273 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0071704 GO:0071944 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPMT

Protein Analysis

279

Amino Acids

31.35

Weight (kDa)

9.16

Isoelectric Point (pI)

50.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPMT	PF05724	79 - 247	4.8e-45	Thiopurine S-methyltransferase (TPMT)
Methyltransf_31	PF13847	120 - 216	2e-10	Methyltransferase domain
Methyltransf_11	PF08241	120 - 215	4.6e-08	Methyltransferase domain
Methyltransf_25	PF13649	121 - 212	1.4e-11	Methyltransferase domain
Methyltransf_12	PF08242	121 - 214	4e-10	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43910 AT2G43910 AT2G43910 AT2G43920 AT2G43920 AT2G43920 AT2G43920 AT2G43920 AT2G43920 AT2G43940
fragaria_vesca	FvH4_1g00240 FvH4_1g00240 FvH4_1g00240
malus_domestica	MD15G1143500.v1.1
prunus_persica	Prupe.7G269600_v2.0.a1 Prupe.7G269600_v2.0.a1 Prupe.7G269600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0084541
rosa_laevigata	RLG00000015625
rosa_multiflora	Rmu_sc0009647.1_g000002
rosa_roxburghii	Rroxscaffold_2G00155980
rosa_rugosa	Rorug01G0454800 Rorug01G0454900 Rorug01G0455000 Rorug01G0455100
rosa_samantha	Rh2AG002900 Rh2BG002500 Rh2CG003000 Rh2DG003000
rosa_wichuraiana	Rw2G000260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	101
AciI	CCGC	1 cut(s)	366
AcuI	CTGAAG	1 cut(s)	182
AfiI	CCNNNNNNNGG	5 cut(s)	162, 340, 345, 365, 785
AgeI	ACCGGT	1 cut(s)	416
AgsI	TTSAA	1 cut(s)	578
AjnI	CCWGG	2 cut(s)	358, 518
AluBI	AGCT	3 cut(s)	196, 640, 799
AluI	AGCT	3 cut(s)	196, 640, 799
Alw21I	GWGCWC	1 cut(s)	642
Alw26I	GTCTC	2 cut(s)	144, 275
Ama87I	CYCGRG	1 cut(s)	155
AoxI	GGCC	2 cut(s)	450, 815
ApeKI	GCWGC	3 cut(s)	55, 233, 236
AsiGI	ACCGGT	1 cut(s)	416
AspS9I	GGNCC	2 cut(s)	451, 680
AsuHPI	GGTGA	2 cut(s)	254, 265
AvaI	CYCGRG	1 cut(s)	155
AvaII	GGWCC	1 cut(s)	680
BaeGI	GKGCMC	1 cut(s)	604
BanI	GGYRCC	1 cut(s)	101
BanII	GRGCYC	3 cut(s)	334, 352, 642
BauI	CACGAG	1 cut(s)	180
Bbv12I	GWGCWC	1 cut(s)	642
BbvI	GCAGC	3 cut(s)	42, 220, 223
BccI	CCATC	3 cut(s)	626, 668, 758
BciT130I	CCWGG	2 cut(s)	360, 520
BclI	TGATCA	1 cut(s)	667
BcoDI	GTCTC	2 cut(s)	144, 275
BfaI	CTAG	2 cut(s)	36, 800
BfmI	CTRYAG	1 cut(s)	222
BisI	GCNGC	4 cut(s)	56, 234, 237, 367
BlsI	GCNGC	4 cut(s)	57, 235, 238, 368
Bme1390I	CCNGG	2 cut(s)	360, 520
Bme18I	GGWCC	1 cut(s)	680
BmeT110I	CYCGRG	1 cut(s)	155
BmgT120I	GGNCC	2 cut(s)	451, 680
BmiI	GGNNCC	3 cut(s)	103, 331, 682
BmrFI	CCNGG	2 cut(s)	360, 520
BmsI	GCATC	3 cut(s)	353, 532, 733
BpmI	CTGGAG	1 cut(s)	440
BsaBI	GATNNNNATC	1 cut(s)	762
BsaI	GGTCTC	2 cut(s)	144, 275
BsaJI	CCNNGG	5 cut(s)	94, 278, 339, 358, 729
BsaWI	WCCGGW	1 cut(s)	416
Bsc4I	CCNNNNNNNGG	5 cut(s)	162, 340, 345, 365, 785
Bse118I	RCCGGY	1 cut(s)	416
Bse1I	ACTGG	2 cut(s)	376, 457
Bse3DI	GCAATG	1 cut(s)	489
Bse8I	GATNNNNATC	1 cut(s)	762
BseBI	CCWGG	2 cut(s)	360, 520
BseDI	CCNNGG	5 cut(s)	94, 278, 339, 358, 729
BseGI	GGATG	4 cut(s)	123, 368, 523, 724
BseJI	GATNNNNATC	1 cut(s)	762
BseLI	CCNNNNNNNGG	5 cut(s)	162, 340, 345, 365, 785
BseMI	GCAATG	1 cut(s)	489
BseMII	CTCAG	1 cut(s)	104
BseNI	ACTGG	2 cut(s)	376, 457
BseSI	GKGCMC	1 cut(s)	604
BseXI	GCAGC	3 cut(s)	42, 220, 223
BseYI	CCCAGC	1 cut(s)	258
BshFI	GGCC	2 cut(s)	452, 817
BshNI	GGYRCC	1 cut(s)	101
BshTI	ACCGGT	1 cut(s)	416
BsiHKAI	GWGCWC	1 cut(s)	642
BsiHKCI	CYCGRG	1 cut(s)	155
BsiSI	CCGG	1 cut(s)	417
BslFI	GGGAC	3 cut(s)	263, 341, 801
BslI	CCNNNNNNNGG	5 cut(s)	162, 340, 345, 365, 785
BsmAI	GTCTC	2 cut(s)	144, 275
BsmFI	GGGAC	3 cut(s)	263, 341, 801
BsnI	GGCC	2 cut(s)	452, 817
Bso31I	GGTCTC	2 cut(s)	144, 275
BsoBI	CYCGRG	1 cut(s)	155
Bsp1286I	GDGCHC	4 cut(s)	334, 352, 604, 642
Bsp143I	GATC	3 cut(s)	541, 590, 667
Bsp19I	CCATGG	1 cut(s)	729
BspACI	CCGC	1 cut(s)	366
BspANI	GGCC	2 cut(s)	452, 817
BspCNI	CTCAG	1 cut(s)	105
BspLI	GGNNCC	3 cut(s)	103, 331, 682
BspT107I	GGYRCC	1 cut(s)	101
BspTNI	GGTCTC	2 cut(s)	144, 275
BsrDI	GCAATG	1 cut(s)	489
BsrFI	RCCGGY	1 cut(s)	416
BsrI	ACTGG	2 cut(s)	376, 457
BssAI	RCCGGY	1 cut(s)	416
BssECI	CCNNGG	5 cut(s)	94, 278, 339, 358, 729
BssMI	GATC	3 cut(s)	541, 590, 667
BssSI	CACGAG	1 cut(s)	180
BssT1I	CCWWGG	4 cut(s)	94, 278, 339, 729
Bst2BI	CACGAG	1 cut(s)	180
Bst2UI	CCWGG	2 cut(s)	360, 520
Bst6I	CTCTTC	3 cut(s)	131, 708, 806
BstAPI	GCANNNNNTGC	1 cut(s)	208
BstC8I	GCNNGC	2 cut(s)	397, 819
BstDEI	CTNAG	1 cut(s)	113
BstDSI	CCRYGG	1 cut(s)	729
BstENI	CCTNNNNNAGG	1 cut(s)	338
BstF5I	GGATG	4 cut(s)	123, 368, 523, 724
BstKTI	GATC	3 cut(s)	544, 593, 670
BstMAI	GTCTC	2 cut(s)	144, 275
BstMBI	GATC	3 cut(s)	541, 590, 667
BstMWI	GCNNNNNNNGC	3 cut(s)	208, 405, 646
BstNI	CCWGG	2 cut(s)	360, 520
BstNSI	RCATGY	1 cut(s)	399
BstSCI	CCNGG	2 cut(s)	358, 518
BstSFI	CTRYAG	1 cut(s)	222
BstSLI	GKGCMC	1 cut(s)	604
BstV1I	GCAGC	3 cut(s)	42, 220, 223
BsuRI	GGCC	2 cut(s)	452, 817
BtgI	CCRYGG	1 cut(s)	729
BtsCI	GGATG	4 cut(s)	123, 368, 523, 724
BtsI	GCAGTG	1 cut(s)	477
BtsIMutI	CAGTG	3 cut(s)	369, 477, 670
Cac8I	GCNNGC	2 cut(s)	397, 819
Cfr10I	RCCGGY	1 cut(s)	416
Cfr13I	GGNCC	2 cut(s)	451, 680
CspAI	ACCGGT	1 cut(s)	416
CspCI	CAANNNNNGTGG	2 cut(s)	163, 198
CviAII	CATG	5 cut(s)	396, 410, 586, 597, 730
DdeI	CTNAG	1 cut(s)	113
DpnI	GATC	3 cut(s)	543, 592, 669
DpnII	GATC	3 cut(s)	541, 590, 667
DraI	TTTAAA	1 cut(s)	739
Eam1104I	CTCTTC	3 cut(s)	131, 708, 806
EarI	CTCTTC	3 cut(s)	131, 708, 806
Ecl136II	GAGCTC	1 cut(s)	640
Eco130I	CCWWGG	4 cut(s)	94, 278, 339, 729
Eco147I	AGGCCT	1 cut(s)	817
Eco24I	GRGCYC	3 cut(s)	334, 352, 642
Eco31I	GGTCTC	2 cut(s)	144, 275
Eco32I	GATATC	1 cut(s)	619
Eco47I	GGWCC	1 cut(s)	680
Eco53kI	GAGCTC	1 cut(s)	640
Eco57I	CTGAAG	1 cut(s)	182
Eco88I	CYCGRG	1 cut(s)	155
EcoICRI	GAGCTC	1 cut(s)	640
EcoNI	CCTNNNNNAGG	1 cut(s)	338
EcoO109I	RGGNCCY	1 cut(s)	451
EcoRII	CCWGG	2 cut(s)	358, 518
EcoRV	GATATC	1 cut(s)	619
EcoT14I	CCWWGG	4 cut(s)	94, 278, 339, 729
EcoT22I	ATGCAT	1 cut(s)	489
EcoT38I	GRGCYC	3 cut(s)	334, 352, 642
ErhI	CCWWGG	4 cut(s)	94, 278, 339, 729
FaeI	CATG	5 cut(s)	399, 413, 589, 600, 733
FalI	AAGNNNNNCTT	2 cut(s)	494, 526
FaqI	GGGAC	3 cut(s)	263, 341, 801
FatI	CATG	5 cut(s)	395, 409, 585, 596, 729
FbaI	TGATCA	1 cut(s)	667
Fnu4HI	GCNGC	4 cut(s)	56, 234, 237, 367
FokI	GGATG	4 cut(s)	130, 375, 510, 711
FriOI	GRGCYC	3 cut(s)	334, 352, 642
Fsp4HI	GCNGC	4 cut(s)	56, 234, 237, 367
FspBI	CTAG	2 cut(s)	36, 800
GluI	GCNGC	4 cut(s)	56, 234, 237, 367
GsaI	CCCAGC	1 cut(s)	262
GsuI	CTGGAG	1 cut(s)	440
HaeIII	GGCC	2 cut(s)	452, 817
HapII	CCGG	1 cut(s)	417
Hin1II	CATG	5 cut(s)	399, 413, 589, 600, 733
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HinfI	GANTC	4 cut(s)	43, 64, 160, 218
HpaI	GTTAAC	1 cut(s)	190
HpaII	CCGG	1 cut(s)	417
HphI	GGTGA	2 cut(s)	254, 265
Hpy166II	GTNNAC	3 cut(s)	190, 508, 680
Hpy188I	TCNGA	1 cut(s)	706
Hpy188III	TCNNGA	1 cut(s)	164
Hpy8I	GTNNAC	3 cut(s)	190, 508, 680
Hpy99I	CGWCG	1 cut(s)	130
HpyAV	CCTTC	3 cut(s)	344, 505, 798
HpyCH4IV	ACGT	1 cut(s)	560
HpyCH4V	TGCA	6 cut(s)	211, 395, 482, 487, 724, 821
HpyF10VI	GCNNNNNNNGC	3 cut(s)	208, 405, 646
HpyF3I	CTNAG	1 cut(s)	113
HpySE526I	ACGT	1 cut(s)	560
Hsp92II	CATG	5 cut(s)	399, 413, 589, 600, 733
Ksp22I	TGATCA	1 cut(s)	667
KspAI	GTTAAC	1 cut(s)	190
Kzo9I	GATC	3 cut(s)	541, 590, 667
LmnI	GCTCC	2 cut(s)	262, 329
Lsp1109I	GCAGC	3 cut(s)	42, 220, 223
LweI	GCATC	3 cut(s)	353, 532, 733
MaeI	CTAG	2 cut(s)	36, 800
MaeII	ACGT	1 cut(s)	560
MaeIII	GTNAC	1 cut(s)	412
MalI	GATC	3 cut(s)	543, 592, 669
MboI	GATC	3 cut(s)	541, 590, 667
MboII	GAAGA	7 cut(s)	142, 145, 148, 308, 556, 725, 823
MhlI	GDGCHC	4 cut(s)	334, 352, 604, 642
MluCI	AATT	2 cut(s)	11, 533
MlyI	GAGTC	2 cut(s)	169, 212
MmeI	TCCRAC	1 cut(s)	551
Mph1103I	ATGCAT	1 cut(s)	489
MseI	TTAA	5 cut(s)	189, 444, 500, 623, 738
MslI	CAYNNNNRTG	2 cut(s)	482, 675
MspI	CCGG	1 cut(s)	417
MspR9I	CCNGG	2 cut(s)	360, 520
MvaI	CCWGG	2 cut(s)	360, 520
MwoI	GCNNNNNNNGC	3 cut(s)	208, 405, 646
NcoI	CCATGG	1 cut(s)	729
NdeII	GATC	3 cut(s)	541, 590, 667
NlaIII	CATG	5 cut(s)	399, 413, 589, 600, 733
NlaIV	GGNNCC	3 cut(s)	103, 331, 682
NsiI	ATGCAT	1 cut(s)	489
NspI	RCATGY	1 cut(s)	399
PaeI	GCATGC	1 cut(s)	399
PceI	AGGCCT	1 cut(s)	817
PcsI	WCGNNNNNNNCGW	1 cut(s)	787
PfeI	GAWTC	2 cut(s)	43, 64
PinAI	ACCGGT	1 cut(s)	416
PkrI	GCNGC	4 cut(s)	57, 235, 238, 368
PleI	GAGTC	2 cut(s)	168, 212
PpsI	GAGTC	2 cut(s)	168, 212
Psp124BI	GAGCTC	1 cut(s)	642
Psp6I	CCWGG	2 cut(s)	358, 518
PspFI	CCCAGC	1 cut(s)	258
PspGI	CCWGG	2 cut(s)	358, 518
PspN4I	GGNNCC	3 cut(s)	103, 331, 682
PspPI	GGNCC	2 cut(s)	451, 680
RseI	CAYNNNNRTG	2 cut(s)	482, 675
SacI	GAGCTC	1 cut(s)	642
SaqAI	TTAA	5 cut(s)	189, 444, 500, 623, 738
SatI	GCNGC	4 cut(s)	56, 234, 237, 367
Sau3AI	GATC	3 cut(s)	541, 590, 667
Sau96I	GGNCC	2 cut(s)	451, 680
SchI	GAGTC	2 cut(s)	169, 212
ScrFI	CCNGG	2 cut(s)	360, 520
SduI	GDGCHC	4 cut(s)	334, 352, 604, 642
SfaNI	GCATC	3 cut(s)	353, 532, 733
SfcI	CTRYAG	1 cut(s)	222
SinI	GGWCC	1 cut(s)	680
SmiMI	CAYNNNNRTG	2 cut(s)	482, 675
SphI	GCATGC	1 cut(s)	399
Sse9I	AATT	2 cut(s)	11, 533
SseBI	AGGCCT	1 cut(s)	817
SsiI	CCGC	1 cut(s)	366
SspMI	CTAG	2 cut(s)	36, 800
SstI	GAGCTC	1 cut(s)	642
StuI	AGGCCT	1 cut(s)	817
StyD4I	CCNGG	2 cut(s)	358, 518
StyI	CCWWGG	4 cut(s)	94, 278, 339, 729
TaiI	ACGT	1 cut(s)	563
TasI	AATT	2 cut(s)	11, 533
TauI	GCSGC	1 cut(s)	369
TfiI	GAWTC	2 cut(s)	43, 64
Tru1I	TTAA	5 cut(s)	189, 444, 500, 623, 738
Tru9I	TTAA	5 cut(s)	189, 444, 500, 623, 738
TscAI	CASTG	3 cut(s)	376, 484, 670
TseI	GCWGC	3 cut(s)	55, 233, 236
TspDTI	ATGAA	3 cut(s)	6, 308, 726
TspRI	CASTG	3 cut(s)	376, 484, 670
VpaK11BI	GGWCC	1 cut(s)	680
XagI	CCTNNNNNAGG	1 cut(s)	338
XceI	RCATGY	1 cut(s)	399
XcmI	CCANNNNNNNNNTGG	1 cut(s)	179
XspI	CTAG	2 cut(s)	36, 800
Zsp2I	ATGCAT	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.