pycom07g08010
MYB Family

Alcohol dehydrogenase transcription factor Myb/SANT-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Reverse (-)
7411992 .. 7413223
1232 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g08010.1

Sequence Viewer

Length: 1185 bp
ATGGCTTCTCCACCGTCTTCCCCGCAGGACGACTCCATCCTCCCTCTCCAATCGGACCCACCGCAGGCCGTGCCGCTTGCTCTCCCGGCCCCACCGCTGACCCTATCCCAGCAAACACAGCCGAACCCAACCCCGCCTTCCTCCCGCCGCCTCCCTCCTCCCTGCTGGTCCCACGACGAGACCGTTGCCCTCATTGACTCCTACCGCGAAAAGTGGTACTCCCTCCGCCGTGGAAACCTCAAGGCCACCCACTGGCAGGACGTGGCCGACGCCGTCGCTCGACGATGCCCGGCTGCTTCTCCCGCGAAGACCGCCGTTCAGTGCCGTCACAAGATGGAAAAGCTCCGGAAGCGGTACCGGACTGAGATCGATCGAGCCAGGTCGATGCCGTTGTCCAGATTCACGTCGTCGTGGGTCCACTTCAAGCGGATGGACGCCATGGAGAAGGGGCCGGCAGCTGGGAAGAGGGAAAATTCCGAAAGTCCCGGCGAAGAGGAAGAGAACGAGGAGAACGAAGAGGAGGAGGATCCGGATCAGGAGCTCTATGAGGAGCTGAGATACGGGTCGAATATGAAGAGTATGAGTAAGTTGTATAGGAATGGAGTTGGGGTTGGTGGCGGAAGCGGTGGCGGTGCTGGTGCCGGAAGTGGGTTCAGGATTAGGATTCCAACTGGGGTTAGTATAGCTCAGCCTGGGACCAAGGTGTATCCGAAGATGGATCAGAAATTCGGGATGAATTCGCATCCAGGGTCGAATTCGGGGTCGGTTTATGGGAGTGCTAAGGTGATGAGAGAGGGTGGGAATTCGGGGAGGCCCGGATTGGGGAAGAGAGAAAGGGATGGGGGGGAGAGAGACCCCGTGGATGGAGCAGATGAAGATGGAGATGGCAAGGGAGATCGAGGCAATGCGGATGGAGATGGAGATGAAGCGGACGGAAATGATTTTGGACTCTCAGCAAAGAATTGTGGAGGCTTTTGCGAAGGCAGTTTCGGAGAAGAAGAAGAAGGCCAAGAGAATGCCATCCCCCGAGGCATAGATGGTGGGATTGCATTGGAAGATAGCAGCCGGTGGTGCTTTTGGATCATAGAGGGACTAAGTAATGTGAGTTTAATTAGTTGTAATTTCGTGTTTAACTCTCGTTTACGAGCCACTTTTTACAATTTCCTTTTGTTTTCAAAGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

395

Amino Acids

42.85

Weight (kDa)

5.27

Isoelectric Point (pI)

59.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 54 - 147 9.9e-18 Myb/SANT-like DNA-binding domain
MADF_DNA_bdg PF10545 76 - 146 6e-09 Alcohol dehydrogenase transcription factor Myb/SANT-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 354
AccB1I GGYRCC 2 cut(s) 354, 638
AccB7I CCANNNNNTGG 1 cut(s) 252
AccII CGCG 2 cut(s) 207, 305
AccIII TCCGGA 2 cut(s) 345, 529
AclWI GGATC 5 cut(s) 521, 534, 540, 726, 1088
AcoI YGGCCR 1 cut(s) 264
AcsI RAATTY 5 cut(s) 472, 725, 736, 754, 802
AcyI GRCGYC 2 cut(s) 270, 435
AfaI GTAC 2 cut(s) 218, 356
AfiI CCNNNNNNNGG 8 cut(s) 64, 252, 256, 458, 648, 821, 822, 863
AgsI TTSAA 2 cut(s) 424, 1176
AjiI CACGTC 2 cut(s) 262, 405
AjnI CCWGG 3 cut(s) 377, 691, 745
AjuI GAANNNNNNNTTGG 2 cut(s) 121, 153
AluBI AGCT 5 cut(s) 343, 458, 541, 553, 686
AluI AGCT 5 cut(s) 343, 458, 541, 553, 686
Alw21I GWGCWC 1 cut(s) 543
Alw26I GTCTC 2 cut(s) 173, 846
AlwI GGATC 5 cut(s) 521, 534, 540, 726, 1088
Ama87I CYCGRG 1 cut(s) 1026
Aor13HI TCCGGA 2 cut(s) 345, 529
AoxI GGCC 7 cut(s) 66, 87, 243, 264, 449, 812, 1006
ApeKI GCWGC 3 cut(s) 293, 455, 1062
ApoI RAATTY 5 cut(s) 472, 725, 736, 754, 802
ArsI GACNNNNNNTTYG 2 cut(s) 746, 778
Asp718I GGTACC 1 cut(s) 354
AspS9I GGNCC 7 cut(s) 55, 88, 168, 415, 449, 696, 813
AsuC2I CCSGG 4 cut(s) 86, 290, 486, 816
AsuHPI GGTGA 1 cut(s) 796
AvaI CYCGRG 1 cut(s) 1026
AvaII GGWCC 4 cut(s) 55, 168, 415, 696
BamHI GGATCC 1 cut(s) 526
BanI GGYRCC 2 cut(s) 354, 638
BanII GRGCYC 1 cut(s) 543
BbsI GAAGAC 2 cut(s) 9, 314
Bbv12I GWGCWC 1 cut(s) 543
BbvI GCAGC 3 cut(s) 280, 467, 1074
BceAI ACGGC 6 cut(s) 53, 213, 257, 299, 309, 373
BcgI CGANNNNNNTGC 2 cut(s) 167, 201
BciT130I CCWGG 3 cut(s) 379, 693, 747
BciVI GTATCC 1 cut(s) 717
BcnI CCSGG 4 cut(s) 86, 290, 486, 816
BcoDI GTCTC 2 cut(s) 173, 846
BfuI GTATCC 1 cut(s) 717
BisI GCNGC 5 cut(s) 74, 148, 294, 456, 1063
BlpI GCTNAGC 1 cut(s) 687
BlsI GCNGC 5 cut(s) 75, 149, 295, 457, 1064
Bme1390I CCNGG 7 cut(s) 86, 290, 379, 486, 693, 747, 816
Bme18I GGWCC 4 cut(s) 55, 168, 415, 696
BmeT110I CYCGRG 1 cut(s) 1026
BmgBI CACGTC 2 cut(s) 262, 405
BmgT120I GGNCC 7 cut(s) 55, 88, 168, 415, 449, 696, 813
BmiI GGNNCC 9 cut(s) 57, 90, 170, 356, 416, 450, 528, 640, 697
BmrFI CCNGG 7 cut(s) 86, 290, 379, 486, 693, 747, 816
BmrI ACTGGG 1 cut(s) 681
BmsI GCATC 3 cut(s) 275, 375, 751
BmuI ACTGGG 1 cut(s) 681
BpiI GAAGAC 2 cut(s) 9, 314
Bpu10I CCTNAGC 1 cut(s) 780
Bpu1102I GCTNAGC 1 cut(s) 687
BpuEI CTTGAG 1 cut(s) 224
BpuMI CCSGG 4 cut(s) 86, 290, 486, 816
Bsa29I ATCGAT 1 cut(s) 369
BsaBI GATNNNNATC 1 cut(s) 531
BsaHI GRCGYC 2 cut(s) 270, 435
BsaI GGTCTC 2 cut(s) 173, 846
BsaJI CCNNGG 7 cut(s) 229, 438, 692, 699, 746, 858, 1027
BsaWI WCCGGW 3 cut(s) 345, 357, 529
BsaXI ACNNNNNCTCC 2 cut(s) 594, 624
Bsc4I CCNNNNNNNGG 8 cut(s) 64, 252, 256, 458, 648, 821, 822, 863
Bse118I RCCGGY 2 cut(s) 451, 1065
Bse1I ACTGG 2 cut(s) 257, 676
Bse3DI GCAATG 1 cut(s) 910
Bse8I GATNNNNATC 1 cut(s) 531
BseAI TCCGGA 2 cut(s) 345, 529
BseBI CCWGG 3 cut(s) 379, 693, 747
BseCI ATCGAT 1 cut(s) 369
BseDI CCNNGG 7 cut(s) 229, 438, 692, 699, 746, 858, 1027
BseGI GGATG 8 cut(s) 36, 435, 738, 742, 844, 868, 916, 1020
BseJI GATNNNNATC 1 cut(s) 531
BseLI CCNNNNNNNGG 8 cut(s) 64, 252, 256, 458, 648, 821, 822, 863
BseMI GCAATG 1 cut(s) 910
BseMII CTCAG 4 cut(s) 354, 545, 701, 966
BseNI ACTGG 2 cut(s) 257, 676
BseRI GAGGAG 5 cut(s) 147, 521, 533, 536, 563
BseXI GCAGC 3 cut(s) 280, 467, 1074
BseYI CCCAGC 2 cut(s) 108, 458
Bsh1236I CGCG 2 cut(s) 207, 305
Bsh1285I CGRYCG 1 cut(s) 373
BshFI GGCC 7 cut(s) 68, 89, 245, 266, 451, 814, 1008
BshNI GGYRCC 2 cut(s) 354, 638
BshVI ATCGAT 1 cut(s) 369
BsiEI CGRYCG 1 cut(s) 373
BsiHKAI GWGCWC 1 cut(s) 543
BsiHKCI CYCGRG 1 cut(s) 1026
BslFI GGGAC 4 cut(s) 154, 468, 709, 1104
BslI CCNNNNNNNGG 8 cut(s) 64, 252, 256, 458, 648, 821, 822, 863
BsmAI GTCTC 2 cut(s) 173, 846
BsmFI GGGAC 4 cut(s) 154, 468, 709, 1104
BsmI GAATGC 1 cut(s) 1021
BsnI GGCC 7 cut(s) 68, 89, 245, 266, 451, 814, 1008
Bso31I GGTCTC 2 cut(s) 173, 846
BsoBI CYCGRG 1 cut(s) 1026
Bsp1286I GDGCHC 1 cut(s) 543
Bsp13I TCCGGA 2 cut(s) 345, 529
Bsp143I GATC 7 cut(s) 366, 370, 526, 532, 718, 895, 1080
Bsp1720I GCTNAGC 1 cut(s) 687
Bsp19I CCATGG 1 cut(s) 438
BspANI GGCC 7 cut(s) 68, 89, 245, 266, 451, 814, 1008
BspCNI CTCAG 4 cut(s) 355, 546, 700, 965
BspDI ATCGAT 1 cut(s) 369
BspEI TCCGGA 2 cut(s) 345, 529
BspFNI CGCG 2 cut(s) 207, 305
BspLI GGNNCC 9 cut(s) 57, 90, 170, 356, 416, 450, 528, 640, 697
BspPI GGATC 5 cut(s) 521, 534, 540, 726, 1088
BspT107I GGYRCC 2 cut(s) 354, 638
BspTNI GGTCTC 2 cut(s) 173, 846
BsrDI GCAATG 1 cut(s) 910
BsrFI RCCGGY 2 cut(s) 451, 1065
BsrI ACTGG 2 cut(s) 257, 676
BssAI RCCGGY 2 cut(s) 451, 1065
BssECI CCNNGG 7 cut(s) 229, 438, 692, 699, 746, 858, 1027
BssMI GATC 7 cut(s) 366, 370, 526, 532, 718, 895, 1080
BssNI GRCGYC 2 cut(s) 270, 435
BssT1I CCWWGG 2 cut(s) 438, 699
Bst2UI CCWGG 3 cut(s) 379, 693, 747
Bst4CI ACNGT 2 cut(s) 15, 184
Bst6I CTCTTC 6 cut(s) 458, 486, 492, 510, 569, 821
BstACI GRCGYC 2 cut(s) 270, 435
BstAPI GCANNNNNTGC 1 cut(s) 70
BstC8I GCNNGC 3 cut(s) 66, 78, 453
BstDEI CTNAG 6 cut(s) 363, 554, 687, 780, 952, 1094
BstDSI CCRYGG 3 cut(s) 229, 438, 858
BstF5I GGATG 8 cut(s) 36, 435, 738, 742, 844, 868, 916, 1020
BstFNI CGCG 2 cut(s) 207, 305
BstKTI GATC 7 cut(s) 369, 373, 529, 535, 721, 898, 1083
BstMAI GTCTC 2 cut(s) 173, 846
BstMBI GATC 7 cut(s) 366, 370, 526, 532, 718, 895, 1080
BstMCI CGRYCG 1 cut(s) 373
BstMWI GCNNNNNNNGC 7 cut(s) 70, 86, 118, 302, 311, 349, 1071
BstNI CCWGG 3 cut(s) 379, 693, 747
BstSCI CCNGG 7 cut(s) 84, 288, 377, 484, 691, 745, 814
BstUI CGCG 2 cut(s) 207, 305
BstV1I GCAGC 3 cut(s) 280, 467, 1074
BstV2I GAAGAC 2 cut(s) 9, 314
BstX2I RGATCY 1 cut(s) 526
BstYI RGATCY 1 cut(s) 526
Bsu15I ATCGAT 1 cut(s) 369
BsuI GTATCC 1 cut(s) 717
BsuRI GGCC 7 cut(s) 68, 89, 245, 266, 451, 814, 1008
BsuTUI ATCGAT 1 cut(s) 369
BtgI CCRYGG 3 cut(s) 229, 438, 858
BtrI CACGTC 2 cut(s) 262, 405
BtsCI GGATG 8 cut(s) 36, 435, 738, 742, 844, 868, 916, 1020
BtsIMutI CAGTG 2 cut(s) 250, 326
Cac8I GCNNGC 3 cut(s) 66, 78, 453
Cfr10I RCCGGY 2 cut(s) 451, 1065
Cfr13I GGNCC 7 cut(s) 55, 88, 168, 415, 449, 696, 813
ClaI ATCGAT 1 cut(s) 369
CseI GACGC 2 cut(s) 278, 443
Csp6I GTAC 2 cut(s) 217, 355
CviAII CATG 1 cut(s) 439
CviQI GTAC 2 cut(s) 217, 355
DdeI CTNAG 6 cut(s) 363, 554, 687, 780, 952, 1094
DpnI GATC 7 cut(s) 368, 372, 528, 534, 720, 897, 1082
DpnII GATC 7 cut(s) 366, 370, 526, 532, 718, 895, 1080
EaeI YGGCCR 1 cut(s) 264
Eam1104I CTCTTC 6 cut(s) 458, 486, 492, 510, 569, 821
EarI CTCTTC 6 cut(s) 458, 486, 492, 510, 569, 821
EciI GGCGGA 2 cut(s) 215, 633
Ecl136II GAGCTC 1 cut(s) 541
Eco130I CCWWGG 2 cut(s) 438, 699
Eco24I GRGCYC 1 cut(s) 543
Eco31I GGTCTC 2 cut(s) 173, 846
Eco47I GGWCC 4 cut(s) 55, 168, 415, 696
Eco53kI GAGCTC 1 cut(s) 541
Eco88I CYCGRG 1 cut(s) 1026
EcoICRI GAGCTC 1 cut(s) 541
EcoRI GAATTC 3 cut(s) 736, 754, 802
EcoRII CCWGG 3 cut(s) 377, 691, 745
EcoT14I CCWWGG 2 cut(s) 438, 699
EcoT38I GRGCYC 1 cut(s) 543
ErhI CCWWGG 2 cut(s) 438, 699
FaeI CATG 1 cut(s) 442
FaiI YATR 9 cut(s) 440, 546, 572, 581, 594, 683, 771, 1034, 1085
FaqI GGGAC 4 cut(s) 154, 468, 709, 1104
FatI CATG 1 cut(s) 438
FauI CCCGC 4 cut(s) 30, 141, 152, 310
Fnu4HI GCNGC 5 cut(s) 74, 148, 294, 456, 1063
FokI GGATG 8 cut(s) 23, 442, 729, 745, 851, 875, 923, 1007
FriOI GRGCYC 1 cut(s) 543
Fsp4HI GCNGC 5 cut(s) 74, 148, 294, 456, 1063
GluI GCNGC 5 cut(s) 74, 148, 294, 456, 1063
GsaI CCCAGC 2 cut(s) 112, 462
HaeIII GGCC 7 cut(s) 68, 89, 245, 266, 451, 814, 1008
HgaI GACGC 2 cut(s) 278, 443
Hin1I GRCGYC 2 cut(s) 270, 435
Hin1II CATG 1 cut(s) 442
HinfI GANTC 5 cut(s) 32, 197, 399, 664, 948
HphI GGTGA 1 cut(s) 796
Hpy166II GTNNAC 2 cut(s) 418, 1142
Hpy188I TCNGA 5 cut(s) 55, 478, 711, 723, 992
Hpy188III TCNNGA 6 cut(s) 346, 396, 530, 536, 655, 730
Hpy8I GTNNAC 2 cut(s) 418, 1142
Hpy99I CGWCG 6 cut(s) 179, 272, 278, 285, 409, 412
HpyAV CCTTC 4 cut(s) 147, 439, 974, 998
HpyCH4III ACNGT 2 cut(s) 15, 184
HpyCH4IV ACGT 2 cut(s) 261, 404
HpyCH4V TGCA 1 cut(s) 1049
HpyF10VI GCNNNNNNNGC 7 cut(s) 70, 86, 118, 302, 311, 349, 1071
HpyF3I CTNAG 6 cut(s) 363, 554, 687, 780, 952, 1094
HpySE526I ACGT 2 cut(s) 261, 404
Hsp92I GRCGYC 2 cut(s) 270, 435
Hsp92II CATG 1 cut(s) 442
Kpn2I TCCGGA 2 cut(s) 345, 529
KpnI GGTACC 1 cut(s) 358
KroI GCCGGC 1 cut(s) 451
KroNI GCCGGC 1 cut(s) 453
Kzo9I GATC 7 cut(s) 366, 370, 526, 532, 718, 895, 1080
LmnI GCTCC 4 cut(s) 348, 538, 550, 866
Lsp1109I GCAGC 3 cut(s) 280, 467, 1074
LweI GCATC 3 cut(s) 275, 375, 751
MaeII ACGT 2 cut(s) 261, 404
MaeIII GTNAC 1 cut(s) 326
MalI GATC 7 cut(s) 368, 372, 528, 534, 720, 897, 1082
MboI GATC 7 cut(s) 366, 370, 526, 532, 718, 895, 1080
MflI RGATCY 1 cut(s) 526
MhlI GDGCHC 1 cut(s) 543
MluCI AATT 9 cut(s) 472, 725, 736, 754, 802, 961, 1110, 1120, 1159
MlyI GAGTC 3 cut(s) 26, 191, 942
MmeI TCCRAC 1 cut(s) 692
MroI TCCGGA 2 cut(s) 345, 529
MroNI GCCGGC 1 cut(s) 451
MseI TTAA 2 cut(s) 1109, 1131
MspA1I CMGCKG 2 cut(s) 97, 458
MspR9I CCNGG 7 cut(s) 86, 290, 379, 486, 693, 747, 816
Mva1269I GAATGC 1 cut(s) 1021
MvaI CCWGG 3 cut(s) 379, 693, 747
MvnI CGCG 2 cut(s) 207, 305
MwoI GCNNNNNNNGC 7 cut(s) 70, 86, 118, 302, 311, 349, 1071
NaeI GCCGGC 1 cut(s) 453
NciI CCSGG 4 cut(s) 86, 290, 486, 816
NcoI CCATGG 1 cut(s) 438
NdeII GATC 7 cut(s) 366, 370, 526, 532, 718, 895, 1080
NgoMIV GCCGGC 1 cut(s) 451
NlaIII CATG 1 cut(s) 442
NlaIV GGNNCC 9 cut(s) 57, 90, 170, 356, 416, 450, 528, 640, 697
NmuCI GTSAC 1 cut(s) 326
PcsI WCGNNNNNNNCGW 2 cut(s) 180, 510
PctI GAATGC 1 cut(s) 1021
PdiI GCCGGC 1 cut(s) 453
PfeI GAWTC 2 cut(s) 399, 664
PflFI GACNNNGTC 1 cut(s) 272
PflMI CCANNNNNTGG 1 cut(s) 252
PkrI GCNGC 5 cut(s) 75, 149, 295, 457, 1064
Ple19I CGATCG 1 cut(s) 373
PleI GAGTC 3 cut(s) 26, 191, 942
PpsI GAGTC 3 cut(s) 26, 191, 942
Psp124BI GAGCTC 1 cut(s) 543
Psp6I CCWGG 3 cut(s) 377, 691, 745
PspFI CCCAGC 2 cut(s) 108, 458
PspGI CCWGG 3 cut(s) 377, 691, 745
PspN4I GGNNCC 9 cut(s) 57, 90, 170, 356, 416, 450, 528, 640, 697
PspPI GGNCC 7 cut(s) 55, 88, 168, 415, 449, 696, 813
PsuI RGATCY 1 cut(s) 526
PsyI GACNNNGTC 1 cut(s) 272
PvuI CGATCG 1 cut(s) 373
PvuII CAGCTG 1 cut(s) 458
RsaI GTAC 2 cut(s) 218, 356
RsaNI GTAC 2 cut(s) 217, 355
SacI GAGCTC 1 cut(s) 543
SaqAI TTAA 2 cut(s) 1109, 1131
SatI GCNGC 5 cut(s) 74, 148, 294, 456, 1063
Sau3AI GATC 7 cut(s) 366, 370, 526, 532, 718, 895, 1080
Sau96I GGNCC 7 cut(s) 55, 88, 168, 415, 449, 696, 813
SchI GAGTC 3 cut(s) 26, 191, 942
ScrFI CCNGG 7 cut(s) 86, 290, 379, 486, 693, 747, 816
SduI GDGCHC 1 cut(s) 543
SfaNI GCATC 3 cut(s) 275, 375, 751
SinI GGWCC 4 cut(s) 55, 168, 415, 696
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 9 cut(s) 472, 725, 736, 754, 802, 961, 1110, 1120, 1159
SstI GAGCTC 1 cut(s) 543
StyD4I CCNGG 7 cut(s) 84, 288, 377, 484, 691, 745, 814
StyI CCWWGG 2 cut(s) 438, 699
TaaI ACNGT 2 cut(s) 15, 184
TaiI ACGT 2 cut(s) 264, 407
TaqI TCGA 7 cut(s) 280, 369, 373, 383, 566, 752, 898
TasI AATT 9 cut(s) 472, 725, 736, 754, 802, 961, 1110, 1120, 1159
TauI GCSGC 2 cut(s) 76, 150
TfiI GAWTC 2 cut(s) 399, 664
Tru1I TTAA 2 cut(s) 1109, 1131
Tru9I TTAA 2 cut(s) 1109, 1131
TscAI CASTG 2 cut(s) 257, 326
TseFI GTSAC 1 cut(s) 326
TseI GCWGC 3 cut(s) 293, 455, 1062
Tsp45I GTSAC 1 cut(s) 326
TspDTI ATGAA 4 cut(s) 587, 749, 888, 939
TspGWI ACGGA 1 cut(s) 948
TspRI CASTG 2 cut(s) 257, 326
Tth111I GACNNNGTC 1 cut(s) 272
Van91I CCANNNNNTGG 1 cut(s) 252
VpaK11BI GGWCC 4 cut(s) 55, 168, 415, 696
XapI RAATTY 5 cut(s) 472, 725, 736, 754, 802
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.