MD07G1097300.v1.1
MYB Family

Alcohol dehydrogenase transcription factor Myb/SANT-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0010006
Physical Location & Seq
Reverse (-)
10680866 .. 10681952
1087 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1097300.v1.1.491

Sequence Viewer

Length: 1020 bp
ATGGCTTCTCCACCGTCTTCCCCGCAGGACGACTCCATCCTCCCTCTCCAATCGGACCCACCGCAGGCCGTGCCGCTTGCTCTCCCGGCCCCACCGCTGACCCAATCCCAGCAAACACAGCCGAACCCAACCCCGCCTTCCTCCCGCCGCCTCCCTCCTCCCTGCTGGTCCCACGACGAGACCGTCGCCCTCATCGACTCCTACCGCGAAAAGTGGTACTCCCTCCGCCGTGGAAACCTCAAGGCCACCCACTGGCAGGACGTGGCCGACGCCGTCGCTCGGCGATGCCCGGCTGCTTCTCCCGCGAAGACCGCCGTTCAGTGCCGTCACAAGATGGAGAAGCTCCGGAAGCGGTACCGGACTGAGATCCAGCGAGCCAGGTCGATGCCGTTGTCCAGATTCACGTCGTCGTGGGTCCACTTCAAGCGGATGGACGCCATGGAGAAGGGGCCGGCAGCTGGGAAGAGGGAAAACTCCGAAAGTCCCGGCGAAGAGGAGGAGAACGAGGAGAACGAAGAGGAGGAGGATCCGGATCAGGAGCTCTATGAGGAGCTGAGTGGCGGAAGTGGTGGCGGTGCTGGTGCCGGAAGTGGGTTTAGGATTAGGATTCCAACTGGGGTTAGTATAGCTCAGCCTGGGACCAAGGTGTATCCGAAGATGGATCAGAAATTCGGGATGAATTCGAATCCAGCGTCGGTTTATGGGAGTGCTAAGGTGATGAGAGAGTGTGGGAATTCGGGGAGGCCCGGATTGGGGAAGAGAGAAGGGAATGGGAGGGAGAGGGAGAGAGACCCCGTGGCGGAGATGGTGTCGGCGATTAAGCTTTTGGGAGATGGGTTTGTGAGGATGGAGCAGATGAAGATGGAGATGGCGAGGGAGGTCGAGGCGATGCGGATGGAGATGGAAATGAAGCGGACGGAAATGATTTTGGACTCTCAGCAAAGAATTGTGGAGGCTTTTGCGAAGGCGGTTTCGGAGAAGAAGAAGAAGGCCAAGAGAATGCCATCCCCTGAGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

340

Amino Acids

37.76

Weight (kDa)

8.75

Isoelectric Point (pI)

70.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 54 - 147 7e-18 Myb/SANT-like DNA-binding domain
MADF_DNA_bdg PF10545 76 - 146 3.6e-09 Alcohol dehydrogenase transcription factor Myb/SANT-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 182
Acc65I GGTACC 1 cut(s) 354
AccB1I GGYRCC 2 cut(s) 354, 581
AccB7I CCANNNNNTGG 1 cut(s) 252
AccII CGCG 2 cut(s) 207, 305
AccIII TCCGGA 2 cut(s) 345, 529
AclWI GGATC 5 cut(s) 361, 521, 534, 540, 669
AcoI YGGCCR 1 cut(s) 264
AcsI RAATTY 3 cut(s) 668, 679, 733
AcyI GRCGYC 2 cut(s) 270, 435
AfaI GTAC 2 cut(s) 218, 356
AfiI CCNNNNNNNGG 9 cut(s) 64, 252, 256, 279, 458, 591, 752, 753, 799
AgsI TTSAA 1 cut(s) 424
AjiI CACGTC 2 cut(s) 262, 405
AjnI CCWGG 2 cut(s) 377, 634
AjuI GAANNNNNNNTTGG 2 cut(s) 121, 153
AluBI AGCT 6 cut(s) 343, 458, 541, 553, 629, 823
AluI AGCT 6 cut(s) 343, 458, 541, 553, 629, 823
Alw21I GWGCWC 1 cut(s) 543
Alw26I GTCTC 2 cut(s) 173, 783
AlwI GGATC 5 cut(s) 361, 521, 534, 540, 669
Aor13HI TCCGGA 2 cut(s) 345, 529
AoxI GGCC 7 cut(s) 66, 87, 243, 264, 449, 743, 990
ApeKI GCWGC 2 cut(s) 293, 455
ApoI RAATTY 3 cut(s) 668, 679, 733
ArsI GACNNNNNNTTYG 2 cut(s) 677, 709
Asp718I GGTACC 1 cut(s) 354
AspS9I GGNCC 7 cut(s) 55, 88, 168, 415, 449, 639, 744
AsuC2I CCSGG 4 cut(s) 86, 290, 486, 747
AsuHPI GGTGA 1 cut(s) 727
AsuII TTCGAA 1 cut(s) 683
AvaII GGWCC 4 cut(s) 55, 168, 415, 639
AxyI CCTNAGG 1 cut(s) 1011
BamHI GGATCC 1 cut(s) 526
BanI GGYRCC 2 cut(s) 354, 581
BanII GRGCYC 1 cut(s) 543
BbsI GAAGAC 2 cut(s) 9, 314
Bbv12I GWGCWC 1 cut(s) 543
BbvI GCAGC 2 cut(s) 280, 467
BceAI ACGGC 6 cut(s) 53, 213, 257, 299, 309, 373
BciT130I CCWGG 2 cut(s) 379, 636
BciVI GTATCC 1 cut(s) 660
BcnI CCSGG 4 cut(s) 86, 290, 486, 747
BcoDI GTCTC 2 cut(s) 173, 783
BfuI GTATCC 1 cut(s) 660
BisI GCNGC 4 cut(s) 74, 148, 294, 456
BlpI GCTNAGC 1 cut(s) 630
BlsI GCNGC 4 cut(s) 75, 149, 295, 457
Bme1390I CCNGG 6 cut(s) 86, 290, 379, 486, 636, 747
Bme18I GGWCC 4 cut(s) 55, 168, 415, 639
BmgBI CACGTC 2 cut(s) 262, 405
BmgT120I GGNCC 7 cut(s) 55, 88, 168, 415, 449, 639, 744
BmiI GGNNCC 9 cut(s) 57, 90, 170, 356, 416, 450, 528, 583, 640
BmrFI CCNGG 6 cut(s) 86, 290, 379, 486, 636, 747
BmrI ACTGGG 1 cut(s) 624
BmsI GCATC 3 cut(s) 275, 375, 879
BmuI ACTGGG 1 cut(s) 624
BpiI GAAGAC 2 cut(s) 9, 314
Bpu10I CCTNAGC 1 cut(s) 711
Bpu1102I GCTNAGC 1 cut(s) 630
Bpu14I TTCGAA 1 cut(s) 683
BpuEI CTTGAG 1 cut(s) 224
BpuMI CCSGG 4 cut(s) 86, 290, 486, 747
BsaBI GATNNNNATC 1 cut(s) 531
BsaHI GRCGYC 2 cut(s) 270, 435
BsaI GGTCTC 2 cut(s) 173, 783
BsaJI CCNNGG 5 cut(s) 229, 438, 635, 642, 795
BsaWI WCCGGW 3 cut(s) 345, 357, 529
BsaXI ACNNNNNCTCC 2 cut(s) 794, 824
Bsc4I CCNNNNNNNGG 9 cut(s) 64, 252, 256, 279, 458, 591, 752, 753, 799
Bse118I RCCGGY 1 cut(s) 451
Bse1I ACTGG 2 cut(s) 257, 619
Bse21I CCTNAGG 1 cut(s) 1011
Bse8I GATNNNNATC 1 cut(s) 531
BseAI TCCGGA 2 cut(s) 345, 529
BseBI CCWGG 2 cut(s) 379, 636
BseDI CCNNGG 5 cut(s) 229, 438, 635, 642, 795
BseGI GGATG 6 cut(s) 36, 435, 681, 852, 900, 1004
BseJI GATNNNNATC 1 cut(s) 531
BseLI CCNNNNNNNGG 9 cut(s) 64, 252, 256, 279, 458, 591, 752, 753, 799
BseMII CTCAG 5 cut(s) 354, 545, 644, 950, 1002
BseNI ACTGG 2 cut(s) 257, 619
BseRI GAGGAG 7 cut(s) 147, 509, 512, 521, 533, 536, 563
BseXI GCAGC 2 cut(s) 280, 467
BseYI CCCAGC 2 cut(s) 108, 458
Bsh1236I CGCG 2 cut(s) 207, 305
BshFI GGCC 7 cut(s) 68, 89, 245, 266, 451, 745, 992
BshNI GGYRCC 2 cut(s) 354, 581
BsiHKAI GWGCWC 1 cut(s) 543
BsiSI CCGG 9 cut(s) 86, 290, 346, 358, 452, 486, 530, 585, 747
BslFI GGGAC 3 cut(s) 154, 468, 652
BslI CCNNNNNNNGG 9 cut(s) 64, 252, 256, 279, 458, 591, 752, 753, 799
BsmAI GTCTC 2 cut(s) 173, 783
BsmFI GGGAC 3 cut(s) 154, 468, 652
BsmI GAATGC 1 cut(s) 1005
BsnI GGCC 7 cut(s) 68, 89, 245, 266, 451, 745, 992
Bso31I GGTCTC 2 cut(s) 173, 783
Bsp119I TTCGAA 1 cut(s) 683
Bsp1286I GDGCHC 1 cut(s) 543
Bsp13I TCCGGA 2 cut(s) 345, 529
Bsp143I GATC 4 cut(s) 366, 526, 532, 661
Bsp1720I GCTNAGC 1 cut(s) 630
Bsp19I CCATGG 1 cut(s) 438
BspANI GGCC 7 cut(s) 68, 89, 245, 266, 451, 745, 992
BspCNI CTCAG 5 cut(s) 355, 546, 643, 949, 1003
BspEI TCCGGA 2 cut(s) 345, 529
BspFNI CGCG 2 cut(s) 207, 305
BspLI GGNNCC 9 cut(s) 57, 90, 170, 356, 416, 450, 528, 583, 640
BspPI GGATC 5 cut(s) 361, 521, 534, 540, 669
BspT104I TTCGAA 1 cut(s) 683
BspT107I GGYRCC 2 cut(s) 354, 581
BspTNI GGTCTC 2 cut(s) 173, 783
BsrFI RCCGGY 1 cut(s) 451
BsrI ACTGG 2 cut(s) 257, 619
BssAI RCCGGY 1 cut(s) 451
BssECI CCNNGG 5 cut(s) 229, 438, 635, 642, 795
BssMI GATC 4 cut(s) 366, 526, 532, 661
BssNI GRCGYC 2 cut(s) 270, 435
BssT1I CCWWGG 2 cut(s) 438, 642
Bst2UI CCWGG 2 cut(s) 379, 636
Bst4CI ACNGT 2 cut(s) 15, 184
Bst6I CTCTTC 4 cut(s) 458, 486, 510, 752
BstACI GRCGYC 2 cut(s) 270, 435
BstAPI GCANNNNNTGC 1 cut(s) 70
BstBI TTCGAA 1 cut(s) 683
BstC8I GCNNGC 4 cut(s) 66, 78, 375, 453
BstDEI CTNAG 6 cut(s) 363, 554, 630, 711, 936, 1011
BstDSI CCRYGG 3 cut(s) 229, 438, 795
BstF5I GGATG 6 cut(s) 36, 435, 681, 852, 900, 1004
BstFNI CGCG 2 cut(s) 207, 305
BstKTI GATC 4 cut(s) 369, 529, 535, 664
BstMAI GTCTC 2 cut(s) 173, 783
BstMBI GATC 4 cut(s) 366, 526, 532, 661
BstMWI GCNNNNNNNGC 6 cut(s) 70, 86, 118, 302, 311, 349
BstNI CCWGG 2 cut(s) 379, 636
BstSCI CCNGG 6 cut(s) 84, 288, 377, 484, 634, 745
BstUI CGCG 2 cut(s) 207, 305
BstV1I GCAGC 2 cut(s) 280, 467
BstV2I GAAGAC 2 cut(s) 9, 314
BstX2I RGATCY 2 cut(s) 366, 526
BstYI RGATCY 2 cut(s) 366, 526
Bsu36I CCTNAGG 1 cut(s) 1011
BsuI GTATCC 1 cut(s) 660
BsuRI GGCC 7 cut(s) 68, 89, 245, 266, 451, 745, 992
BtgI CCRYGG 3 cut(s) 229, 438, 795
BtgZI GCGATG 2 cut(s) 298, 902
BtrI CACGTC 2 cut(s) 262, 405
BtsCI GGATG 6 cut(s) 36, 435, 681, 852, 900, 1004
BtsIMutI CAGTG 2 cut(s) 250, 326
Cac8I GCNNGC 4 cut(s) 66, 78, 375, 453
Cfr10I RCCGGY 1 cut(s) 451
Cfr13I GGNCC 7 cut(s) 55, 88, 168, 415, 449, 639, 744
CseI GACGC 3 cut(s) 278, 443, 681
Csp6I GTAC 2 cut(s) 217, 355
CviAII CATG 1 cut(s) 439
CviQI GTAC 2 cut(s) 217, 355
DdeI CTNAG 6 cut(s) 363, 554, 630, 711, 936, 1011
DpnI GATC 4 cut(s) 368, 528, 534, 663
DpnII GATC 4 cut(s) 366, 526, 532, 661
DrdI GACNNNNNNGTC 1 cut(s) 182
DseDI GACNNNNNNGTC 1 cut(s) 182
EaeI YGGCCR 1 cut(s) 264
Eam1104I CTCTTC 4 cut(s) 458, 486, 510, 752
EarI CTCTTC 4 cut(s) 458, 486, 510, 752
EciI GGCGGA 3 cut(s) 215, 576, 815
Ecl136II GAGCTC 1 cut(s) 541
Eco130I CCWWGG 2 cut(s) 438, 642
Eco24I GRGCYC 1 cut(s) 543
Eco31I GGTCTC 2 cut(s) 173, 783
Eco47I GGWCC 4 cut(s) 55, 168, 415, 639
Eco53kI GAGCTC 1 cut(s) 541
Eco81I CCTNAGG 1 cut(s) 1011
EcoICRI GAGCTC 1 cut(s) 541
EcoRI GAATTC 2 cut(s) 679, 733
EcoRII CCWGG 2 cut(s) 377, 634
EcoT14I CCWWGG 2 cut(s) 438, 642
EcoT38I GRGCYC 1 cut(s) 543
ErhI CCWWGG 2 cut(s) 438, 642
FaeI CATG 1 cut(s) 442
FaiI YATR 5 cut(s) 440, 546, 626, 702, 1018
FaqI GGGAC 3 cut(s) 154, 468, 652
FatI CATG 1 cut(s) 438
FauI CCCGC 4 cut(s) 30, 141, 152, 310
Fnu4HI GCNGC 4 cut(s) 74, 148, 294, 456
FokI GGATG 6 cut(s) 23, 442, 688, 859, 907, 991
FriOI GRGCYC 1 cut(s) 543
Fsp4HI GCNGC 4 cut(s) 74, 148, 294, 456
GluI GCNGC 4 cut(s) 74, 148, 294, 456
GsaI CCCAGC 2 cut(s) 112, 462
HaeIII GGCC 7 cut(s) 68, 89, 245, 266, 451, 745, 992
HapII CCGG 9 cut(s) 86, 290, 346, 358, 452, 486, 530, 585, 747
HgaI GACGC 3 cut(s) 278, 443, 681
Hin1I GRCGYC 2 cut(s) 270, 435
Hin1II CATG 1 cut(s) 442
HindIII AAGCTT 1 cut(s) 821
HinfI GANTC 6 cut(s) 32, 197, 399, 607, 685, 932
HpaII CCGG 9 cut(s) 86, 290, 346, 358, 452, 486, 530, 585, 747
HphI GGTGA 1 cut(s) 727
Hpy166II GTNNAC 1 cut(s) 418
Hpy188I TCNGA 5 cut(s) 55, 478, 654, 666, 976
Hpy188III TCNNGA 5 cut(s) 346, 396, 530, 536, 673
Hpy8I GTNNAC 1 cut(s) 418
Hpy99I CGWCG 7 cut(s) 179, 188, 272, 278, 409, 412, 697
HpyAV CCTTC 5 cut(s) 147, 439, 758, 958, 982
HpyCH4III ACNGT 2 cut(s) 15, 184
HpyCH4IV ACGT 2 cut(s) 261, 404
HpyF10VI GCNNNNNNNGC 6 cut(s) 70, 86, 118, 302, 311, 349
HpyF3I CTNAG 6 cut(s) 363, 554, 630, 711, 936, 1011
HpySE526I ACGT 2 cut(s) 261, 404
Hsp92I GRCGYC 2 cut(s) 270, 435
Hsp92II CATG 1 cut(s) 442
Kpn2I TCCGGA 2 cut(s) 345, 529
KpnI GGTACC 1 cut(s) 358
KroI GCCGGC 1 cut(s) 451
KroNI GCCGGC 1 cut(s) 453
Kzo9I GATC 4 cut(s) 366, 526, 532, 661
LmnI GCTCC 4 cut(s) 348, 538, 550, 850
Lsp1109I GCAGC 2 cut(s) 280, 467
LweI GCATC 3 cut(s) 275, 375, 879
MaeII ACGT 2 cut(s) 261, 404
MaeIII GTNAC 1 cut(s) 326
MalI GATC 4 cut(s) 368, 528, 534, 663
MboI GATC 4 cut(s) 366, 526, 532, 661
MflI RGATCY 2 cut(s) 366, 526
MhlI GDGCHC 1 cut(s) 543
MluCI AATT 4 cut(s) 668, 679, 733, 945
MlyI GAGTC 3 cut(s) 26, 191, 926
MmeI TCCRAC 1 cut(s) 635
MroI TCCGGA 2 cut(s) 345, 529
MroNI GCCGGC 1 cut(s) 451
MseI TTAA 1 cut(s) 819
MspA1I CMGCKG 2 cut(s) 97, 458
MspI CCGG 9 cut(s) 86, 290, 346, 358, 452, 486, 530, 585, 747
MspR9I CCNGG 6 cut(s) 86, 290, 379, 486, 636, 747
Mva1269I GAATGC 1 cut(s) 1005
MvaI CCWGG 2 cut(s) 379, 636
MvnI CGCG 2 cut(s) 207, 305
MwoI GCNNNNNNNGC 6 cut(s) 70, 86, 118, 302, 311, 349
NaeI GCCGGC 1 cut(s) 453
NciI CCSGG 4 cut(s) 86, 290, 486, 747
NcoI CCATGG 1 cut(s) 438
NdeII GATC 4 cut(s) 366, 526, 532, 661
NgoMIV GCCGGC 1 cut(s) 451
NlaIII CATG 1 cut(s) 442
NlaIV GGNNCC 9 cut(s) 57, 90, 170, 356, 416, 450, 528, 583, 640
NmeAIII GCCGAG 1 cut(s) 259
NmuCI GTSAC 1 cut(s) 326
NspV TTCGAA 1 cut(s) 683
PcsI WCGNNNNNNNCGW 4 cut(s) 180, 192, 510, 689
PctI GAATGC 1 cut(s) 1005
PdiI GCCGGC 1 cut(s) 453
PfeI GAWTC 3 cut(s) 399, 607, 685
PflFI GACNNNGTC 1 cut(s) 272
PflMI CCANNNNNTGG 1 cut(s) 252
PkrI GCNGC 4 cut(s) 75, 149, 295, 457
PleI GAGTC 3 cut(s) 26, 191, 926
PpsI GAGTC 3 cut(s) 26, 191, 926
Psp124BI GAGCTC 1 cut(s) 543
Psp6I CCWGG 2 cut(s) 377, 634
PspFI CCCAGC 2 cut(s) 108, 458
PspGI CCWGG 2 cut(s) 377, 634
PspN4I GGNNCC 9 cut(s) 57, 90, 170, 356, 416, 450, 528, 583, 640
PspPI GGNCC 7 cut(s) 55, 88, 168, 415, 449, 639, 744
PsuI RGATCY 2 cut(s) 366, 526
PsyI GACNNNGTC 1 cut(s) 272
PvuII CAGCTG 1 cut(s) 458
RsaI GTAC 2 cut(s) 218, 356
RsaNI GTAC 2 cut(s) 217, 355
SacI GAGCTC 1 cut(s) 543
SaqAI TTAA 1 cut(s) 819
SatI GCNGC 4 cut(s) 74, 148, 294, 456
Sau3AI GATC 4 cut(s) 366, 526, 532, 661
Sau96I GGNCC 7 cut(s) 55, 88, 168, 415, 449, 639, 744
SchI GAGTC 3 cut(s) 26, 191, 926
ScrFI CCNGG 6 cut(s) 86, 290, 379, 486, 636, 747
SduI GDGCHC 1 cut(s) 543
SfaNI GCATC 3 cut(s) 275, 375, 879
SfuI TTCGAA 1 cut(s) 683
SinI GGWCC 4 cut(s) 55, 168, 415, 639
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 4 cut(s) 668, 679, 733, 945
SstI GAGCTC 1 cut(s) 543
StyD4I CCNGG 6 cut(s) 84, 288, 377, 484, 634, 745
StyI CCWWGG 2 cut(s) 438, 642
TaaI ACNGT 2 cut(s) 15, 184
TaiI ACGT 2 cut(s) 264, 407
TaqI TCGA 4 cut(s) 195, 383, 683, 882
TasI AATT 4 cut(s) 668, 679, 733, 945
TauI GCSGC 2 cut(s) 76, 150
TfiI GAWTC 3 cut(s) 399, 607, 685
Tru1I TTAA 1 cut(s) 819
Tru9I TTAA 1 cut(s) 819
TscAI CASTG 2 cut(s) 257, 326
TseFI GTSAC 1 cut(s) 326
TseI GCWGC 2 cut(s) 293, 455
Tsp45I GTSAC 1 cut(s) 326
TspDTI ATGAA 3 cut(s) 692, 872, 923
TspGWI ACGGA 1 cut(s) 932
TspRI CASTG 2 cut(s) 257, 326
Tth111I GACNNNGTC 1 cut(s) 272
Van91I CCANNNNNTGG 1 cut(s) 252
VpaK11BI GGWCC 4 cut(s) 55, 168, 415, 639
XapI RAATTY 3 cut(s) 668, 679, 733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.