Rh1BG161400
MYB Family

Alcohol dehydrogenase transcription factor Myb/SANT-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0010006
Physical Location & Seq
Forward (+)
26040939 .. 26042039
1101 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG161400.1

Sequence Viewer

Length: 1101 bp
ATGGCTTCTTCTCCTCCCTCTTCTCCCCAAGACGACGCCCTCATTCCTCTCCAGTCCGATCCGCCTCAGGCCGTCCCCCTCGCCCTCCCGGCCCCTCCTCCGCCGCAGCTCACTCCGGCCTCGGCGCCTCCGCCCTCCTCCCGCCGCCTCCCCCCTCCCTGCTGGTCCCACGACGAGACCGTCGCCCTCATCGACTCCTACCGCGACAAGTGGTACTCCCTCCGCCGCGGCAACCTCAAGGCCACGCACTGGCAGGACGTCGCCGACGCCGTCTCCCGCCGCTGTCCGGCCGCCTCCCCGGCCAAGACCGCCGTCCAGTGCCGCCATAAGATGGAGAAGCTCCGGAAGCGGTACCGGACCGAGATCCAGAGGGCCAAGTCGATGCCCTTGTCCAGGTTCACGTCTTCCTGGGTCCACTTCAAGAGAATGGACGCCATGGAGAAAGGTCCGGCGGCTTTGAAGAACGAGAATTCGGACAGTCCCGGCGACGACGGCGAGGATGAGGAGAACGATGAGGAGGACGATCAGGATCAGGAGTTGTATGAGGAGTTGAGGTATGGGTCGAATATGAAGAGTATGAGTAAGATGTATAGGAATGGAGTTGGGGTTGGGGTTGGGGGGAGTGGTGGCAGCAGTGTTGGTGGCGGGAGTGGTGGGTTTAGGATTAGGATTCCGACTGGGGTTAGTATAGCTCAGCCTGGGAACAAGGTTTATCCGAAGATGGATGCGAAATTCGGGTTGAATTCGCACCCGGGGTCGCATTCAGGGCCGAGTTATGCTACTGCTAAGGTGATGAGAGAGTGCAATAATAATGCAGGGGGGAGAAGTGGGGGGTTGGGGAAGAGGGAGAGGGAAAGAGAGAGGGAGAGAGACCCTGTGGCGGAGATGGTGTCGGCCATTAAGGTTTTGGGAGATGGGTTTGTGAGGATGGAGCAGATGAAGATGGAGATGGCCAGGGAGATTGAGACTATGAGAATGGAGATGGAGATGAAGAGGACCGAGATGATTTTGGAGTCGCAGCAGCGGATTGTGGAGGCCTTTGCAAAGGCTGTATCGGAGAAGAAGAAGAAGGCTAAGAGAATGCCGTCGCCTGAGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

366

Amino Acids

40.45

Weight (kDa)

9.09

Isoelectric Point (pI)

69.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 53 - 146 1.1e-17 Myb/SANT-like DNA-binding domain
MADF_DNA_bdg PF10545 75 - 145 3.6e-09 Alcohol dehydrogenase transcription factor Myb/SANT-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 179
AatII GACGTC 1 cut(s) 261
Acc65I GGTACC 1 cut(s) 351
AccB1I GGYRCC 2 cut(s) 124, 351
AccB7I CCANNNNNTGG 2 cut(s) 249, 331
AccII CGCG 2 cut(s) 204, 228
AccIII TCCGGA 1 cut(s) 342
AclWI GGATC 3 cut(s) 53, 358, 537
AcoI YGGCCR 4 cut(s) 288, 300, 894, 951
AcsI RAATTY 3 cut(s) 469, 731, 742
AcyI GRCGYC 5 cut(s) 36, 125, 258, 267, 432
AfaI GTAC 2 cut(s) 215, 353
AfiI CCNNNNNNNGG 5 cut(s) 249, 286, 331, 393, 880
AgsI TTSAA 3 cut(s) 421, 460, 742
AjiI CACGTC 1 cut(s) 402
AjnI CCWGG 4 cut(s) 392, 407, 697, 953
AluBI AGCT 3 cut(s) 109, 340, 692
AluI AGCT 3 cut(s) 109, 340, 692
Alw26I GTCTC 4 cut(s) 170, 277, 864, 959
AlwI GGATC 3 cut(s) 53, 358, 537
Ama87I CYCGRG 1 cut(s) 751
Aor13HI TCCGGA 1 cut(s) 342
ApeKI GCWGC 4 cut(s) 106, 630, 1018, 1021
ApoI RAATTY 3 cut(s) 469, 731, 742
Asp718I GGTACC 1 cut(s) 351
AspLEI GCGC 1 cut(s) 127
AspS9I GGNCC 8 cut(s) 91, 165, 357, 372, 412, 446, 767, 996
AsuC2I CCSGG 5 cut(s) 89, 299, 483, 752, 753
AsuHPI GGTGA 1 cut(s) 802
AvaI CYCGRG 1 cut(s) 751
AvaII GGWCC 5 cut(s) 165, 357, 412, 446, 996
AxyI CCTNAGG 2 cut(s) 66, 1092
BalI TGGCCA 1 cut(s) 953
BanI GGYRCC 2 cut(s) 124, 351
BbsI GAAGAC 1 cut(s) 396
BbvI GCAGC 4 cut(s) 118, 642, 1030, 1033
BccI CCATC 8 cut(s) 325, 715, 880, 908, 922, 937, 943, 976
BceAI ACGGC 5 cut(s) 56, 254, 296, 508, 1069
BciT130I CCWGG 4 cut(s) 394, 409, 699, 955
BcnI CCSGG 5 cut(s) 89, 299, 483, 752, 753
BcoDI GTCTC 4 cut(s) 170, 277, 864, 959
BfoI RGCGCY 1 cut(s) 128
BglI GCCNNNNNGGC 2 cut(s) 89, 299
BlpI GCTNAGC 1 cut(s) 693
Bme1390I CCNGG 9 cut(s) 89, 299, 394, 409, 483, 699, 752, 753, 955
Bme18I GGWCC 5 cut(s) 165, 357, 412, 446, 996
BmeT110I CYCGRG 1 cut(s) 751
BmgBI CACGTC 1 cut(s) 402
BmgT120I GGNCC 8 cut(s) 91, 165, 357, 372, 412, 446, 767, 996
BmiI GGNNCC 5 cut(s) 93, 126, 167, 353, 413
BmrFI CCNGG 9 cut(s) 89, 299, 394, 409, 483, 699, 752, 753, 955
BmrI ACTGGG 1 cut(s) 687
BmsI GCATC 2 cut(s) 372, 715
BmuI ACTGGG 1 cut(s) 687
BoxI GACNNNNGTC 1 cut(s) 311
BpiI GAAGAC 1 cut(s) 396
BpmI CTGGAG 1 cut(s) 35
Bpu10I CCTNAGC 1 cut(s) 786
Bpu1102I GCTNAGC 1 cut(s) 693
BpuEI CTTGAG 1 cut(s) 221
BpuMI CCSGG 5 cut(s) 89, 299, 483, 752, 753
BsaBI GATNNNNATC 1 cut(s) 528
BsaHI GRCGYC 5 cut(s) 36, 125, 258, 267, 432
BsaI GGTCTC 2 cut(s) 170, 864
BsaJI CCNNGG 9 cut(s) 120, 226, 297, 408, 435, 698, 751, 752, 954
BsaWI WCCGGW 2 cut(s) 342, 354
BsaXI ACNNNNNCTCC 8 cut(s) 257, 287, 539, 569, 591, 621, 875, 905
Bsc4I CCNNNNNNNGG 5 cut(s) 249, 286, 331, 393, 880
Bse1I ACTGG 4 cut(s) 52, 254, 316, 682
Bse21I CCTNAGG 2 cut(s) 66, 1092
Bse8I GATNNNNATC 1 cut(s) 528
BseAI TCCGGA 1 cut(s) 342
BseBI CCWGG 4 cut(s) 394, 409, 699, 955
BseDI CCNNGG 9 cut(s) 120, 226, 297, 408, 435, 698, 751, 752, 954
BseGI GGATG 3 cut(s) 505, 730, 933
BseJI GATNNNNATC 1 cut(s) 528
BseLI CCNNNNNNNGG 5 cut(s) 249, 286, 331, 393, 880
BseMII CTCAG 3 cut(s) 80, 707, 1083
BseNI ACTGG 4 cut(s) 52, 254, 316, 682
BseRI GAGGAG 5 cut(s) 87, 127, 518, 530, 560
BseX3I CGGCCG 1 cut(s) 288
BseXI GCAGC 4 cut(s) 118, 642, 1030, 1033
Bsh1236I CGCG 2 cut(s) 204, 228
Bsh1285I CGRYCG 1 cut(s) 291
BshNI GGYRCC 2 cut(s) 124, 351
BsiEI CGRYCG 1 cut(s) 291
BsiHKCI CYCGRG 1 cut(s) 751
BsiSI CCGG 9 cut(s) 89, 116, 287, 299, 343, 355, 449, 483, 752
BslFI GGGAC 3 cut(s) 59, 151, 465
BslI CCNNNNNNNGG 5 cut(s) 249, 286, 331, 393, 880
BsmAI GTCTC 4 cut(s) 170, 277, 864, 959
BsmBI CGTCTC 1 cut(s) 277
BsmFI GGGAC 3 cut(s) 59, 151, 465
BsmI GAATGC 2 cut(s) 760, 1086
Bso31I GGTCTC 2 cut(s) 170, 864
BsoBI CYCGRG 1 cut(s) 751
Bsp13I TCCGGA 1 cut(s) 342
Bsp143I GATC 4 cut(s) 58, 363, 523, 529
Bsp1720I GCTNAGC 1 cut(s) 693
Bsp19I CCATGG 1 cut(s) 435
BspCNI CTCAG 3 cut(s) 79, 706, 1084
BspEI TCCGGA 1 cut(s) 342
BspFNI CGCG 2 cut(s) 204, 228
BspLI GGNNCC 5 cut(s) 93, 126, 167, 353, 413
BspPI GGATC 3 cut(s) 53, 358, 537
BspT107I GGYRCC 2 cut(s) 124, 351
BspTNI GGTCTC 2 cut(s) 170, 864
BsrI ACTGG 4 cut(s) 52, 254, 316, 682
BssECI CCNNGG 9 cut(s) 120, 226, 297, 408, 435, 698, 751, 752, 954
BssMI GATC 4 cut(s) 58, 363, 523, 529
BssNI GRCGYC 5 cut(s) 36, 125, 258, 267, 432
BssT1I CCWWGG 1 cut(s) 435
Bst2UI CCWGG 4 cut(s) 394, 409, 699, 955
Bst4CI ACNGT 2 cut(s) 181, 479
Bst6I CTCTTC 4 cut(s) 25, 566, 836, 986
BstACI GRCGYC 5 cut(s) 36, 125, 258, 267, 432
BstDEI CTNAG 6 cut(s) 66, 693, 786, 1074, 1092, 1098
BstDSI CCRYGG 2 cut(s) 226, 435
BstENI CCTNNNNNAGG 1 cut(s) 391
BstF5I GGATG 3 cut(s) 505, 730, 933
BstFNI CGCG 2 cut(s) 204, 228
BstH2I RGCGCY 1 cut(s) 128
BstHHI GCGC 1 cut(s) 127
BstKTI GATC 4 cut(s) 61, 366, 526, 532
BstMAI GTCTC 4 cut(s) 170, 277, 864, 959
BstMBI GATC 4 cut(s) 58, 363, 523, 529
BstMCI CGRYCG 1 cut(s) 291
BstMWI GCNNNNNNNGC 6 cut(s) 89, 299, 308, 346, 492, 766
BstNI CCWGG 4 cut(s) 394, 409, 699, 955
BstPAI GACNNNNGTC 1 cut(s) 311
BstSCI CCNGG 9 cut(s) 87, 297, 392, 407, 481, 697, 750, 751, 953
BstUI CGCG 2 cut(s) 204, 228
BstV1I GCAGC 4 cut(s) 118, 642, 1030, 1033
BstV2I GAAGAC 1 cut(s) 396
BstX2I RGATCY 1 cut(s) 363
BstYI RGATCY 1 cut(s) 363
BstZI CGGCCG 1 cut(s) 288
Bsu36I CCTNAGG 2 cut(s) 66, 1092
BtgI CCRYGG 2 cut(s) 226, 435
BtrI CACGTC 1 cut(s) 402
BtsCI GGATG 3 cut(s) 505, 730, 933
BtsI GCAGTG 1 cut(s) 640
BtsIMutI CAGTG 3 cut(s) 247, 323, 640
CfoI GCGC 1 cut(s) 127
Cfr13I GGNCC 8 cut(s) 91, 165, 357, 372, 412, 446, 767, 996
Cfr42I CCGCGG 1 cut(s) 229
Cfr9I CCCGGG 1 cut(s) 751
CpoI CGGWCCG 1 cut(s) 357
CseI GACGC 3 cut(s) 44, 275, 440
Csp6I GTAC 2 cut(s) 214, 352
CspI CGGWCCG 1 cut(s) 357
CviAII CATG 1 cut(s) 436
CviQI GTAC 2 cut(s) 214, 352
DdeI CTNAG 6 cut(s) 66, 693, 786, 1074, 1092, 1098
DinI GGCGCC 1 cut(s) 126
DpnI GATC 4 cut(s) 60, 365, 525, 531
DpnII GATC 4 cut(s) 58, 363, 523, 529
DrdI GACNNNNNNGTC 1 cut(s) 179
DseDI GACNNNNNNGTC 1 cut(s) 179
EaeI YGGCCR 4 cut(s) 288, 300, 894, 951
EagI CGGCCG 1 cut(s) 288
Eam1104I CTCTTC 4 cut(s) 25, 566, 836, 986
EarI CTCTTC 4 cut(s) 25, 566, 836, 986
EciI GGCGGA 5 cut(s) 51, 90, 120, 212, 896
EclXI CGGCCG 1 cut(s) 288
Eco130I CCWWGG 1 cut(s) 435
Eco147I AGGCCT 1 cut(s) 1037
Eco31I GGTCTC 2 cut(s) 170, 864
Eco47I GGWCC 5 cut(s) 165, 357, 412, 446, 996
Eco52I CGGCCG 1 cut(s) 288
Eco81I CCTNAGG 2 cut(s) 66, 1092
Eco88I CYCGRG 1 cut(s) 751
EcoNI CCTNNNNNAGG 1 cut(s) 391
EcoRI GAATTC 2 cut(s) 469, 742
EcoRII CCWGG 4 cut(s) 392, 407, 697, 953
EcoT14I CCWWGG 1 cut(s) 435
EgeI GGCGCC 1 cut(s) 126
EheI GGCGCC 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 435
Esp3I CGTCTC 1 cut(s) 277
FaeI CATG 1 cut(s) 439
FaqI GGGAC 3 cut(s) 59, 151, 465
FatI CATG 1 cut(s) 435
FauI CCCGC 3 cut(s) 149, 284, 638
FokI GGATG 3 cut(s) 512, 737, 940
GlaI GCGC 1 cut(s) 126
GsuI CTGGAG 1 cut(s) 35
HaeII RGCGCY 1 cut(s) 128
HapII CCGG 9 cut(s) 89, 116, 287, 299, 343, 355, 449, 483, 752
HgaI GACGC 3 cut(s) 44, 275, 440
HhaI GCGC 1 cut(s) 127
Hin1I GRCGYC 5 cut(s) 36, 125, 258, 267, 432
Hin1II CATG 1 cut(s) 439
Hin6I GCGC 1 cut(s) 125
HinP1I GCGC 1 cut(s) 125
HinfI GANTC 3 cut(s) 194, 670, 1013
HpaII CCGG 9 cut(s) 89, 116, 287, 299, 343, 355, 449, 483, 752
HphI GGTGA 1 cut(s) 802
Hpy166II GTNNAC 2 cut(s) 399, 415
Hpy188I TCNGA 5 cut(s) 58, 475, 675, 717, 1057
Hpy188III TCNNGA 5 cut(s) 343, 367, 421, 527, 533
Hpy8I GTNNAC 2 cut(s) 399, 415
Hpy99I CGWCG 8 cut(s) 38, 176, 185, 263, 269, 491, 494, 1090
HpyAV CCTTC 1 cut(s) 1063
HpyCH4III ACNGT 2 cut(s) 181, 479
HpyCH4IV ACGT 2 cut(s) 258, 401
HpyCH4V TGCA 3 cut(s) 804, 815, 1043
HpyF10VI GCNNNNNNNGC 6 cut(s) 89, 299, 308, 346, 492, 766
HpyF3I CTNAG 6 cut(s) 66, 693, 786, 1074, 1092, 1098
HpySE526I ACGT 2 cut(s) 258, 401
Hsp92I GRCGYC 5 cut(s) 36, 125, 258, 267, 432
Hsp92II CATG 1 cut(s) 439
HspAI GCGC 1 cut(s) 125
KasI GGCGCC 1 cut(s) 124
Kpn2I TCCGGA 1 cut(s) 342
KpnI GGTACC 1 cut(s) 355
KspI CCGCGG 1 cut(s) 229
Kzo9I GATC 4 cut(s) 58, 363, 523, 529
LmnI GCTCC 2 cut(s) 345, 931
Lsp1109I GCAGC 4 cut(s) 118, 642, 1030, 1033
LweI GCATC 2 cut(s) 372, 715
MaeII ACGT 2 cut(s) 258, 401
MalI GATC 4 cut(s) 60, 365, 525, 531
MboI GATC 4 cut(s) 58, 363, 523, 529
MflI RGATCY 1 cut(s) 363
MlsI TGGCCA 1 cut(s) 953
MluCI AATT 3 cut(s) 469, 731, 742
MluNI TGGCCA 1 cut(s) 953
Mly113I GGCGCC 1 cut(s) 125
MlyI GAGTC 2 cut(s) 188, 1022
MmeI TCCRAC 1 cut(s) 698
Mox20I TGGCCA 1 cut(s) 953
MroI TCCGGA 1 cut(s) 342
MscI TGGCCA 1 cut(s) 953
MseI TTAA 1 cut(s) 900
Msp20I TGGCCA 1 cut(s) 953
MspA1I CMGCKG 3 cut(s) 228, 282, 1024
MspI CCGG 9 cut(s) 89, 116, 287, 299, 343, 355, 449, 483, 752
MspR9I CCNGG 9 cut(s) 89, 299, 394, 409, 483, 699, 752, 753, 955
Mva1269I GAATGC 2 cut(s) 760, 1086
MvaI CCWGG 4 cut(s) 394, 409, 699, 955
MvnI CGCG 2 cut(s) 204, 228
MwoI GCNNNNNNNGC 6 cut(s) 89, 299, 308, 346, 492, 766
NarI GGCGCC 1 cut(s) 125
NciI CCSGG 5 cut(s) 89, 299, 483, 752, 753
NcoI CCATGG 1 cut(s) 435
NdeII GATC 4 cut(s) 58, 363, 523, 529
NlaIII CATG 1 cut(s) 439
NlaIV GGNNCC 5 cut(s) 93, 126, 167, 353, 413
NmeAIII GCCGAG 2 cut(s) 101, 795
PceI AGGCCT 1 cut(s) 1037
PcsI WCGNNNNNNNCGW 3 cut(s) 177, 189, 267
PctI GAATGC 2 cut(s) 760, 1086
PfeI GAWTC 1 cut(s) 670
PflFI GACNNNGTC 1 cut(s) 269
PflMI CCANNNNNTGG 2 cut(s) 249, 331
PleI GAGTC 2 cut(s) 188, 1021
PluTI GGCGCC 1 cut(s) 128
PpsI GAGTC 2 cut(s) 188, 1021
PshAI GACNNNNGTC 1 cut(s) 311
Psp6I CCWGG 4 cut(s) 392, 407, 697, 953
PspGI CCWGG 4 cut(s) 392, 407, 697, 953
PspN4I GGNNCC 5 cut(s) 93, 126, 167, 353, 413
PspPI GGNCC 8 cut(s) 91, 165, 357, 372, 412, 446, 767, 996
PsuI RGATCY 1 cut(s) 363
PsyI GACNNNGTC 1 cut(s) 269
RsaI GTAC 2 cut(s) 215, 353
RsaNI GTAC 2 cut(s) 214, 352
Rsr2I CGGWCCG 1 cut(s) 357
RsrII CGGWCCG 1 cut(s) 357
SacII CCGCGG 1 cut(s) 229
SaqAI TTAA 1 cut(s) 900
Sau3AI GATC 4 cut(s) 58, 363, 523, 529
Sau96I GGNCC 8 cut(s) 91, 165, 357, 372, 412, 446, 767, 996
SchI GAGTC 2 cut(s) 188, 1022
ScrFI CCNGG 9 cut(s) 89, 299, 394, 409, 483, 699, 752, 753, 955
SfaNI GCATC 2 cut(s) 372, 715
SfoI GGCGCC 1 cut(s) 126
Sfr303I CCGCGG 1 cut(s) 229
SgrBI CCGCGG 1 cut(s) 229
SinI GGWCC 5 cut(s) 165, 357, 412, 446, 996
SmaI CCCGGG 1 cut(s) 753
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
Sse9I AATT 3 cut(s) 469, 731, 742
SseBI AGGCCT 1 cut(s) 1037
SspDI GGCGCC 1 cut(s) 124
StuI AGGCCT 1 cut(s) 1037
StyD4I CCNGG 9 cut(s) 87, 297, 392, 407, 481, 697, 750, 751, 953
StyI CCWWGG 1 cut(s) 435
TaaI ACNGT 2 cut(s) 181, 479
TaiI ACGT 2 cut(s) 261, 404
TaqI TCGA 3 cut(s) 192, 380, 563
TaqII GACCGA 2 cut(s) 374, 1013
TasI AATT 3 cut(s) 469, 731, 742
TauI GCSGC 8 cut(s) 106, 147, 228, 231, 282, 293, 324, 455
TfiI GAWTC 1 cut(s) 670
Tru1I TTAA 1 cut(s) 900
Tru9I TTAA 1 cut(s) 900
TscAI CASTG 3 cut(s) 254, 323, 640
TseI GCWGC 4 cut(s) 106, 630, 1018, 1021
TspDTI ATGAA 3 cut(s) 584, 953, 1004
TspMI CCCGGG 1 cut(s) 751
TspRI CASTG 3 cut(s) 254, 323, 640
Tth111I GACNNNGTC 1 cut(s) 269
Van91I CCANNNNNTGG 2 cut(s) 249, 331
VpaK11BI GGWCC 5 cut(s) 165, 357, 412, 446, 996
XagI CCTNNNNNAGG 1 cut(s) 391
XapI RAATTY 3 cut(s) 469, 731, 742
XcmI CCANNNNNNNNNTGG 1 cut(s) 904
XmaI CCCGGG 1 cut(s) 751
ZraI GACGTC 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.