Rw1G016090
MYB Family

Alcohol dehydrogenase transcription factor Myb/SANT-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
35791307 .. 35793112
1806 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G016090.1

Sequence Viewer

Length: 1101 bp
ATGGCTTCTTCCCCTCCCTCTTCTCCCCAAGACGACGCCCTCATTCCTCTCCAGTCCGATCCGCCGCAGGCCGTCCCCCTCGCCCTCCCCGCCCCTCCTCCGCCGCAGCTCACTCCGTCCTCGGCGCCTCCTCCCTCCTCCCGCCGCCTCCCCCCTCCCTGCTGGTCCCACGACGAGACCGTCGCCCTCATCGACTCCTACCGCGACAAGTGGTACTCCCTCCGCCGCGGCAACCTCAAGGCCACGCACTGGCAGGACGTCGCCGACGCCGTCTCCCGCCGATGCCCGGCCGCGTCACCGGCCAAGACCGCCGTCCAGTGCCGCCATAAGATGGAGAAGCTCCGGAAGCGGTACCGGACCGAGATCCAGCGGGCCAAGTCGATGCCCTTGTCCAGGTTCACGTCTTCTTGGGTCCACTTCAAGAGAATGGACGCCATGGAGAAAGGTCCGGCGGCTTTGAAGAACGAGAATTCGGATAGTCCCGGCGACGACGGCGAGGATGAGGAGAACGATGAGGAGGACGATCAGGATCAGGAGTTGTATGAGGAGTTGAGGTATGGGTCGAATATGAAGAGTATGAGTAAGATGTATAGGAATGGAGTTGGGGTTGGGGTTGGGGGGAGTGGCGGGAGCAGTGTTGGTGGTGGGAGTGGTGGGTTTAGGATTAGGATTCCGACTGGGGTTAGTATAGCTCAGCCTGGGAACAAGGTTTATCCGAAGATGGATGCGAAATTCGGGTTGAATTCGCACCCGGGGTCGCATTCGGGGCCGAGTTATGCTACTGCTAAGGTGATGAGAGAGTGCAATAATAATGCAGGGGGGAGAAGTGGGGGGTTGGGGAAGAGGGAGAGGGAAAGAGAGAGGGAGAGAGACCCTGTGGCGGAGATGGTCTCGGCGATTAAGGTTTTGGGAGATGGATTTGTGAGGATGGAGCAGATGAAGATGGAGATGGCCAGGGAGATTGAGACTATGAGAATGGAGATGGAGATGAAGAGGACCGAGATGATTTTGGAGTCGCAGCAGCGGATTGTGGAGGCTTTCGCAAAGGCTGTATCGGAGAAGAAGAAGAAGGCTAAGAGAATGCCGTCGCCTGAGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

366

Amino Acids

40.46

Weight (kDa)

9.09

Isoelectric Point (pI)

69.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 53 - 146 1.1e-17 Myb/SANT-like DNA-binding domain
MADF_DNA_bdg PF10545 75 - 145 3.6e-09 Alcohol dehydrogenase transcription factor Myb/SANT-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 179
AatII GACGTC 1 cut(s) 261
Acc65I GGTACC 1 cut(s) 351
AccB1I GGYRCC 2 cut(s) 124, 351
AccB7I CCANNNNNTGG 2 cut(s) 249, 331
AccII CGCG 3 cut(s) 204, 228, 293
AccIII TCCGGA 1 cut(s) 342
AclWI GGATC 3 cut(s) 53, 358, 537
AcoI YGGCCR 3 cut(s) 288, 300, 951
AcsI RAATTY 3 cut(s) 469, 731, 742
AcyI GRCGYC 5 cut(s) 36, 125, 258, 267, 432
AfaI GTAC 2 cut(s) 215, 353
AfiI CCNNNNNNNGG 5 cut(s) 249, 286, 331, 393, 880
AgsI TTSAA 3 cut(s) 421, 460, 742
AjiI CACGTC 1 cut(s) 402
AjnI CCWGG 3 cut(s) 392, 697, 953
AluBI AGCT 3 cut(s) 109, 340, 692
AluI AGCT 3 cut(s) 109, 340, 692
Alw26I GTCTC 5 cut(s) 170, 277, 864, 895, 959
AlwI GGATC 3 cut(s) 53, 358, 537
Ama87I CYCGRG 1 cut(s) 751
Aor13HI TCCGGA 1 cut(s) 342
AoxI GGCC 7 cut(s) 69, 240, 288, 300, 372, 767, 951
ApeKI GCWGC 3 cut(s) 106, 1018, 1021
ApoI RAATTY 3 cut(s) 469, 731, 742
Asp718I GGTACC 1 cut(s) 351
AspLEI GCGC 1 cut(s) 127
AspS9I GGNCC 7 cut(s) 165, 357, 372, 412, 446, 767, 996
AsuC2I CCSGG 4 cut(s) 287, 483, 752, 753
AsuHPI GGTGA 2 cut(s) 288, 802
AvaI CYCGRG 1 cut(s) 751
AvaII GGWCC 5 cut(s) 165, 357, 412, 446, 996
AxyI CCTNAGG 1 cut(s) 1092
BalI TGGCCA 1 cut(s) 953
BanI GGYRCC 2 cut(s) 124, 351
BbsI GAAGAC 1 cut(s) 396
BbvI GCAGC 3 cut(s) 118, 1030, 1033
BccI CCATC 8 cut(s) 325, 715, 880, 908, 922, 937, 943, 976
BceAI ACGGC 5 cut(s) 56, 254, 296, 508, 1069
BciT130I CCWGG 3 cut(s) 394, 699, 955
BcnI CCSGG 4 cut(s) 287, 483, 752, 753
BcoDI GTCTC 5 cut(s) 170, 277, 864, 895, 959
BfoI RGCGCY 1 cut(s) 128
BlpI GCTNAGC 1 cut(s) 693
Bme1390I CCNGG 7 cut(s) 287, 394, 483, 699, 752, 753, 955
Bme18I GGWCC 5 cut(s) 165, 357, 412, 446, 996
BmeT110I CYCGRG 1 cut(s) 751
BmgBI CACGTC 1 cut(s) 402
BmgT120I GGNCC 7 cut(s) 165, 357, 372, 412, 446, 767, 996
BmiI GGNNCC 5 cut(s) 126, 167, 353, 413, 768
BmrFI CCNGG 7 cut(s) 287, 394, 483, 699, 752, 753, 955
BmrI ACTGGG 1 cut(s) 687
BmsI GCATC 3 cut(s) 272, 372, 715
BmuI ACTGGG 1 cut(s) 687
BoxI GACNNNNGTC 1 cut(s) 311
BpiI GAAGAC 1 cut(s) 396
BplI GAGNNNNNCTC 2 cut(s) 875, 907
BpmI CTGGAG 1 cut(s) 35
Bpu10I CCTNAGC 1 cut(s) 786
Bpu1102I GCTNAGC 1 cut(s) 693
BpuEI CTTGAG 1 cut(s) 221
BpuMI CCSGG 4 cut(s) 287, 483, 752, 753
BsaBI GATNNNNATC 1 cut(s) 528
BsaHI GRCGYC 5 cut(s) 36, 125, 258, 267, 432
BsaI GGTCTC 3 cut(s) 170, 864, 895
BsaJI CCNNGG 7 cut(s) 120, 226, 435, 698, 751, 752, 954
BsaWI WCCGGW 2 cut(s) 342, 354
BsaXI ACNNNNNCTCC 6 cut(s) 257, 287, 539, 569, 591, 621
Bsc4I CCNNNNNNNGG 5 cut(s) 249, 286, 331, 393, 880
Bse118I RCCGGY 1 cut(s) 298
Bse1I ACTGG 4 cut(s) 52, 254, 316, 682
Bse21I CCTNAGG 1 cut(s) 1092
Bse8I GATNNNNATC 1 cut(s) 528
BseAI TCCGGA 1 cut(s) 342
BseBI CCWGG 3 cut(s) 394, 699, 955
BseDI CCNNGG 7 cut(s) 120, 226, 435, 698, 751, 752, 954
BseGI GGATG 3 cut(s) 505, 730, 933
BseJI GATNNNNATC 1 cut(s) 528
BseLI CCNNNNNNNGG 5 cut(s) 249, 286, 331, 393, 880
BseMII CTCAG 2 cut(s) 707, 1083
BseNI ACTGG 4 cut(s) 52, 254, 316, 682
BseRI GAGGAG 6 cut(s) 87, 120, 127, 518, 530, 560
BseX3I CGGCCG 1 cut(s) 288
BseXI GCAGC 3 cut(s) 118, 1030, 1033
Bsh1236I CGCG 3 cut(s) 204, 228, 293
Bsh1285I CGRYCG 1 cut(s) 291
BshFI GGCC 7 cut(s) 71, 242, 290, 302, 374, 769, 953
BshNI GGYRCC 2 cut(s) 124, 351
BsiEI CGRYCG 1 cut(s) 291
BsiHKCI CYCGRG 1 cut(s) 751
BsiSI CCGG 7 cut(s) 287, 299, 343, 355, 449, 483, 752
BslFI GGGAC 3 cut(s) 59, 151, 465
BslI CCNNNNNNNGG 5 cut(s) 249, 286, 331, 393, 880
BsmAI GTCTC 5 cut(s) 170, 277, 864, 895, 959
BsmBI CGTCTC 1 cut(s) 277
BsmFI GGGAC 3 cut(s) 59, 151, 465
BsmI GAATGC 2 cut(s) 760, 1086
BsnI GGCC 7 cut(s) 71, 242, 290, 302, 374, 769, 953
Bso31I GGTCTC 3 cut(s) 170, 864, 895
BsoBI CYCGRG 1 cut(s) 751
Bsp13I TCCGGA 1 cut(s) 342
Bsp143I GATC 4 cut(s) 58, 363, 523, 529
Bsp1720I GCTNAGC 1 cut(s) 693
Bsp19I CCATGG 1 cut(s) 435
BspANI GGCC 7 cut(s) 71, 242, 290, 302, 374, 769, 953
BspCNI CTCAG 2 cut(s) 706, 1084
BspEI TCCGGA 1 cut(s) 342
BspFNI CGCG 3 cut(s) 204, 228, 293
BspLI GGNNCC 5 cut(s) 126, 167, 353, 413, 768
BspPI GGATC 3 cut(s) 53, 358, 537
BspT107I GGYRCC 2 cut(s) 124, 351
BspTNI GGTCTC 3 cut(s) 170, 864, 895
BsrFI RCCGGY 1 cut(s) 298
BsrI ACTGG 4 cut(s) 52, 254, 316, 682
BssAI RCCGGY 1 cut(s) 298
BssECI CCNNGG 7 cut(s) 120, 226, 435, 698, 751, 752, 954
BssMI GATC 4 cut(s) 58, 363, 523, 529
BssNI GRCGYC 5 cut(s) 36, 125, 258, 267, 432
BssT1I CCWWGG 1 cut(s) 435
Bst2UI CCWGG 3 cut(s) 394, 699, 955
Bst4CI ACNGT 1 cut(s) 181
Bst6I CTCTTC 4 cut(s) 25, 566, 836, 986
BstACI GRCGYC 5 cut(s) 36, 125, 258, 267, 432
BstC8I GCNNGC 2 cut(s) 69, 372
BstDEI CTNAG 5 cut(s) 693, 786, 1074, 1092, 1098
BstDSI CCRYGG 2 cut(s) 226, 435
BstENI CCTNNNNNAGG 1 cut(s) 391
BstF5I GGATG 3 cut(s) 505, 730, 933
BstFNI CGCG 3 cut(s) 204, 228, 293
BstH2I RGCGCY 1 cut(s) 128
BstHHI GCGC 1 cut(s) 127
BstKTI GATC 4 cut(s) 61, 366, 526, 532
BstMAI GTCTC 5 cut(s) 170, 277, 864, 895, 959
BstMBI GATC 4 cut(s) 58, 363, 523, 529
BstMCI CGRYCG 1 cut(s) 291
BstMWI GCNNNNNNNGC 6 cut(s) 89, 299, 308, 346, 492, 766
BstNI CCWGG 3 cut(s) 394, 699, 955
BstPAI GACNNNNGTC 1 cut(s) 311
BstSCI CCNGG 7 cut(s) 285, 392, 481, 697, 750, 751, 953
BstUI CGCG 3 cut(s) 204, 228, 293
BstV1I GCAGC 3 cut(s) 118, 1030, 1033
BstV2I GAAGAC 1 cut(s) 396
BstX2I RGATCY 1 cut(s) 363
BstYI RGATCY 1 cut(s) 363
BstZI CGGCCG 1 cut(s) 288
Bsu36I CCTNAGG 1 cut(s) 1092
BsuRI GGCC 7 cut(s) 71, 242, 290, 302, 374, 769, 953
BtgI CCRYGG 2 cut(s) 226, 435
BtrI CACGTC 1 cut(s) 402
BtsCI GGATG 3 cut(s) 505, 730, 933
BtsI GCAGTG 1 cut(s) 640
BtsIMutI CAGTG 3 cut(s) 247, 323, 640
Cac8I GCNNGC 2 cut(s) 69, 372
CfoI GCGC 1 cut(s) 127
Cfr10I RCCGGY 1 cut(s) 298
Cfr13I GGNCC 7 cut(s) 165, 357, 372, 412, 446, 767, 996
Cfr42I CCGCGG 1 cut(s) 229
Cfr9I CCCGGG 1 cut(s) 751
CpoI CGGWCCG 1 cut(s) 357
CseI GACGC 4 cut(s) 44, 275, 282, 440
Csp6I GTAC 2 cut(s) 214, 352
CspI CGGWCCG 1 cut(s) 357
CviAII CATG 1 cut(s) 436
CviQI GTAC 2 cut(s) 214, 352
DdeI CTNAG 5 cut(s) 693, 786, 1074, 1092, 1098
DinI GGCGCC 1 cut(s) 126
DpnI GATC 4 cut(s) 60, 365, 525, 531
DpnII GATC 4 cut(s) 58, 363, 523, 529
DrdI GACNNNNNNGTC 1 cut(s) 179
DseDI GACNNNNNNGTC 1 cut(s) 179
EaeI YGGCCR 3 cut(s) 288, 300, 951
EagI CGGCCG 1 cut(s) 288
Eam1104I CTCTTC 4 cut(s) 25, 566, 836, 986
EarI CTCTTC 4 cut(s) 25, 566, 836, 986
EciI GGCGGA 4 cut(s) 51, 90, 212, 896
EclXI CGGCCG 1 cut(s) 288
Eco130I CCWWGG 1 cut(s) 435
Eco31I GGTCTC 3 cut(s) 170, 864, 895
Eco47I GGWCC 5 cut(s) 165, 357, 412, 446, 996
Eco52I CGGCCG 1 cut(s) 288
Eco81I CCTNAGG 1 cut(s) 1092
Eco88I CYCGRG 1 cut(s) 751
EcoNI CCTNNNNNAGG 1 cut(s) 391
EcoRI GAATTC 2 cut(s) 469, 742
EcoRII CCWGG 3 cut(s) 392, 697, 953
EcoT14I CCWWGG 1 cut(s) 435
EgeI GGCGCC 1 cut(s) 126
EheI GGCGCC 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 435
Esp3I CGTCTC 1 cut(s) 277
FaeI CATG 1 cut(s) 439
FaqI GGGAC 3 cut(s) 59, 151, 465
FatI CATG 1 cut(s) 435
FauI CCCGC 5 cut(s) 97, 149, 284, 363, 620
FokI GGATG 3 cut(s) 512, 737, 940
GlaI GCGC 1 cut(s) 126
GsuI CTGGAG 1 cut(s) 35
HaeII RGCGCY 1 cut(s) 128
HaeIII GGCC 7 cut(s) 71, 242, 290, 302, 374, 769, 953
HapII CCGG 7 cut(s) 287, 299, 343, 355, 449, 483, 752
HgaI GACGC 4 cut(s) 44, 275, 282, 440
HhaI GCGC 1 cut(s) 127
Hin1I GRCGYC 5 cut(s) 36, 125, 258, 267, 432
Hin1II CATG 1 cut(s) 439
Hin6I GCGC 1 cut(s) 125
HinP1I GCGC 1 cut(s) 125
HinfI GANTC 3 cut(s) 194, 670, 1013
HpaII CCGG 7 cut(s) 287, 299, 343, 355, 449, 483, 752
HphI GGTGA 2 cut(s) 288, 802
Hpy166II GTNNAC 2 cut(s) 399, 415
Hpy188I TCNGA 5 cut(s) 58, 475, 675, 717, 1057
Hpy188III TCNNGA 4 cut(s) 343, 421, 527, 533
Hpy8I GTNNAC 2 cut(s) 399, 415
Hpy99I CGWCG 8 cut(s) 38, 176, 185, 263, 269, 491, 494, 1090
HpyAV CCTTC 1 cut(s) 1063
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4IV ACGT 2 cut(s) 258, 401
HpyCH4V TGCA 2 cut(s) 804, 815
HpyF10VI GCNNNNNNNGC 6 cut(s) 89, 299, 308, 346, 492, 766
HpyF3I CTNAG 5 cut(s) 693, 786, 1074, 1092, 1098
HpySE526I ACGT 2 cut(s) 258, 401
Hsp92I GRCGYC 5 cut(s) 36, 125, 258, 267, 432
Hsp92II CATG 1 cut(s) 439
HspAI GCGC 1 cut(s) 125
KasI GGCGCC 1 cut(s) 124
Kpn2I TCCGGA 1 cut(s) 342
KpnI GGTACC 1 cut(s) 355
KspI CCGCGG 1 cut(s) 229
Kzo9I GATC 4 cut(s) 58, 363, 523, 529
LmnI GCTCC 3 cut(s) 345, 630, 931
Lsp1109I GCAGC 3 cut(s) 118, 1030, 1033
LweI GCATC 3 cut(s) 272, 372, 715
MaeII ACGT 2 cut(s) 258, 401
MaeIII GTNAC 1 cut(s) 294
MalI GATC 4 cut(s) 60, 365, 525, 531
MboI GATC 4 cut(s) 58, 363, 523, 529
MflI RGATCY 1 cut(s) 363
MlsI TGGCCA 1 cut(s) 953
MluCI AATT 3 cut(s) 469, 731, 742
MluNI TGGCCA 1 cut(s) 953
Mly113I GGCGCC 1 cut(s) 125
MlyI GAGTC 2 cut(s) 188, 1022
MmeI TCCRAC 1 cut(s) 698
Mox20I TGGCCA 1 cut(s) 953
MroI TCCGGA 1 cut(s) 342
MscI TGGCCA 1 cut(s) 953
MseI TTAA 1 cut(s) 900
Msp20I TGGCCA 1 cut(s) 953
MspA1I CMGCKG 3 cut(s) 228, 370, 1024
MspI CCGG 7 cut(s) 287, 299, 343, 355, 449, 483, 752
MspR9I CCNGG 7 cut(s) 287, 394, 483, 699, 752, 753, 955
Mva1269I GAATGC 2 cut(s) 760, 1086
MvaI CCWGG 3 cut(s) 394, 699, 955
MvnI CGCG 3 cut(s) 204, 228, 293
MwoI GCNNNNNNNGC 6 cut(s) 89, 299, 308, 346, 492, 766
NarI GGCGCC 1 cut(s) 125
NciI CCSGG 4 cut(s) 287, 483, 752, 753
NcoI CCATGG 1 cut(s) 435
NdeII GATC 4 cut(s) 58, 363, 523, 529
NlaIII CATG 1 cut(s) 439
NlaIV GGNNCC 5 cut(s) 126, 167, 353, 413, 768
NmeAIII GCCGAG 3 cut(s) 101, 795, 872
NmuCI GTSAC 1 cut(s) 294
PcsI WCGNNNNNNNCGW 3 cut(s) 177, 189, 267
PctI GAATGC 2 cut(s) 760, 1086
PfeI GAWTC 1 cut(s) 670
PflFI GACNNNGTC 1 cut(s) 269
PflMI CCANNNNNTGG 2 cut(s) 249, 331
PleI GAGTC 2 cut(s) 188, 1021
PluTI GGCGCC 1 cut(s) 128
PpsI GAGTC 2 cut(s) 188, 1021
PshAI GACNNNNGTC 1 cut(s) 311
Psp6I CCWGG 3 cut(s) 392, 697, 953
PspGI CCWGG 3 cut(s) 392, 697, 953
PspN4I GGNNCC 5 cut(s) 126, 167, 353, 413, 768
PspPI GGNCC 7 cut(s) 165, 357, 372, 412, 446, 767, 996
PsuI RGATCY 1 cut(s) 363
PsyI GACNNNGTC 1 cut(s) 269
RsaI GTAC 2 cut(s) 215, 353
RsaNI GTAC 2 cut(s) 214, 352
Rsr2I CGGWCCG 1 cut(s) 357
RsrII CGGWCCG 1 cut(s) 357
SacII CCGCGG 1 cut(s) 229
SaqAI TTAA 1 cut(s) 900
Sau3AI GATC 4 cut(s) 58, 363, 523, 529
Sau96I GGNCC 7 cut(s) 165, 357, 372, 412, 446, 767, 996
SchI GAGTC 2 cut(s) 188, 1022
ScrFI CCNGG 7 cut(s) 287, 394, 483, 699, 752, 753, 955
SfaNI GCATC 3 cut(s) 272, 372, 715
SfoI GGCGCC 1 cut(s) 126
Sfr303I CCGCGG 1 cut(s) 229
SgrBI CCGCGG 1 cut(s) 229
SinI GGWCC 5 cut(s) 165, 357, 412, 446, 996
SmaI CCCGGG 1 cut(s) 753
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
Sse9I AATT 3 cut(s) 469, 731, 742
SspDI GGCGCC 1 cut(s) 124
StyD4I CCNGG 7 cut(s) 285, 392, 481, 697, 750, 751, 953
StyI CCWWGG 1 cut(s) 435
TaaI ACNGT 1 cut(s) 181
TaiI ACGT 2 cut(s) 261, 404
TaqI TCGA 3 cut(s) 192, 380, 563
TaqII GACCGA 2 cut(s) 374, 1013
TasI AATT 3 cut(s) 469, 731, 742
TauI GCSGC 8 cut(s) 67, 106, 147, 228, 231, 293, 324, 455
TfiI GAWTC 1 cut(s) 670
Tru1I TTAA 1 cut(s) 900
Tru9I TTAA 1 cut(s) 900
TscAI CASTG 3 cut(s) 254, 323, 640
TseFI GTSAC 1 cut(s) 294
TseI GCWGC 3 cut(s) 106, 1018, 1021
Tsp45I GTSAC 1 cut(s) 294
TspDTI ATGAA 3 cut(s) 584, 953, 1004
TspGWI ACGGA 1 cut(s) 105
TspMI CCCGGG 1 cut(s) 751
TspRI CASTG 3 cut(s) 254, 323, 640
Tth111I GACNNNGTC 1 cut(s) 269
Van91I CCANNNNNTGG 2 cut(s) 249, 331
VpaK11BI GGWCC 5 cut(s) 165, 357, 412, 446, 996
XagI CCTNNNNNAGG 1 cut(s) 391
XapI RAATTY 3 cut(s) 469, 731, 742
XmaI CCCGGG 1 cut(s) 751
ZraI GACGTC 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.