Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031510.1

Orthogroup ID

OG0010006

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 598

Gene Structure 598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031510.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 598 bp

cgatgaggaggacgatcaggatcaggagttgtatgaggagttgaggtatgggtcgaatatgaagagtatgagtaagatgtataggaatggagttggggttggggttggggttggggggagtggcgggagcagtgttggaggtgggagtggtgggtttaggattaggattccgactggggttagtatagctcagcctgggaacaaggtttatccgaagatggatgcgaaattcgggttgaattcgcacccggggtcgcattcggggccgagttatgctactgctaaggtgatgagagagtgcaacaataattcaggggggagaagtggggggttggggaagagggagagggaaagagagagggagagagaccctgtcgcggagatggtgtcggcgattaaggttttgggagatgggtttgtgaggatggagcagatgaagatggagatggccagggagattgagaccatgcgaatggagatggagatgaagaggaccgagatgattttggagtcgcagcagaggattgtggaggcctttgcaaaggctgtatcggagaagaagaagaaggctaagagaatgccgtcgcctgaggcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

198

Amino Acids

21.76

Weight (kDa)

9.12

Isoelectric Point (pI)

53.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44730
fragaria_vesca	FvH4_7g09240 FvH4_7g09240
malus_domestica	MD02G1219900.v1.1 MD07G1097000.v1.1 MD07G1097300.v1.1
prunus_persica	Prupe.2G121200_v2.0.a1 Prupe.2G121200_v2.0.a1
pyrus_communis	pycom02g18070 pycom07g08010
rosa_chinensis	RchiOBHm_Chr1g0345291
rosa_laevigata	RLG00000028841
rosa_multiflora	Rmu_sc0002329.1_g000011 Rmu_sc0031510.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309130
rosa_rugosa	Rorug01G0177200
rosa_samantha	Rh1AG195300 Rh1BG161400 Rh1CG179700 Rh1DG191800
rosa_wichuraiana	Rw1G016090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	378
AciI	CCGC	2 cut(s)	124, 378
AclWI	GGATC	1 cut(s)	28
AcoI	YGGCCR	1 cut(s)	448
AcsI	RAATTY	2 cut(s)	228, 239
AfiI	CCNNNNNNNGG	1 cut(s)	377
AgsI	TTSAA	1 cut(s)	239
AjnI	CCWGG	2 cut(s)	194, 450
AluBI	AGCT	1 cut(s)	189
AluI	AGCT	1 cut(s)	189
Alw26I	GTCTC	2 cut(s)	361, 456
AlwI	GGATC	1 cut(s)	28
Ama87I	CYCGRG	1 cut(s)	248
AoxI	GGCC	3 cut(s)	264, 448, 532
ApeKI	GCWGC	1 cut(s)	515
ApoI	RAATTY	2 cut(s)	228, 239
AspS9I	GGNCC	2 cut(s)	264, 493
AsuC2I	CCSGG	2 cut(s)	249, 250
AsuHPI	GGTGA	1 cut(s)	299
AvaI	CYCGRG	1 cut(s)	248
AvaII	GGWCC	1 cut(s)	493
AxyI	CCTNAGG	1 cut(s)	589
BalI	TGGCCA	1 cut(s)	450
BbvI	GCAGC	1 cut(s)	527
BccI	CCATC	7 cut(s)	212, 377, 405, 419, 434, 440, 473
BceAI	ACGGC	1 cut(s)	566
BciT130I	CCWGG	2 cut(s)	196, 452
BcnI	CCSGG	2 cut(s)	249, 250
BcoDI	GTCTC	2 cut(s)	361, 456
BisI	GCNGC	1 cut(s)	516
BlpI	GCTNAGC	1 cut(s)	190
BlsI	GCNGC	1 cut(s)	517
Bme1390I	CCNGG	4 cut(s)	196, 249, 250, 452
Bme18I	GGWCC	1 cut(s)	493
BmeT110I	CYCGRG	1 cut(s)	248
BmgT120I	GGNCC	2 cut(s)	264, 493
BmiI	GGNNCC	1 cut(s)	265
BmrFI	CCNGG	4 cut(s)	196, 249, 250, 452
BmrI	ACTGGG	1 cut(s)	184
BmsI	GCATC	1 cut(s)	212
BmuI	ACTGGG	1 cut(s)	184
Bpu10I	CCTNAGC	1 cut(s)	283
Bpu1102I	GCTNAGC	1 cut(s)	190
BpuMI	CCSGG	2 cut(s)	249, 250
BsaBI	GATNNNNATC	1 cut(s)	19
BsaI	GGTCTC	2 cut(s)	361, 456
BsaJI	CCNNGG	4 cut(s)	195, 248, 249, 451
BsaXI	ACNNNNNCTCC	6 cut(s)	30, 60, 82, 112, 372, 402
Bsc4I	CCNNNNNNNGG	1 cut(s)	377
Bse1I	ACTGG	1 cut(s)	179
Bse21I	CCTNAGG	1 cut(s)	589
Bse8I	GATNNNNATC	1 cut(s)	19
BseBI	CCWGG	2 cut(s)	196, 452
BseDI	CCNNGG	4 cut(s)	195, 248, 249, 451
BseGI	GGATG	2 cut(s)	227, 430
BseJI	GATNNNNATC	1 cut(s)	19
BseLI	CCNNNNNNNGG	1 cut(s)	377
BseMII	CTCAG	2 cut(s)	204, 580
BseNI	ACTGG	1 cut(s)	179
BseRI	GAGGAG	2 cut(s)	21, 51
BseXI	GCAGC	1 cut(s)	527
Bsh1236I	CGCG	1 cut(s)	378
BshFI	GGCC	3 cut(s)	266, 450, 534
BsiHKCI	CYCGRG	1 cut(s)	248
BsiSI	CCGG	1 cut(s)	249
BslI	CCNNNNNNNGG	1 cut(s)	377
BsmAI	GTCTC	2 cut(s)	361, 456
BsmI	GAATGC	2 cut(s)	257, 583
BsnI	GGCC	3 cut(s)	266, 450, 534
Bso31I	GGTCTC	2 cut(s)	361, 456
BsoBI	CYCGRG	1 cut(s)	248
Bsp143I	GATC	2 cut(s)	14, 20
Bsp1720I	GCTNAGC	1 cut(s)	190
BspACI	CCGC	2 cut(s)	124, 378
BspANI	GGCC	3 cut(s)	266, 450, 534
BspCNI	CTCAG	2 cut(s)	203, 581
BspFNI	CGCG	1 cut(s)	378
BspLI	GGNNCC	1 cut(s)	265
BspPI	GGATC	1 cut(s)	28
BspTNI	GGTCTC	2 cut(s)	361, 456
BsrI	ACTGG	1 cut(s)	179
BssECI	CCNNGG	4 cut(s)	195, 248, 249, 451
BssMI	GATC	2 cut(s)	14, 20
Bst2UI	CCWGG	2 cut(s)	196, 452
Bst6I	CTCTTC	3 cut(s)	57, 333, 483
BstDEI	CTNAG	5 cut(s)	190, 283, 571, 589, 595
BstF5I	GGATG	2 cut(s)	227, 430
BstFNI	CGCG	1 cut(s)	378
BstKTI	GATC	2 cut(s)	17, 23
BstMAI	GTCTC	2 cut(s)	361, 456
BstMBI	GATC	2 cut(s)	14, 20
BstMWI	GCNNNNNNNGC	1 cut(s)	263
BstNI	CCWGG	2 cut(s)	196, 452
BstSCI	CCNGG	4 cut(s)	194, 247, 248, 450
BstUI	CGCG	1 cut(s)	378
BstV1I	GCAGC	1 cut(s)	527
BstXI	CCANNNNNNTGG	1 cut(s)	473
Bsu36I	CCTNAGG	1 cut(s)	589
BsuRI	GGCC	3 cut(s)	266, 450, 534
BtsCI	GGATG	2 cut(s)	227, 430
BtsI	GCAGTG	1 cut(s)	137
BtsIMutI	CAGTG	1 cut(s)	137
Cfr13I	GGNCC	2 cut(s)	264, 493
Cfr9I	CCCGGG	1 cut(s)	248
CviAII	CATG	1 cut(s)	467
CviJI	RGCY	8 cut(s)	189, 194, 266, 450, 534, 546, 570, 594
CviKI_1	RGCY	8 cut(s)	189, 194, 266, 450, 534, 546, 570, 594
DdeI	CTNAG	5 cut(s)	190, 283, 571, 589, 595
DpnI	GATC	2 cut(s)	16, 22
DpnII	GATC	2 cut(s)	14, 20
EaeI	YGGCCR	1 cut(s)	448
Eam1104I	CTCTTC	3 cut(s)	57, 333, 483
EarI	CTCTTC	3 cut(s)	57, 333, 483
Eco147I	AGGCCT	1 cut(s)	534
Eco31I	GGTCTC	2 cut(s)	361, 456
Eco47I	GGWCC	1 cut(s)	493
Eco81I	CCTNAGG	1 cut(s)	589
Eco88I	CYCGRG	1 cut(s)	248
EcoRI	GAATTC	1 cut(s)	239
EcoRII	CCWGG	2 cut(s)	194, 450
FaeI	CATG	1 cut(s)	470
FaiI	YATR	8 cut(s)	34, 49, 60, 69, 82, 186, 274, 468
FatI	CATG	1 cut(s)	466
FauI	CCCGC	1 cut(s)	117
Fnu4HI	GCNGC	1 cut(s)	516
FokI	GGATG	2 cut(s)	234, 437
Fsp4HI	GCNGC	1 cut(s)	516
GluI	GCNGC	1 cut(s)	516
HaeIII	GGCC	3 cut(s)	266, 450, 534
HapII	CCGG	1 cut(s)	249
Hin1II	CATG	1 cut(s)	470
HinfI	GANTC	2 cut(s)	167, 510
HpaII	CCGG	1 cut(s)	249
HphI	GGTGA	1 cut(s)	299
Hpy188I	TCNGA	3 cut(s)	172, 214, 554
Hpy188III	TCNNGA	2 cut(s)	18, 24
Hpy99I	CGWCG	1 cut(s)	587
HpyAV	CCTTC	1 cut(s)	560
HpyCH4V	TGCA	2 cut(s)	301, 540
HpyF10VI	GCNNNNNNNGC	1 cut(s)	263
HpyF3I	CTNAG	5 cut(s)	190, 283, 571, 589, 595
Hsp92II	CATG	1 cut(s)	470
Kzo9I	GATC	2 cut(s)	14, 20
LmnI	GCTCC	2 cut(s)	127, 428
Lsp1109I	GCAGC	1 cut(s)	527
LweI	GCATC	1 cut(s)	212
MalI	GATC	2 cut(s)	16, 22
MboI	GATC	2 cut(s)	14, 20
MboII	GAAGA	8 cut(s)	74, 227, 350, 449, 500, 569, 572, 575
MlsI	TGGCCA	1 cut(s)	450
MluCI	AATT	3 cut(s)	228, 239, 308
MluNI	TGGCCA	1 cut(s)	450
MlyI	GAGTC	1 cut(s)	519
MmeI	TCCRAC	2 cut(s)	116, 195
Mox20I	TGGCCA	1 cut(s)	450
MscI	TGGCCA	1 cut(s)	450
MseI	TTAA	1 cut(s)	397
MslI	CAYNNNNRTG	1 cut(s)	471
Msp20I	TGGCCA	1 cut(s)	450
MspI	CCGG	1 cut(s)	249
MspR9I	CCNGG	4 cut(s)	196, 249, 250, 452
Mva1269I	GAATGC	2 cut(s)	257, 583
MvaI	CCWGG	2 cut(s)	196, 452
MvnI	CGCG	1 cut(s)	378
MwoI	GCNNNNNNNGC	1 cut(s)	263
NciI	CCSGG	2 cut(s)	249, 250
NdeII	GATC	2 cut(s)	14, 20
NlaIII	CATG	1 cut(s)	470
NlaIV	GGNNCC	1 cut(s)	265
NmeAIII	GCCGAG	1 cut(s)	292
PceI	AGGCCT	1 cut(s)	534
PctI	GAATGC	2 cut(s)	257, 583
PfeI	GAWTC	1 cut(s)	167
PflFI	GACNNNGTC	1 cut(s)	372
PkrI	GCNGC	1 cut(s)	517
PleI	GAGTC	1 cut(s)	518
PpsI	GAGTC	1 cut(s)	518
Psp6I	CCWGG	2 cut(s)	194, 450
PspGI	CCWGG	2 cut(s)	194, 450
PspN4I	GGNNCC	1 cut(s)	265
PspPI	GGNCC	2 cut(s)	264, 493
PsyI	GACNNNGTC	1 cut(s)	372
RseI	CAYNNNNRTG	1 cut(s)	471
SaqAI	TTAA	1 cut(s)	397
SatI	GCNGC	1 cut(s)	516
Sau3AI	GATC	2 cut(s)	14, 20
Sau96I	GGNCC	2 cut(s)	264, 493
SchI	GAGTC	1 cut(s)	519
ScrFI	CCNGG	4 cut(s)	196, 249, 250, 452
SetI	ASST	6 cut(s)	48, 143, 191, 208, 289, 403
SfaNI	GCATC	1 cut(s)	212
SinI	GGWCC	1 cut(s)	493
SmaI	CCCGGG	1 cut(s)	250
SmiMI	CAYNNNNRTG	1 cut(s)	471
Sse9I	AATT	3 cut(s)	228, 239, 308
SseBI	AGGCCT	1 cut(s)	534
SsiI	CCGC	2 cut(s)	124, 378
StuI	AGGCCT	1 cut(s)	534
StyD4I	CCNGG	4 cut(s)	194, 247, 248, 450
TaqI	TCGA	1 cut(s)	54
TaqII	GACCGA	1 cut(s)	510
TasI	AATT	3 cut(s)	228, 239, 308
TfiI	GAWTC	1 cut(s)	167
Tru1I	TTAA	1 cut(s)	397
Tru9I	TTAA	1 cut(s)	397
TscAI	CASTG	1 cut(s)	137
TseI	GCWGC	1 cut(s)	515
TspDTI	ATGAA	3 cut(s)	75, 450, 501
TspMI	CCCGGG	1 cut(s)	248
TspRI	CASTG	1 cut(s)	137
Tth111I	GACNNNGTC	1 cut(s)	372
VpaK11BI	GGWCC	1 cut(s)	493
XapI	RAATTY	2 cut(s)	228, 239
XmaI	CCCGGG	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.