AT2G44730
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0010006
Physical Location & Seq
Reverse (-)
18437333 .. 18438565
1233 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G44730.1

Sequence Viewer

Length: 1119 bp
ATGTCCGATCCGGATTCTCCGATGAACCACGATCCAATTCCGGATCCATCACCTTTAGCTCCCCTCCCGCCACCATTATCTTCCTCCGCTCATGACGATGCGTCAACCGAACCAGCTTCCAACACAGATCTGAAGAGCGCCTCCATCCCCACCGCGTCCAAGAACTCTAGGCGGTTACCTCCGCCGTGCTGGTCTCTGGAAGAGACGATCGCGCTAATTGACGCGTACAGAGACAAATGGTACGCTCTTAACCGTGGAAATCTAAAGGCGAATCACTGGGAAGAAGTTGCAGAAGCGGTTGGTGCTAACTGCCCCGACGTGATTCTTAAGAAAACCGCGGTTCAGTGCCGTCACAAGATGGAGAAGCTCCGGAAAAGGTACCGGACCGAGATACAGAGAGCTAGATCTGTGCCGGTGGCGAGGTTTATATCGTCTTGGGTTCATTTTAAGCGAATGGAAGCTATGGAGAATAGACCAGAGATTAAACAAGGTAACGAAAGTGGAGATGATGATGATCACGATGATGGTAATTACACAGCTAGGTATCAATTCAGCGGCGGAGGAGGAGGAGCGAGGACGACGCCGAGGTTCTTTAACAGGAATGGTACAGCTGGATCTGGTGGTGGTGGAGGGAGTAGTAGTAGCGGCGGGATTCGAATTCGGATACCGACTGGAGTGAGTATAGCACAGCCTGGACCGAGGTTTCCCGGTAAGATTGATCAGAAATACACGGCGAGTCCAAGTGCTGGTGTGAGTTCAAATCCGAGAGCTGGTCGTGGTATCGGAGCAGGAGGATCTAGTTACGGTGCTAGAGTTGTGAGAATTCCTGAAGGAGGAGGGAAACGAGGGAGAGAGATGATGATGAAGACGGAGGAGGATGATAATGATCCAATGGTGGAGATAGCTAGTGCGATAAAGCTGCTTGGAGATACGTTGGTGAGAACAGAGCAGACGAGAATGGAGATGACGAGAGAGATAGAAGCGATGAGGATGGATACAGAGATGAAGAGGACAAAGATGATTTTGGAATCTCAACAACGAATTGTGGAAGCGTTTGCTAAAAGCTTATCAGATTATACTACTACGGAGGAGCAAGACAAGAAGAAGAAAGCTAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

372

Amino Acids

40.78

Weight (kDa)

9.08

Isoelectric Point (pI)

46.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 62 - 155 3.9e-16 Myb/SANT-like DNA-binding domain
MADF_DNA_bdg PF10545 82 - 154 3.3e-11 Alcohol dehydrogenase transcription factor Myb/SANT-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 378
AccB1I GGYRCC 1 cut(s) 378
AccB7I CCANNNNNTGG 1 cut(s) 746
AccBSI CCGCTC 1 cut(s) 89
AccII CGCG 4 cut(s) 155, 212, 224, 338
AccIII TCCGGA 3 cut(s) 10, 40, 369
AclWI GGATC 7 cut(s) 2, 26, 38, 51, 622, 802, 881
AcsI RAATTY 2 cut(s) 657, 822
AcuI CTGAAG 2 cut(s) 152, 849
AcyI GRCGYC 1 cut(s) 581
AfaI GTAC 4 cut(s) 227, 242, 380, 607
AfiI CCNNNNNNNGG 3 cut(s) 746, 770, 833
AflII CTTAAG 1 cut(s) 326
AflIII ACRYGT 1 cut(s) 222
AgsI TTSAA 1 cut(s) 759
AhdI GACNNNNNGTC 1 cut(s) 100
AjiI CACGTC 1 cut(s) 319
AjnI CCWGG 1 cut(s) 691
Alw26I GTCTC 3 cut(s) 197, 198, 225
AlwI GGATC 7 cut(s) 2, 26, 38, 51, 622, 802, 881
Aor13HI TCCGGA 3 cut(s) 10, 40, 369
ApeKI GCWGC 1 cut(s) 919
ApoI RAATTY 2 cut(s) 657, 822
Asp718I GGTACC 1 cut(s) 378
AspLEI GCGC 2 cut(s) 140, 214
AspS9I GGNCC 2 cut(s) 384, 695
AsuC2I CCSGG 1 cut(s) 708
AsuHPI GGTGA 2 cut(s) 42, 949
AsuII TTCGAA 1 cut(s) 655
AvaII GGWCC 2 cut(s) 384, 695
BaeI ACNNNNGTAYC 2 cut(s) 921, 954
BamHI GGATCC 1 cut(s) 43
BanI GGYRCC 1 cut(s) 378
BbsI GAAGAC 1 cut(s) 872
BbvI GCAGC 1 cut(s) 906
BccI CCATC 5 cut(s) 55, 152, 352, 518, 985
BceAI ACGGC 3 cut(s) 169, 333, 747
BcgI CGANNNNNNTGC 2 cut(s) 901, 935
BciT130I CCWGG 1 cut(s) 693
BciVI GTATCC 2 cut(s) 657, 988
BclI TGATCA 2 cut(s) 514, 718
BcnI CCSGG 1 cut(s) 708
BcoDI GTCTC 3 cut(s) 197, 198, 225
BfaI CTAG 7 cut(s) 168, 402, 540, 798, 810, 906, 1113
BfoI RGCGCY 1 cut(s) 141
BfrI CTTAAG 1 cut(s) 326
BfuI GTATCC 2 cut(s) 657, 988
BglII AGATCT 2 cut(s) 127, 404
BisI GCNGC 3 cut(s) 556, 646, 920
BlsI GCNGC 3 cut(s) 557, 647, 921
Bme1390I CCNGG 2 cut(s) 693, 708
Bme18I GGWCC 2 cut(s) 384, 695
BmeRI GACNNNNNGTC 1 cut(s) 100
BmgBI CACGTC 1 cut(s) 319
BmgT120I GGNCC 2 cut(s) 384, 695
BmiI GGNNCC 2 cut(s) 45, 380
BmrFI CCNGG 2 cut(s) 693, 708
BmrI ACTGGG 1 cut(s) 286
BmsI GCATC 1 cut(s) 88
BmuI ACTGGG 1 cut(s) 286
BpiI GAAGAC 1 cut(s) 872
BpmI CTGGAG 1 cut(s) 693
Bpu14I TTCGAA 1 cut(s) 655
BpuMI CCSGG 1 cut(s) 708
BsaBI GATNNNNATC 2 cut(s) 513, 885
BsaHI GRCGYC 1 cut(s) 581
BsaI GGTCTC 1 cut(s) 198
BsaJI CCNNGG 4 cut(s) 253, 336, 584, 698
BsaWI WCCGGW 4 cut(s) 10, 40, 369, 381
BsaXI ACNNNNNCTCC 2 cut(s) 625, 655
Bsc4I CCNNNNNNNGG 3 cut(s) 746, 770, 833
Bse118I RCCGGY 1 cut(s) 412
Bse1I ACTGG 2 cut(s) 281, 676
Bse8I GATNNNNATC 2 cut(s) 513, 885
BseAI TCCGGA 3 cut(s) 10, 40, 369
BseBI CCWGG 1 cut(s) 693
BseDI CCNNGG 4 cut(s) 253, 336, 584, 698
BseGI GGATG 3 cut(s) 144, 883, 996
BseJI GATNNNNATC 2 cut(s) 513, 885
BseLI CCNNNNNNNGG 3 cut(s) 746, 770, 833
BseNI ACTGG 2 cut(s) 281, 676
BseRI GAGGAG 6 cut(s) 576, 579, 582, 849, 887, 1103
BseXI GCAGC 1 cut(s) 906
Bsh1236I CGCG 4 cut(s) 155, 212, 224, 338
Bsh1285I CGRYCG 1 cut(s) 210
BshNI GGYRCC 1 cut(s) 378
BsiEI CGRYCG 1 cut(s) 210
BsiSI CCGG 6 cut(s) 11, 41, 370, 382, 413, 708
BslI CCNNNNNNNGG 3 cut(s) 746, 770, 833
BsmAI GTCTC 3 cut(s) 197, 198, 225
BsmBI CGTCTC 1 cut(s) 197
Bso31I GGTCTC 1 cut(s) 198
Bsp119I TTCGAA 1 cut(s) 655
Bsp13I TCCGGA 3 cut(s) 10, 40, 369
BspEI TCCGGA 3 cut(s) 10, 40, 369
BspFNI CGCG 4 cut(s) 155, 212, 224, 338
BspHI TCATGA 1 cut(s) 91
BspLI GGNNCC 2 cut(s) 45, 380
BspPI GGATC 7 cut(s) 2, 26, 38, 51, 622, 802, 881
BspQI GCTCTTC 1 cut(s) 128
BspT104I TTCGAA 1 cut(s) 655
BspT107I GGYRCC 1 cut(s) 378
BspTI CTTAAG 1 cut(s) 326
BspTNI GGTCTC 1 cut(s) 198
BsrBI CCGCTC 1 cut(s) 89
BsrFI RCCGGY 1 cut(s) 412
BsrI ACTGG 2 cut(s) 281, 676
BssAI RCCGGY 1 cut(s) 412
BssECI CCNNGG 4 cut(s) 253, 336, 584, 698
BssNI GRCGYC 1 cut(s) 581
Bst2UI CCWGG 1 cut(s) 693
Bst4CI ACNGT 2 cut(s) 254, 806
Bst6I CTCTTC 3 cut(s) 128, 195, 1001
BstACI GRCGYC 1 cut(s) 581
BstAFI CTTAAG 1 cut(s) 326
BstBI TTCGAA 1 cut(s) 655
BstDSI CCRYGG 2 cut(s) 253, 336
BstEII GGTNACC 1 cut(s) 174
BstENI CCTNNNNNAGG 1 cut(s) 831
BstF5I GGATG 3 cut(s) 144, 883, 996
BstFNI CGCG 4 cut(s) 155, 212, 224, 338
BstH2I RGCGCY 1 cut(s) 141
BstHHI GCGC 2 cut(s) 140, 214
BstMAI GTCTC 3 cut(s) 197, 198, 225
BstMCI CGRYCG 1 cut(s) 210
BstMWI GCNNNNNNNGC 1 cut(s) 302
BstNI CCWGG 1 cut(s) 693
BstPI GGTNACC 1 cut(s) 174
BstSCI CCNGG 2 cut(s) 691, 706
BstUI CGCG 4 cut(s) 155, 212, 224, 338
BstV1I GCAGC 1 cut(s) 906
BstV2I GAAGAC 1 cut(s) 872
BstX2I RGATCY 5 cut(s) 43, 127, 404, 614, 794
BstYI RGATCY 5 cut(s) 43, 127, 404, 614, 794
BsuI GTATCC 2 cut(s) 657, 988
BtgI CCRYGG 2 cut(s) 253, 336
BtgZI GCGATG 1 cut(s) 998
BtrI CACGTC 1 cut(s) 319
BtsCI GGATG 3 cut(s) 144, 883, 996
BtsIMutI CAGTG 2 cut(s) 274, 350
CciI TCATGA 1 cut(s) 91
CfoI GCGC 2 cut(s) 140, 214
Cfr10I RCCGGY 1 cut(s) 412
Cfr13I GGNCC 2 cut(s) 384, 695
Cfr42I CCGCGG 1 cut(s) 339
CpoI CGGWCCG 1 cut(s) 384
CseI GACGC 4 cut(s) 90, 144, 230, 589
Csp6I GTAC 4 cut(s) 226, 241, 379, 606
CspI CGGWCCG 1 cut(s) 384
CviAII CATG 1 cut(s) 92
CviQI GTAC 4 cut(s) 226, 241, 379, 606
DriI GACNNNNNGTC 1 cut(s) 100
Eam1104I CTCTTC 3 cut(s) 128, 195, 1001
Eam1105I GACNNNNNGTC 1 cut(s) 100
EarI CTCTTC 3 cut(s) 128, 195, 1001
EciI GGCGGA 2 cut(s) 171, 573
Eco31I GGTCTC 1 cut(s) 198
Eco47I GGWCC 2 cut(s) 384, 695
Eco57I CTGAAG 2 cut(s) 152, 849
Eco91I GGTNACC 1 cut(s) 174
EcoNI CCTNNNNNAGG 1 cut(s) 831
EcoO65I GGTNACC 1 cut(s) 174
EcoRI GAATTC 2 cut(s) 657, 822
EcoRII CCWGG 1 cut(s) 691
Esp3I CGTCTC 1 cut(s) 197
FaeI CATG 1 cut(s) 95
FaiI YATR 5 cut(s) 93, 428, 464, 683, 1077
FatI CATG 1 cut(s) 91
FauI CCCGC 2 cut(s) 75, 641
FbaI TGATCA 2 cut(s) 514, 718
Fnu4HI GCNGC 3 cut(s) 556, 646, 920
FokI GGATG 3 cut(s) 131, 890, 1003
Fsp4HI GCNGC 3 cut(s) 556, 646, 920
FspBI CTAG 7 cut(s) 168, 402, 540, 798, 810, 906, 1113
GlaI GCGC 2 cut(s) 139, 213
GluI GCNGC 3 cut(s) 556, 646, 920
GsuI CTGGAG 1 cut(s) 693
HaeII RGCGCY 1 cut(s) 141
HapII CCGG 6 cut(s) 11, 41, 370, 382, 413, 708
HgaI GACGC 4 cut(s) 90, 144, 230, 589
HhaI GCGC 2 cut(s) 140, 214
Hin1I GRCGYC 1 cut(s) 581
Hin1II CATG 1 cut(s) 95
Hin6I GCGC 2 cut(s) 138, 212
HinP1I GCGC 2 cut(s) 138, 212
HincII GTYRAC 1 cut(s) 105
HindII GTYRAC 1 cut(s) 105
HindIII AAGCTT 1 cut(s) 1063
HinfI GANTC 6 cut(s) 14, 271, 322, 652, 736, 1028
HpaII CCGG 6 cut(s) 11, 41, 370, 382, 413, 708
HphI GGTGA 2 cut(s) 42, 949
Hpy166II GTNNAC 1 cut(s) 105
Hpy188I TCNGA 8 cut(s) 7, 21, 132, 663, 723, 765, 785, 1072
Hpy188III TCNNGA 7 cut(s) 11, 41, 92, 197, 370, 518, 827
Hpy8I GTNNAC 1 cut(s) 105
Hpy99I CGWCG 2 cut(s) 320, 583
HpyAV CCTTC 1 cut(s) 824
HpyCH4III ACNGT 2 cut(s) 254, 806
HpyCH4IV ACGT 2 cut(s) 318, 932
HpyCH4V TGCA 1 cut(s) 290
HpyF10VI GCNNNNNNNGC 1 cut(s) 302
HpySE526I ACGT 2 cut(s) 318, 932
Hsp92I GRCGYC 1 cut(s) 581
Hsp92II CATG 1 cut(s) 95
HspAI GCGC 2 cut(s) 138, 212
Kpn2I TCCGGA 3 cut(s) 10, 40, 369
KpnI GGTACC 1 cut(s) 382
Ksp22I TGATCA 2 cut(s) 514, 718
KspI CCGCGG 1 cut(s) 339
LguI GCTCTTC 1 cut(s) 128
LmnI GCTCC 5 cut(s) 64, 372, 569, 785, 1090
Lsp1109I GCAGC 1 cut(s) 906
LweI GCATC 1 cut(s) 88
MaeI CTAG 7 cut(s) 168, 402, 540, 798, 810, 906, 1113
MaeII ACGT 2 cut(s) 318, 932
MaeIII GTNAC 4 cut(s) 174, 350, 491, 800
MbiI CCGCTC 1 cut(s) 89
MboII GAAGA 8 cut(s) 72, 145, 212, 293, 877, 1018, 1114, 1117
MflI RGATCY 5 cut(s) 43, 127, 404, 614, 794
MluCI AATT 7 cut(s) 36, 216, 529, 548, 657, 822, 1041
MluI ACGCGT 1 cut(s) 222
MlyI GAGTC 1 cut(s) 745
MmeI TCCRAC 1 cut(s) 144
MroI TCCGGA 3 cut(s) 10, 40, 369
MseI TTAA 5 cut(s) 249, 327, 447, 483, 594
MslI CAYNNNNRTG 2 cut(s) 96, 522
MspA1I CMGCKG 3 cut(s) 338, 555, 611
MspCI CTTAAG 1 cut(s) 326
MspI CCGG 6 cut(s) 11, 41, 370, 382, 413, 708
MspR9I CCNGG 2 cut(s) 693, 708
MvaI CCWGG 1 cut(s) 693
MvnI CGCG 4 cut(s) 155, 212, 224, 338
MwoI GCNNNNNNNGC 1 cut(s) 302
NciI CCSGG 1 cut(s) 708
NlaIII CATG 1 cut(s) 95
NlaIV GGNNCC 2 cut(s) 45, 380
NmeAIII GCCGAG 1 cut(s) 609
NmuCI GTSAC 1 cut(s) 350
NspV TTCGAA 1 cut(s) 655
PagI TCATGA 1 cut(s) 91
PciSI GCTCTTC 1 cut(s) 128
PfeI GAWTC 5 cut(s) 14, 271, 322, 652, 1028
PflMI CCANNNNNTGG 1 cut(s) 746
PkrI GCNGC 3 cut(s) 557, 647, 921
Ple19I CGATCG 1 cut(s) 210
PleI GAGTC 1 cut(s) 744
PpsI GAGTC 1 cut(s) 744
Psp6I CCWGG 1 cut(s) 691
PspEI GGTNACC 1 cut(s) 174
PspGI CCWGG 1 cut(s) 691
PspN4I GGNNCC 2 cut(s) 45, 380
PspPI GGNCC 2 cut(s) 384, 695
PsuI RGATCY 5 cut(s) 43, 127, 404, 614, 794
PvuI CGATCG 1 cut(s) 210
PvuII CAGCTG 1 cut(s) 611
RsaI GTAC 4 cut(s) 227, 242, 380, 607
RsaNI GTAC 4 cut(s) 226, 241, 379, 606
RseI CAYNNNNRTG 2 cut(s) 96, 522
Rsr2I CGGWCCG 1 cut(s) 384
RsrII CGGWCCG 1 cut(s) 384
SacII CCGCGG 1 cut(s) 339
SapI GCTCTTC 1 cut(s) 128
SaqAI TTAA 5 cut(s) 249, 327, 447, 483, 594
SatI GCNGC 3 cut(s) 556, 646, 920
Sau96I GGNCC 2 cut(s) 384, 695
SchI GAGTC 1 cut(s) 745
ScrFI CCNGG 2 cut(s) 693, 708
SfaNI GCATC 1 cut(s) 88
Sfr303I CCGCGG 1 cut(s) 339
SfuI TTCGAA 1 cut(s) 655
SgrBI CCGCGG 1 cut(s) 339
SinI GGWCC 2 cut(s) 384, 695
SmiMI CAYNNNNRTG 2 cut(s) 96, 522
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
Sse9I AATT 7 cut(s) 36, 216, 529, 548, 657, 822, 1041
SspMI CTAG 7 cut(s) 168, 402, 540, 798, 810, 906, 1113
StyD4I CCNGG 2 cut(s) 691, 706
TaaI ACNGT 2 cut(s) 254, 806
TaiI ACGT 2 cut(s) 321, 935
TaqI TCGA 1 cut(s) 655
TaqII GACCGA 2 cut(s) 401, 712
TasI AATT 7 cut(s) 36, 216, 529, 548, 657, 822, 1041
TauI GCSGC 2 cut(s) 558, 648
TfiI GAWTC 5 cut(s) 14, 271, 322, 652, 1028
Tru1I TTAA 5 cut(s) 249, 327, 447, 483, 594
Tru9I TTAA 5 cut(s) 249, 327, 447, 483, 594
TscAI CASTG 2 cut(s) 281, 350
TseFI GTSAC 1 cut(s) 350
TseI GCWGC 1 cut(s) 919
Tsp45I GTSAC 1 cut(s) 350
TspDTI ATGAA 4 cut(s) 38, 431, 878, 1019
TspGWI ACGGA 2 cut(s) 884, 1100
TspRI CASTG 2 cut(s) 281, 350
Van91I CCANNNNNTGG 1 cut(s) 746
Vha464I CTTAAG 1 cut(s) 326
VpaK11BI GGWCC 2 cut(s) 384, 695
XagI CCTNNNNNAGG 1 cut(s) 831
XapI RAATTY 2 cut(s) 657, 822
XspI CTAG 7 cut(s) 168, 402, 540, 798, 810, 906, 1113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.