Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0005015

Physical Location & Seq

Genomic Coordinates Forward (+)

124758 .. 126816

Gene Structure 2059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g00240.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGTACTGTCAATTTGCGTGGTCGTTAATAAGCAGGAGGCCTAGGCTGTACCAATACCAATTGAGGATGATGATGAAGAAGAGAGAGCAAGGGGAAGCTGTTAGTGAGCTTCAGCAACACTTAGCACCGCGACTCTACCGGAGTACCGGTGTTGGCTGGGACAAGTTGTGGGAGCAAGGTGTGACCCCTTGGGATTTAGGACGCCCAACGCCTGTTGTTGCTCATCTTCACAAGTCGGGTGGCCTCCCCAAGGGCAGGGCTCTTGTTCCCGGATGCGGCACTGGTTATGATGTTGTAGAGATTGCATGTCCCGATCGCCTTGTTACTGGTTTAGACATTTCACACAATGCCATTAACAAGGCCCTCCAGTTGTTCTCCTCACTTCCCAATGCAATGCATTTTACCTTCTTAAAAGTGGACTTCTTTACCTGGCATCCAACTGATTTGTTTGATCTCGTTTTTGATTATACGTTCTTCTGTGCTATTGAACCAGACATGAGATCCGCGTGGGCACAAAAGATGGCGGATATCTTAAAACCAGATGGAGAGCTCATAACGCTAATGTTTCCTATCGATGATCATGTTGGTGGACCTCCATACAAAGTGTCAGTTTCAGACTATGAAGAGGTGTTGCATCCCATGGGATTTAAAGCAATCTCCATCTTGGATAATGATCTAGCTGTCAAACCTCGCAAGGGACGAGAGAAGCTAGGAAGGTGGAAGAGGTCTGCAAGTAGATCCTCTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008168 GO:0008172 GO:0008757 GO:0009056 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0016020 GO:0016143 GO:0016145 GO:0016740 GO:0016741 GO:0018708 GO:0019748 GO:0019757 GO:0019759 GO:0019760 GO:0019762 GO:0031967 GO:0031975 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044248 GO:0044273 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0071704 GO:0071944 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPMT

Protein Analysis

250

Amino Acids

28.35

Weight (kDa)

8.82

Isoelectric Point (pI)

46.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPMT	PF05724	52 - 190	2e-37	Thiopurine S-methyltransferase (TPMT)
Methyltransf_31	PF13847	90 - 186	1e-08	Methyltransferase domain
Methyltransf_11	PF08241	90 - 185	6.4e-08	Methyltransferase domain
Methyltransf_25	PF13649	91 - 182	3.9e-11	Methyltransferase domain
Methyltransf_12	PF08242	91 - 184	2.9e-09	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43910 AT2G43910 AT2G43910 AT2G43920 AT2G43920 AT2G43920 AT2G43920 AT2G43920 AT2G43920 AT2G43940
fragaria_vesca	FvH4_1g00240 FvH4_1g00240 FvH4_1g00240
malus_domestica	MD15G1143500.v1.1
prunus_persica	Prupe.7G269600_v2.0.a1 Prupe.7G269600_v2.0.a1 Prupe.7G269600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0084541
rosa_laevigata	RLG00000015625
rosa_multiflora	Rmu_sc0009647.1_g000002
rosa_roxburghii	Rroxscaffold_2G00155980
rosa_rugosa	Rorug01G0454800 Rorug01G0454900 Rorug01G0455000 Rorug01G0455100
rosa_samantha	Rh2AG002900 Rh2BG002500 Rh2CG003000 Rh2DG003000
rosa_wichuraiana	Rw2G000260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	130, 506
AciI	CCGC	4 cut(s)	128, 276, 504, 524
AclWI	GGATC	2 cut(s)	495, 732
AcuI	CTGAAG	1 cut(s)	95
AcyI	GRCGYC	1 cut(s)	202
AfaI	GTAC	3 cut(s)	5, 50, 145
AfiI	CCNNNNNNNGG	4 cut(s)	250, 255, 275, 695
AgeI	ACCGGT	1 cut(s)	146
AgsI	TTSAA	1 cut(s)	488
AjnI	CCWGG	1 cut(s)	428
AluBI	AGCT	5 cut(s)	98, 109, 550, 680, 709
AluI	AGCT	5 cut(s)	98, 109, 550, 680, 709
Alw21I	GWGCWC	1 cut(s)	552
AlwI	GGATC	2 cut(s)	495, 732
AoxI	GGCC	3 cut(s)	38, 241, 360
AsiGI	ACCGGT	1 cut(s)	146
AspA2I	CCTAGG	1 cut(s)	41
AspS9I	GGNCC	2 cut(s)	361, 590
AsuC2I	CCSGG	1 cut(s)	270
AvaII	GGWCC	1 cut(s)	590
AvrII	CCTAGG	1 cut(s)	41
BaeGI	GKGCMC	1 cut(s)	514
BaeI	ACNNNNGTAYC	2 cut(s)	127, 160
BanII	GRGCYC	2 cut(s)	262, 552
Bbv12I	GWGCWC	1 cut(s)	552
BccI	CCATC	3 cut(s)	514, 536, 668
BciT130I	CCWGG	1 cut(s)	430
BclI	TGATCA	1 cut(s)	577
BcnI	CCSGG	1 cut(s)	270
BfaI	CTAG	3 cut(s)	42, 677, 710
BisI	GCNGC	1 cut(s)	277
BlnI	CCTAGG	1 cut(s)	41
BlsI	GCNGC	1 cut(s)	278
Bme1390I	CCNGG	2 cut(s)	270, 430
Bme18I	GGWCC	1 cut(s)	590
BmgT120I	GGNCC	2 cut(s)	361, 590
BmrFI	CCNGG	2 cut(s)	270, 430
BmsI	GCATC	3 cut(s)	263, 442, 643
BpmI	CTGGAG	1 cut(s)	350
BpuMI	CCSGG	1 cut(s)	270
Bsa29I	ATCGAT	1 cut(s)	573
BsaBI	GATNNNNATC	1 cut(s)	672
BsaHI	GRCGYC	1 cut(s)	202
BsaJI	CCNNGG	4 cut(s)	41, 188, 249, 639
BsaWI	WCCGGW	2 cut(s)	138, 146
BsaXI	ACNNNNNCTCC	2 cut(s)	133, 163
Bsc4I	CCNNNNNNNGG	4 cut(s)	250, 255, 275, 695
Bse118I	RCCGGY	1 cut(s)	146
Bse1I	ACTGG	3 cut(s)	286, 331, 367
Bse3DI	GCAATG	1 cut(s)	399
Bse8I	GATNNNNATC	1 cut(s)	672
BseBI	CCWGG	1 cut(s)	430
BseCI	ATCGAT	1 cut(s)	573
BseDI	CCNNGG	4 cut(s)	41, 188, 249, 639
BseGI	GGATG	4 cut(s)	72, 278, 433, 634
BseJI	GATNNNNATC	1 cut(s)	672
BseLI	CCNNNNNNNGG	4 cut(s)	250, 255, 275, 695
BseMI	GCAATG	1 cut(s)	399
BseNI	ACTGG	3 cut(s)	286, 331, 367
BseRI	GAGGAG	1 cut(s)	367
BseSI	GKGCMC	1 cut(s)	514
BseYI	CCCAGC	1 cut(s)	156
Bsh1236I	CGCG	2 cut(s)	130, 506
Bsh1285I	CGRYCG	1 cut(s)	316
BshFI	GGCC	3 cut(s)	40, 243, 362
BshTI	ACCGGT	1 cut(s)	146
BshVI	ATCGAT	1 cut(s)	573
BsiEI	CGRYCG	1 cut(s)	316
BsiHKAI	GWGCWC	1 cut(s)	552
BsiSI	CCGG	3 cut(s)	139, 147, 270
BslFI	GGGAC	3 cut(s)	173, 294, 711
BslI	CCNNNNNNNGG	4 cut(s)	250, 255, 275, 695
BsmFI	GGGAC	3 cut(s)	173, 294, 711
BsnI	GGCC	3 cut(s)	40, 243, 362
Bsp1286I	GDGCHC	3 cut(s)	262, 514, 552
Bsp143I	GATC	6 cut(s)	313, 451, 500, 577, 673, 737
Bsp19I	CCATGG	1 cut(s)	639
BspACI	CCGC	4 cut(s)	128, 276, 504, 524
BspANI	GGCC	3 cut(s)	40, 243, 362
BspDI	ATCGAT	1 cut(s)	573
BspFNI	CGCG	2 cut(s)	130, 506
BspPI	GGATC	2 cut(s)	495, 732
BsrDI	GCAATG	1 cut(s)	399
BsrFI	RCCGGY	1 cut(s)	146
BsrI	ACTGG	3 cut(s)	286, 331, 367
BssAI	RCCGGY	1 cut(s)	146
BssECI	CCNNGG	4 cut(s)	41, 188, 249, 639
BssMI	GATC	6 cut(s)	313, 451, 500, 577, 673, 737
BssNI	GRCGYC	1 cut(s)	202
BssT1I	CCWWGG	4 cut(s)	41, 188, 249, 639
Bst2UI	CCWGG	1 cut(s)	430
Bst4CI	ACNGT	1 cut(s)	8
Bst6I	CTCTTC	3 cut(s)	74, 618, 716
BstACI	GRCGYC	1 cut(s)	202
BstDEI	CTNAG	1 cut(s)	121
BstDSI	CCRYGG	1 cut(s)	639
BstENI	CCTNNNNNAGG	1 cut(s)	248
BstF5I	GGATG	4 cut(s)	72, 278, 433, 634
BstFNI	CGCG	2 cut(s)	130, 506
BstKTI	GATC	6 cut(s)	316, 454, 503, 580, 676, 740
BstMBI	GATC	6 cut(s)	313, 451, 500, 577, 673, 737
BstMCI	CGRYCG	1 cut(s)	316
BstMWI	GCNNNNNNNGC	1 cut(s)	556
BstNI	CCWGG	1 cut(s)	430
BstNSI	RCATGY	1 cut(s)	309
BstSCI	CCNGG	2 cut(s)	268, 428
BstSLI	GKGCMC	1 cut(s)	514
BstUI	CGCG	2 cut(s)	130, 506
BstX2I	RGATCY	2 cut(s)	500, 737
BstYI	RGATCY	2 cut(s)	500, 737
Bsu15I	ATCGAT	1 cut(s)	573
BsuRI	GGCC	3 cut(s)	40, 243, 362
BsuTUI	ATCGAT	1 cut(s)	573
BtgI	CCRYGG	1 cut(s)	639
BtsCI	GGATG	4 cut(s)	72, 278, 433, 634
BtsIMutI	CAGTG	1 cut(s)	279
Cfr10I	RCCGGY	1 cut(s)	146
Cfr13I	GGNCC	2 cut(s)	361, 590
ClaI	ATCGAT	1 cut(s)	573
CseI	GACGC	1 cut(s)	210
Csp6I	GTAC	3 cut(s)	4, 49, 144
CspAI	ACCGGT	1 cut(s)	146
CspCI	CAANNNNNGTGG	3 cut(s)	34, 220, 255
CviAII	CATG	4 cut(s)	306, 496, 581, 640
CviQI	GTAC	3 cut(s)	4, 49, 144
DdeI	CTNAG	1 cut(s)	121
DpnI	GATC	6 cut(s)	315, 453, 502, 579, 675, 739
DpnII	GATC	6 cut(s)	313, 451, 500, 577, 673, 737
DraI	TTTAAA	1 cut(s)	649
Eam1104I	CTCTTC	3 cut(s)	74, 618, 716
EarI	CTCTTC	3 cut(s)	74, 618, 716
EciI	GGCGGA	1 cut(s)	539
Ecl136II	GAGCTC	1 cut(s)	550
Eco130I	CCWWGG	4 cut(s)	41, 188, 249, 639
Eco147I	AGGCCT	1 cut(s)	40
Eco24I	GRGCYC	2 cut(s)	262, 552
Eco32I	GATATC	1 cut(s)	529
Eco47I	GGWCC	1 cut(s)	590
Eco53kI	GAGCTC	1 cut(s)	550
Eco57I	CTGAAG	1 cut(s)	95
EcoICRI	GAGCTC	1 cut(s)	550
EcoNI	CCTNNNNNAGG	1 cut(s)	248
EcoO109I	RGGNCCY	1 cut(s)	361
EcoRII	CCWGG	1 cut(s)	428
EcoRV	GATATC	1 cut(s)	529
EcoT14I	CCWWGG	4 cut(s)	41, 188, 249, 639
EcoT22I	ATGCAT	1 cut(s)	399
EcoT38I	GRGCYC	2 cut(s)	262, 552
ErhI	CCWWGG	4 cut(s)	41, 188, 249, 639
FaeI	CATG	4 cut(s)	309, 499, 584, 643
FaiI	YATR	9 cut(s)	288, 307, 468, 497, 554, 582, 598, 621, 641
FaqI	GGGAC	3 cut(s)	173, 294, 711
FatI	CATG	4 cut(s)	305, 495, 580, 639
FbaI	TGATCA	1 cut(s)	577
Fnu4HI	GCNGC	1 cut(s)	277
FokI	GGATG	4 cut(s)	79, 285, 420, 621
FriOI	GRGCYC	2 cut(s)	262, 552
Fsp4HI	GCNGC	1 cut(s)	277
FspBI	CTAG	3 cut(s)	42, 677, 710
GluI	GCNGC	1 cut(s)	277
GsaI	CCCAGC	1 cut(s)	160
GsuI	CTGGAG	1 cut(s)	350
HaeIII	GGCC	3 cut(s)	40, 243, 362
HapII	CCGG	3 cut(s)	139, 147, 270
HgaI	GACGC	1 cut(s)	210
Hin1I	GRCGYC	1 cut(s)	202
Hin1II	CATG	4 cut(s)	309, 499, 584, 643
HinfI	GANTC	1 cut(s)	132
HpaII	CCGG	3 cut(s)	139, 147, 270
Hpy166II	GTNNAC	2 cut(s)	418, 590
Hpy188I	TCNGA	1 cut(s)	616
Hpy188III	TCNNGA	1 cut(s)	311
Hpy8I	GTNNAC	2 cut(s)	418, 590
HpyAV	CCTTC	2 cut(s)	415, 708
HpyCH4III	ACNGT	1 cut(s)	8
HpyCH4IV	ACGT	1 cut(s)	470
HpyCH4V	TGCA	5 cut(s)	305, 392, 397, 634, 731
HpyF10VI	GCNNNNNNNGC	1 cut(s)	556
HpyF3I	CTNAG	1 cut(s)	121
HpySE526I	ACGT	1 cut(s)	470
Hsp92I	GRCGYC	1 cut(s)	202
Hsp92II	CATG	4 cut(s)	309, 499, 584, 643
Ksp22I	TGATCA	1 cut(s)	577
Kzo9I	GATC	6 cut(s)	313, 451, 500, 577, 673, 737
LmnI	GCTCC	1 cut(s)	172
LweI	GCATC	3 cut(s)	263, 442, 643
MaeI	CTAG	3 cut(s)	42, 677, 710
MaeII	ACGT	1 cut(s)	470
MaeIII	GTNAC	2 cut(s)	181, 322
MalI	GATC	6 cut(s)	315, 453, 502, 579, 675, 739
MboI	GATC	6 cut(s)	313, 451, 500, 577, 673, 737
MboII	GAAGA	6 cut(s)	88, 91, 218, 466, 635, 733
MfeI	CAATTG	1 cut(s)	59
MflI	RGATCY	2 cut(s)	500, 737
MhlI	GDGCHC	3 cut(s)	262, 514, 552
MluCI	AATT	2 cut(s)	11, 59
MlyI	GAGTC	1 cut(s)	126
MmeI	TCCRAC	1 cut(s)	461
MnlI	CCTC	9 cut(s)	30, 57, 254, 374, 388, 603, 619, 699, 717
Mph1103I	ATGCAT	1 cut(s)	399
MseI	TTAA	5 cut(s)	26, 354, 410, 533, 648
MslI	CAYNNNNRTG	1 cut(s)	585
MspI	CCGG	3 cut(s)	139, 147, 270
MspR9I	CCNGG	2 cut(s)	270, 430
MunI	CAATTG	1 cut(s)	59
MvaI	CCWGG	1 cut(s)	430
MvnI	CGCG	2 cut(s)	130, 506
MwoI	GCNNNNNNNGC	1 cut(s)	556
NciI	CCSGG	1 cut(s)	270
NcoI	CCATGG	1 cut(s)	639
NdeII	GATC	6 cut(s)	313, 451, 500, 577, 673, 737
NlaIII	CATG	4 cut(s)	309, 499, 584, 643
NmuCI	GTSAC	1 cut(s)	181
NsiI	ATGCAT	1 cut(s)	399
NspI	RCATGY	1 cut(s)	309
PceI	AGGCCT	1 cut(s)	40
PcsI	WCGNNNNNNNCGW	1 cut(s)	697
PfoI	TCCNGGA	1 cut(s)	268
PinAI	ACCGGT	1 cut(s)	146
PkrI	GCNGC	1 cut(s)	278
Ple19I	CGATCG	1 cut(s)	316
PleI	GAGTC	1 cut(s)	126
PpsI	GAGTC	1 cut(s)	126
Psp124BI	GAGCTC	1 cut(s)	552
Psp6I	CCWGG	1 cut(s)	428
PspFI	CCCAGC	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	428
PspPI	GGNCC	2 cut(s)	361, 590
PsuI	RGATCY	2 cut(s)	500, 737
PvuI	CGATCG	1 cut(s)	316
RsaI	GTAC	3 cut(s)	5, 50, 145
RsaNI	GTAC	3 cut(s)	4, 49, 144
RseI	CAYNNNNRTG	1 cut(s)	585
SacI	GAGCTC	1 cut(s)	552
SaqAI	TTAA	5 cut(s)	26, 354, 410, 533, 648
SatI	GCNGC	1 cut(s)	277
Sau3AI	GATC	6 cut(s)	313, 451, 500, 577, 673, 737
Sau96I	GGNCC	2 cut(s)	361, 590
SchI	GAGTC	1 cut(s)	126
ScrFI	CCNGG	2 cut(s)	270, 430
SduI	GDGCHC	3 cut(s)	262, 514, 552
SfaNI	GCATC	3 cut(s)	263, 442, 643
SinI	GGWCC	1 cut(s)	590
SmiMI	CAYNNNNRTG	1 cut(s)	585
Sse9I	AATT	2 cut(s)	11, 59
SseBI	AGGCCT	1 cut(s)	40
SsiI	CCGC	4 cut(s)	128, 276, 504, 524
SspMI	CTAG	3 cut(s)	42, 677, 710
SstI	GAGCTC	1 cut(s)	552
StuI	AGGCCT	1 cut(s)	40
StyD4I	CCNGG	2 cut(s)	268, 428
StyI	CCWWGG	4 cut(s)	41, 188, 249, 639
TaaI	ACNGT	1 cut(s)	8
TaiI	ACGT	1 cut(s)	473
TaqI	TCGA	1 cut(s)	573
TasI	AATT	2 cut(s)	11, 59
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	1 cut(s)	279
Tru1I	TTAA	5 cut(s)	26, 354, 410, 533, 648
Tru9I	TTAA	5 cut(s)	26, 354, 410, 533, 648
TscAI	CASTG	1 cut(s)	286
TseFI	GTSAC	1 cut(s)	181
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	2 cut(s)	89, 636
TspRI	CASTG	1 cut(s)	286
VpaK11BI	GGWCC	1 cut(s)	590
XagI	CCTNNNNNAGG	1 cut(s)	248
XceI	RCATGY	1 cut(s)	309
XmaJI	CCTAGG	1 cut(s)	41
XspI	CTAG	3 cut(s)	42, 677, 710
Zsp2I	ATGCAT	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.