RLG00000028841
MYB Family

Alcohol dehydrogenase transcription factor Myb/SANT-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
29072564 .. 29074571
2008 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028841

Sequence Viewer

Length: 1146 bp
ATGGGCAACATGACAGATGATGGTATCGCTGAAGCAAGGTGCTCCATGGCTTCTTCCCCTCCCTCTTCTCCCCAAGACGACGCCCTCATTCCTCTCCAGTCCGATCCGCCGCAGGCCGTCCCCCTCGCCCTCCCGGCCCCTCCTCCGCCGCAGCTCACTCCGGCCTCGGCGCCTCCTCCCTCCTCCCGCCGTCTCCCCCCTCCCTGCTGGTCCCACGATGAGACCGTCGCTCTCATCGACTCCTACCGCGACAAGTGGTACTCCCTCCGCCGCGGCAACCTCAAGGCCACGCACTGGCAGGACGTCGCCGACGCCGTCTCCCGCCGCTGTCCGGCCGCCTCCCCGGCCAAGACCGCCGTCCAGTGCCGCCATAAGATGGAGAAGCTCCGGAAGCGGTACCGGACCGAGATCCAGCGGGCCAAGTCGATGCCCTTGTCCAGGTTCACGTCTTCCTGGGTCCACTTCAAGAGAATGGACGCCATGGAGAAAGGTCCGGCGGCTTTGAAGAACGAGAATTCGGACAGTCCCGGCGAGGACGGTGAGGATGAGGAGAACGATGAGGAGGACGATCAGGATCAGGAGTTGTATGAGGAGTTGAGGTACGGGTCGAATATGAAGAGTATGAGTAAGATGTACAGGAATGGAGTTGGTGTTGGGGTTGGAGGGAGTGGTGGGAGCAGTGTTGGTGGCGGGAGTGGTGGGTTTAGGATTAGGATTCCGACTGGGGTTAGTATAGCTCAGCCTGGGAACAAGGTTTATCCGAAGATGGATGCGAAATTCGGGTTGAATTCGCACCCAGGGTCGCATTCGGGGCCGAGTTATGCTACTGCTAAGGTGATGAGAGAGTGCAATAATAATTCAGGGGGGAGAAGTGGGGGGTTGGGGAAGAGGGAGAGGGAACGAGAGAGGGAGAGAGACCCTGTGGCGGAGATGGTCTCGGCGATTAAGGTTTTGGGAGATGGGTTTGTGAGGATGGAGCAGATGAAGATGGAGATGGCCAGGGAGATTGAGACTATGAGAATGGAGATGGAGATGAAGAGGACCGAGATGATTTTGGAGTCGCAGCAGCGGATTGTGGAGGCCTTTGCAAAGGCTGTATCGGAGAAGAAGAAGAAGACTAAGAGAATGCCGTCGCCTGAGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

382

Amino Acids

42.06

Weight (kDa)

8.81

Isoelectric Point (pI)

66.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 68 - 161 1.2e-17 Myb/SANT-like DNA-binding domain
MADF_DNA_bdg PF10545 90 - 160 3.8e-09 Alcohol dehydrogenase transcription factor Myb/SANT-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 306
Acc65I GGTACC 1 cut(s) 396
AccB1I GGYRCC 2 cut(s) 169, 396
AccB7I CCANNNNNTGG 2 cut(s) 294, 376
AccII CGCG 2 cut(s) 249, 273
AccIII TCCGGA 1 cut(s) 387
AclWI GGATC 3 cut(s) 98, 403, 582
AcoI YGGCCR 3 cut(s) 333, 345, 996
AcsI RAATTY 3 cut(s) 514, 776, 787
AcuI CTGAAG 1 cut(s) 51
AcyI GRCGYC 5 cut(s) 81, 170, 303, 312, 477
AfaI GTAC 4 cut(s) 260, 398, 602, 635
AfiI CCNNNNNNNGG 5 cut(s) 294, 331, 376, 438, 925
AgsI TTSAA 3 cut(s) 466, 505, 787
AjiI CACGTC 1 cut(s) 447
AjnI CCWGG 5 cut(s) 437, 452, 742, 796, 998
AluBI AGCT 3 cut(s) 154, 385, 737
AluI AGCT 3 cut(s) 154, 385, 737
Alw21I GWGCWC 1 cut(s) 44
Alw26I GTCTC 6 cut(s) 197, 215, 322, 909, 940, 1004
AlwI GGATC 3 cut(s) 98, 403, 582
Aor13HI TCCGGA 1 cut(s) 387
ApeKI GCWGC 3 cut(s) 151, 1063, 1066
ApoI RAATTY 3 cut(s) 514, 776, 787
Asp718I GGTACC 1 cut(s) 396
AspLEI GCGC 1 cut(s) 172
AspS9I GGNCC 8 cut(s) 136, 210, 402, 417, 457, 491, 812, 1041
AsuC2I CCSGG 3 cut(s) 134, 344, 528
AsuHPI GGTGA 2 cut(s) 551, 847
AvaII GGWCC 5 cut(s) 210, 402, 457, 491, 1041
AxyI CCTNAGG 1 cut(s) 1137
BalI TGGCCA 1 cut(s) 998
BanI GGYRCC 2 cut(s) 169, 396
BbsI GAAGAC 2 cut(s) 441, 1121
Bbv12I GWGCWC 1 cut(s) 44
BbvI GCAGC 3 cut(s) 163, 1075, 1078
BccI CCATC 9 cut(s) 14, 370, 760, 925, 953, 967, 982, 988, 1021
BceAI ACGGC 5 cut(s) 101, 174, 299, 341, 1114
BciT130I CCWGG 5 cut(s) 439, 454, 744, 798, 1000
BcnI CCSGG 3 cut(s) 134, 344, 528
BcoDI GTCTC 6 cut(s) 197, 215, 322, 909, 940, 1004
BfoI RGCGCY 1 cut(s) 173
BglI GCCNNNNNGGC 2 cut(s) 134, 344
BlpI GCTNAGC 1 cut(s) 738
Bme1390I CCNGG 8 cut(s) 134, 344, 439, 454, 528, 744, 798, 1000
Bme18I GGWCC 5 cut(s) 210, 402, 457, 491, 1041
BmgBI CACGTC 1 cut(s) 447
BmgT120I GGNCC 8 cut(s) 136, 210, 402, 417, 457, 491, 812, 1041
BmiI GGNNCC 6 cut(s) 138, 171, 212, 398, 458, 813
BmrFI CCNGG 8 cut(s) 134, 344, 439, 454, 528, 744, 798, 1000
BmrI ACTGGG 1 cut(s) 732
BmsI GCATC 2 cut(s) 417, 760
BmuI ACTGGG 1 cut(s) 732
BoxI GACNNNNGTC 1 cut(s) 356
BpiI GAAGAC 2 cut(s) 441, 1121
BplI GAGNNNNNCTC 2 cut(s) 920, 952
BpmI CTGGAG 1 cut(s) 80
Bpu10I CCTNAGC 1 cut(s) 831
Bpu1102I GCTNAGC 1 cut(s) 738
BpuEI CTTGAG 1 cut(s) 266
BpuMI CCSGG 3 cut(s) 134, 344, 528
BsaBI GATNNNNATC 1 cut(s) 573
BsaHI GRCGYC 5 cut(s) 81, 170, 303, 312, 477
BsaI GGTCTC 3 cut(s) 215, 909, 940
BsaWI WCCGGW 2 cut(s) 387, 399
BsaXI ACNNNNNCTCC 6 cut(s) 302, 332, 584, 614, 636, 666
Bsc4I CCNNNNNNNGG 5 cut(s) 294, 331, 376, 438, 925
Bse1I ACTGG 4 cut(s) 97, 299, 361, 727
Bse21I CCTNAGG 1 cut(s) 1137
Bse8I GATNNNNATC 1 cut(s) 573
BseAI TCCGGA 1 cut(s) 387
BseBI CCWGG 5 cut(s) 439, 454, 744, 798, 1000
BseGI GGATG 3 cut(s) 550, 775, 978
BseJI GATNNNNATC 1 cut(s) 573
BseLI CCNNNNNNNGG 5 cut(s) 294, 331, 376, 438, 925
BseMII CTCAG 2 cut(s) 752, 1128
BseNI ACTGG 4 cut(s) 97, 299, 361, 727
BseRI GAGGAG 6 cut(s) 132, 165, 172, 563, 575, 605
BseX3I CGGCCG 1 cut(s) 333
BseXI GCAGC 3 cut(s) 163, 1075, 1078
Bsh1236I CGCG 2 cut(s) 249, 273
Bsh1285I CGRYCG 1 cut(s) 336
BshNI GGYRCC 2 cut(s) 169, 396
BsiEI CGRYCG 1 cut(s) 336
BsiHKAI GWGCWC 1 cut(s) 44
BsiSI CCGG 8 cut(s) 134, 161, 332, 344, 388, 400, 494, 528
BslFI GGGAC 3 cut(s) 104, 196, 510
BslI CCNNNNNNNGG 5 cut(s) 294, 331, 376, 438, 925
BsmAI GTCTC 6 cut(s) 197, 215, 322, 909, 940, 1004
BsmBI CGTCTC 2 cut(s) 197, 322
BsmFI GGGAC 3 cut(s) 104, 196, 510
BsmI GAATGC 2 cut(s) 805, 1131
Bso31I GGTCTC 3 cut(s) 215, 909, 940
Bsp1286I GDGCHC 1 cut(s) 44
Bsp13I TCCGGA 1 cut(s) 387
Bsp1407I TGTACA 1 cut(s) 633
Bsp143I GATC 4 cut(s) 103, 408, 568, 574
Bsp1720I GCTNAGC 1 cut(s) 738
Bsp19I CCATGG 2 cut(s) 45, 480
BspCNI CTCAG 2 cut(s) 751, 1129
BspEI TCCGGA 1 cut(s) 387
BspFNI CGCG 2 cut(s) 249, 273
BspLI GGNNCC 6 cut(s) 138, 171, 212, 398, 458, 813
BspPI GGATC 3 cut(s) 98, 403, 582
BspT107I GGYRCC 2 cut(s) 169, 396
BspTNI GGTCTC 3 cut(s) 215, 909, 940
BsrGI TGTACA 1 cut(s) 633
BsrI ACTGG 4 cut(s) 97, 299, 361, 727
BssMI GATC 4 cut(s) 103, 408, 568, 574
BssNI GRCGYC 5 cut(s) 81, 170, 303, 312, 477
BssT1I CCWWGG 2 cut(s) 45, 480
Bst2UI CCWGG 5 cut(s) 439, 454, 744, 798, 1000
Bst4CI ACNGT 3 cut(s) 226, 524, 539
Bst6I CTCTTC 4 cut(s) 70, 611, 881, 1031
BstACI GRCGYC 5 cut(s) 81, 170, 303, 312, 477
BstAUI TGTACA 1 cut(s) 633
BstC8I GCNNGC 2 cut(s) 114, 417
BstDEI CTNAG 5 cut(s) 738, 831, 1119, 1137, 1143
BstDSI CCRYGG 3 cut(s) 45, 271, 480
BstENI CCTNNNNNAGG 1 cut(s) 436
BstF5I GGATG 3 cut(s) 550, 775, 978
BstFNI CGCG 2 cut(s) 249, 273
BstH2I RGCGCY 1 cut(s) 173
BstHHI GCGC 1 cut(s) 172
BstKTI GATC 4 cut(s) 106, 411, 571, 577
BstMAI GTCTC 6 cut(s) 197, 215, 322, 909, 940, 1004
BstMBI GATC 4 cut(s) 103, 408, 568, 574
BstMCI CGRYCG 1 cut(s) 336
BstMWI GCNNNNNNNGC 5 cut(s) 134, 344, 353, 391, 811
BstNI CCWGG 5 cut(s) 439, 454, 744, 798, 1000
BstPAI GACNNNNGTC 1 cut(s) 356
BstSCI CCNGG 8 cut(s) 132, 342, 437, 452, 526, 742, 796, 998
BstUI CGCG 2 cut(s) 249, 273
BstV1I GCAGC 3 cut(s) 163, 1075, 1078
BstV2I GAAGAC 2 cut(s) 441, 1121
BstX2I RGATCY 1 cut(s) 408
BstYI RGATCY 1 cut(s) 408
BstZI CGGCCG 1 cut(s) 333
Bsu36I CCTNAGG 1 cut(s) 1137
BtgI CCRYGG 3 cut(s) 45, 271, 480
BtrI CACGTC 1 cut(s) 447
BtsCI GGATG 3 cut(s) 550, 775, 978
BtsI GCAGTG 1 cut(s) 685
BtsIMutI CAGTG 3 cut(s) 292, 368, 685
Cac8I GCNNGC 2 cut(s) 114, 417
CfoI GCGC 1 cut(s) 172
Cfr13I GGNCC 8 cut(s) 136, 210, 402, 417, 457, 491, 812, 1041
Cfr42I CCGCGG 1 cut(s) 274
CpoI CGGWCCG 1 cut(s) 402
CseI GACGC 3 cut(s) 89, 320, 485
Csp6I GTAC 4 cut(s) 259, 397, 601, 634
CspI CGGWCCG 1 cut(s) 402
CviAII CATG 3 cut(s) 10, 46, 481
CviQI GTAC 4 cut(s) 259, 397, 601, 634
DdeI CTNAG 5 cut(s) 738, 831, 1119, 1137, 1143
DinI GGCGCC 1 cut(s) 171
DpnI GATC 4 cut(s) 105, 410, 570, 576
DpnII GATC 4 cut(s) 103, 408, 568, 574
EaeI YGGCCR 3 cut(s) 333, 345, 996
EagI CGGCCG 1 cut(s) 333
Eam1104I CTCTTC 4 cut(s) 70, 611, 881, 1031
EarI CTCTTC 4 cut(s) 70, 611, 881, 1031
EciI GGCGGA 4 cut(s) 96, 135, 257, 941
EclXI CGGCCG 1 cut(s) 333
Eco130I CCWWGG 2 cut(s) 45, 480
Eco147I AGGCCT 1 cut(s) 1082
Eco31I GGTCTC 3 cut(s) 215, 909, 940
Eco47I GGWCC 5 cut(s) 210, 402, 457, 491, 1041
Eco52I CGGCCG 1 cut(s) 333
Eco57I CTGAAG 1 cut(s) 51
Eco81I CCTNAGG 1 cut(s) 1137
EcoNI CCTNNNNNAGG 1 cut(s) 436
EcoRI GAATTC 2 cut(s) 514, 787
EcoRII CCWGG 5 cut(s) 437, 452, 742, 796, 998
EcoT14I CCWWGG 2 cut(s) 45, 480
EgeI GGCGCC 1 cut(s) 171
EheI GGCGCC 1 cut(s) 171
ErhI CCWWGG 2 cut(s) 45, 480
Esp3I CGTCTC 2 cut(s) 197, 322
FaeI CATG 3 cut(s) 13, 49, 484
FaqI GGGAC 3 cut(s) 104, 196, 510
FatI CATG 3 cut(s) 9, 45, 480
FauI CCCGC 4 cut(s) 194, 329, 408, 683
FokI GGATG 3 cut(s) 557, 782, 985
GlaI GCGC 1 cut(s) 171
GsuI CTGGAG 1 cut(s) 80
HaeII RGCGCY 1 cut(s) 173
HapII CCGG 8 cut(s) 134, 161, 332, 344, 388, 400, 494, 528
HgaI GACGC 3 cut(s) 89, 320, 485
HhaI GCGC 1 cut(s) 172
Hin1I GRCGYC 5 cut(s) 81, 170, 303, 312, 477
Hin1II CATG 3 cut(s) 13, 49, 484
Hin6I GCGC 1 cut(s) 170
HinP1I GCGC 1 cut(s) 170
HinfI GANTC 3 cut(s) 239, 715, 1058
HpaII CCGG 8 cut(s) 134, 161, 332, 344, 388, 400, 494, 528
HphI GGTGA 2 cut(s) 551, 847
Hpy166II GTNNAC 2 cut(s) 444, 460
Hpy188I TCNGA 5 cut(s) 103, 520, 720, 762, 1102
Hpy188III TCNNGA 4 cut(s) 388, 466, 572, 578
Hpy8I GTNNAC 2 cut(s) 444, 460
Hpy99I CGWCG 5 cut(s) 83, 230, 308, 314, 1135
HpyCH4III ACNGT 3 cut(s) 226, 524, 539
HpyCH4IV ACGT 2 cut(s) 303, 446
HpyCH4V TGCA 2 cut(s) 849, 1088
HpyF10VI GCNNNNNNNGC 5 cut(s) 134, 344, 353, 391, 811
HpyF3I CTNAG 5 cut(s) 738, 831, 1119, 1137, 1143
HpySE526I ACGT 2 cut(s) 303, 446
Hsp92I GRCGYC 5 cut(s) 81, 170, 303, 312, 477
Hsp92II CATG 3 cut(s) 13, 49, 484
HspAI GCGC 1 cut(s) 170
KasI GGCGCC 1 cut(s) 169
Kpn2I TCCGGA 1 cut(s) 387
KpnI GGTACC 1 cut(s) 400
KspI CCGCGG 1 cut(s) 274
Kzo9I GATC 4 cut(s) 103, 408, 568, 574
LmnI GCTCC 4 cut(s) 47, 390, 675, 976
Lsp1109I GCAGC 3 cut(s) 163, 1075, 1078
LweI GCATC 2 cut(s) 417, 760
MaeII ACGT 2 cut(s) 303, 446
MalI GATC 4 cut(s) 105, 410, 570, 576
MboI GATC 4 cut(s) 103, 408, 568, 574
MflI RGATCY 1 cut(s) 408
MhlI GDGCHC 1 cut(s) 44
MlsI TGGCCA 1 cut(s) 998
MluCI AATT 4 cut(s) 514, 776, 787, 856
MluNI TGGCCA 1 cut(s) 998
Mly113I GGCGCC 1 cut(s) 170
MlyI GAGTC 2 cut(s) 233, 1067
MmeI TCCRAC 2 cut(s) 640, 743
Mox20I TGGCCA 1 cut(s) 998
MroI TCCGGA 1 cut(s) 387
MscI TGGCCA 1 cut(s) 998
MseI TTAA 1 cut(s) 945
Msp20I TGGCCA 1 cut(s) 998
MspA1I CMGCKG 4 cut(s) 273, 327, 415, 1069
MspI CCGG 8 cut(s) 134, 161, 332, 344, 388, 400, 494, 528
MspR9I CCNGG 8 cut(s) 134, 344, 439, 454, 528, 744, 798, 1000
Mva1269I GAATGC 2 cut(s) 805, 1131
MvaI CCWGG 5 cut(s) 439, 454, 744, 798, 1000
MvnI CGCG 2 cut(s) 249, 273
MwoI GCNNNNNNNGC 5 cut(s) 134, 344, 353, 391, 811
NarI GGCGCC 1 cut(s) 170
NciI CCSGG 3 cut(s) 134, 344, 528
NcoI CCATGG 2 cut(s) 45, 480
NdeII GATC 4 cut(s) 103, 408, 568, 574
NlaIII CATG 3 cut(s) 13, 49, 484
NlaIV GGNNCC 6 cut(s) 138, 171, 212, 398, 458, 813
NmeAIII GCCGAG 3 cut(s) 146, 840, 917
PasI CCCWGGG 1 cut(s) 797
PceI AGGCCT 1 cut(s) 1082
PcsI WCGNNNNNNNCGW 3 cut(s) 222, 234, 312
PctI GAATGC 2 cut(s) 805, 1131
PfeI GAWTC 1 cut(s) 715
PflFI GACNNNGTC 1 cut(s) 314
PflMI CCANNNNNTGG 2 cut(s) 294, 376
PleI GAGTC 2 cut(s) 233, 1066
PluTI GGCGCC 1 cut(s) 173
PpsI GAGTC 2 cut(s) 233, 1066
PshAI GACNNNNGTC 1 cut(s) 356
Psp6I CCWGG 5 cut(s) 437, 452, 742, 796, 998
PspGI CCWGG 5 cut(s) 437, 452, 742, 796, 998
PspN4I GGNNCC 6 cut(s) 138, 171, 212, 398, 458, 813
PspPI GGNCC 8 cut(s) 136, 210, 402, 417, 457, 491, 812, 1041
PsuI RGATCY 1 cut(s) 408
PsyI GACNNNGTC 1 cut(s) 314
RsaI GTAC 4 cut(s) 260, 398, 602, 635
RsaNI GTAC 4 cut(s) 259, 397, 601, 634
Rsr2I CGGWCCG 1 cut(s) 402
RsrII CGGWCCG 1 cut(s) 402
SacII CCGCGG 1 cut(s) 274
SaqAI TTAA 1 cut(s) 945
Sau3AI GATC 4 cut(s) 103, 408, 568, 574
Sau96I GGNCC 8 cut(s) 136, 210, 402, 417, 457, 491, 812, 1041
SchI GAGTC 2 cut(s) 233, 1067
ScrFI CCNGG 8 cut(s) 134, 344, 439, 454, 528, 744, 798, 1000
SduI GDGCHC 1 cut(s) 44
SfaNI GCATC 2 cut(s) 417, 760
SfoI GGCGCC 1 cut(s) 171
Sfr303I CCGCGG 1 cut(s) 274
SgrBI CCGCGG 1 cut(s) 274
SinI GGWCC 5 cut(s) 210, 402, 457, 491, 1041
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
Sse9I AATT 4 cut(s) 514, 776, 787, 856
SseBI AGGCCT 1 cut(s) 1082
SspDI GGCGCC 1 cut(s) 169
StuI AGGCCT 1 cut(s) 1082
StyD4I CCNGG 8 cut(s) 132, 342, 437, 452, 526, 742, 796, 998
StyI CCWWGG 2 cut(s) 45, 480
TaaI ACNGT 3 cut(s) 226, 524, 539
TaiI ACGT 2 cut(s) 306, 449
TaqI TCGA 3 cut(s) 237, 425, 608
TaqII GACCGA 2 cut(s) 419, 1058
TasI AATT 4 cut(s) 514, 776, 787, 856
TatI WGTACW 1 cut(s) 633
TauI GCSGC 8 cut(s) 112, 151, 273, 276, 327, 338, 369, 500
TfiI GAWTC 1 cut(s) 715
Tru1I TTAA 1 cut(s) 945
Tru9I TTAA 1 cut(s) 945
TscAI CASTG 3 cut(s) 299, 368, 685
TseI GCWGC 3 cut(s) 151, 1063, 1066
TspDTI ATGAA 3 cut(s) 629, 998, 1049
TspRI CASTG 3 cut(s) 299, 368, 685
Tth111I GACNNNGTC 1 cut(s) 314
Van91I CCANNNNNTGG 2 cut(s) 294, 376
VpaK11BI GGWCC 5 cut(s) 210, 402, 457, 491, 1041
XagI CCTNNNNNAGG 1 cut(s) 436
XapI RAATTY 3 cut(s) 514, 776, 787
ZraI GACGTC 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.