RchiOBHm_Chr1g0345291
MYB Family

Alcohol dehydrogenase transcription factor Myb/SANT-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0010006
Physical Location & Seq
Forward (+)
37702160 .. 37702884
725 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57162

Sequence Viewer

Length: 648 bp
ATGGCTTCTTCCCCTCCCTCTTCCCCCCAAGACGACGCCCTCATTCCTCTCCAGTCCGATCCGCCGCAGGCCGTCCCCCTCGCCCTCCCGGCCCCTCCTCCGCCGCAGCTCACTCCGGCCTCGGCGCCTCCGCCCTCCTCCCGCCGCCTCCCCCCTCCCTGCTGGTCCCACGACGAGACCGTCGCCCTCATCGACTCCTACCGCGACAAGTGGTACTCCCTCCGCCGCGGCAACCTCAAGGCCACGCACTGGCAGGACGTCGCCGACGCCGTCTCCCGCCGATGTCCGGCCGCCTCCCCGGCCAAGACCGCCGTCCAGTGCCGCCATAAGATGGAGAAGCTCCGGAAGCGGTACCGGACCGAGATCCAGCGGGCCAAGTCGATGCCCTTGTCCAGGTTCACGTCTTCTTGGGTCCACTTCAAGAGAATGGACGCCATGGAGAAAGGTCCGGCGGCTTTGAAGAACGAGAATTCGGATAGTCCCGGCGAGGACGGCGAGGATGAGGAGAACGATGAGGAGGACGATCAGGATCAGGAGTTGTATGAGGAGTTGAGGTATGGGTCGAATATGAAGAGTATGAGTAAGATGTACAGGAATGGAGTTGGGGTTGGGGTTGGGGGGAGTGGATTCCGACTGGGGTTAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

215

Amino Acids

23.89

Weight (kDa)

6.44

Isoelectric Point (pI)

79.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 53 - 146 3.5e-18 Myb/SANT-like DNA-binding domain
MADF_DNA_bdg PF10545 75 - 145 2e-09 Alcohol dehydrogenase transcription factor Myb/SANT-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 179
AatII GACGTC 1 cut(s) 261
Acc65I GGTACC 1 cut(s) 351
AccB1I GGYRCC 2 cut(s) 124, 351
AccB7I CCANNNNNTGG 2 cut(s) 249, 331
AccII CGCG 2 cut(s) 204, 228
AccIII TCCGGA 1 cut(s) 342
AclWI GGATC 3 cut(s) 53, 358, 537
AcoI YGGCCR 2 cut(s) 288, 300
AcsI RAATTY 1 cut(s) 469
AcyI GRCGYC 5 cut(s) 36, 125, 258, 267, 432
AfaI GTAC 3 cut(s) 215, 353, 590
AfiI CCNNNNNNNGG 4 cut(s) 249, 286, 331, 393
AgsI TTSAA 2 cut(s) 421, 460
AjiI CACGTC 1 cut(s) 402
AjnI CCWGG 1 cut(s) 392
AluBI AGCT 2 cut(s) 109, 340
AluI AGCT 2 cut(s) 109, 340
Alw26I GTCTC 2 cut(s) 170, 277
AlwI GGATC 3 cut(s) 53, 358, 537
Aor13HI TCCGGA 1 cut(s) 342
AoxI GGCC 7 cut(s) 69, 90, 117, 240, 288, 300, 372
ApeKI GCWGC 1 cut(s) 106
ApoI RAATTY 1 cut(s) 469
Asp718I GGTACC 1 cut(s) 351
AspLEI GCGC 1 cut(s) 127
AspS9I GGNCC 6 cut(s) 91, 165, 357, 372, 412, 446
AsuC2I CCSGG 3 cut(s) 89, 299, 483
AvaII GGWCC 4 cut(s) 165, 357, 412, 446
BanI GGYRCC 2 cut(s) 124, 351
BbsI GAAGAC 1 cut(s) 396
BbvI GCAGC 1 cut(s) 118
BccI CCATC 1 cut(s) 325
BceAI ACGGC 4 cut(s) 56, 254, 296, 508
BciT130I CCWGG 1 cut(s) 394
BcnI CCSGG 3 cut(s) 89, 299, 483
BcoDI GTCTC 2 cut(s) 170, 277
BfoI RGCGCY 1 cut(s) 128
BglI GCCNNNNNGGC 2 cut(s) 89, 299
BisI GCNGC 9 cut(s) 65, 104, 107, 145, 226, 229, 291, 322, 453
BlsI GCNGC 9 cut(s) 66, 105, 108, 146, 227, 230, 292, 323, 454
Bme1390I CCNGG 4 cut(s) 89, 299, 394, 483
Bme18I GGWCC 4 cut(s) 165, 357, 412, 446
BmgBI CACGTC 1 cut(s) 402
BmgT120I GGNCC 6 cut(s) 91, 165, 357, 372, 412, 446
BmiI GGNNCC 5 cut(s) 93, 126, 167, 353, 413
BmrFI CCNGG 4 cut(s) 89, 299, 394, 483
BmrI ACTGGG 1 cut(s) 644
BmsI GCATC 1 cut(s) 372
BmuI ACTGGG 1 cut(s) 644
BoxI GACNNNNGTC 1 cut(s) 311
BpiI GAAGAC 1 cut(s) 396
BpmI CTGGAG 1 cut(s) 35
BpuEI CTTGAG 1 cut(s) 221
BpuMI CCSGG 3 cut(s) 89, 299, 483
BsaBI GATNNNNATC 1 cut(s) 528
BsaHI GRCGYC 5 cut(s) 36, 125, 258, 267, 432
BsaI GGTCTC 1 cut(s) 170
BsaJI CCNNGG 4 cut(s) 120, 226, 297, 435
BsaWI WCCGGW 2 cut(s) 342, 354
BsaXI ACNNNNNCTCC 6 cut(s) 257, 287, 539, 569, 591, 621
Bsc4I CCNNNNNNNGG 4 cut(s) 249, 286, 331, 393
Bse1I ACTGG 4 cut(s) 52, 254, 316, 639
Bse8I GATNNNNATC 1 cut(s) 528
BseAI TCCGGA 1 cut(s) 342
BseBI CCWGG 1 cut(s) 394
BseDI CCNNGG 4 cut(s) 120, 226, 297, 435
BseGI GGATG 1 cut(s) 505
BseJI GATNNNNATC 1 cut(s) 528
BseLI CCNNNNNNNGG 4 cut(s) 249, 286, 331, 393
BseNI ACTGG 4 cut(s) 52, 254, 316, 639
BseRI GAGGAG 5 cut(s) 87, 127, 518, 530, 560
BseX3I CGGCCG 1 cut(s) 288
BseXI GCAGC 1 cut(s) 118
Bsh1236I CGCG 2 cut(s) 204, 228
Bsh1285I CGRYCG 1 cut(s) 291
BshFI GGCC 7 cut(s) 71, 92, 119, 242, 290, 302, 374
BshNI GGYRCC 2 cut(s) 124, 351
BsiEI CGRYCG 1 cut(s) 291
BsiSI CCGG 8 cut(s) 89, 116, 287, 299, 343, 355, 449, 483
BslFI GGGAC 3 cut(s) 59, 151, 465
BslI CCNNNNNNNGG 4 cut(s) 249, 286, 331, 393
BsmAI GTCTC 2 cut(s) 170, 277
BsmBI CGTCTC 1 cut(s) 277
BsmFI GGGAC 3 cut(s) 59, 151, 465
BsnI GGCC 7 cut(s) 71, 92, 119, 242, 290, 302, 374
Bso31I GGTCTC 1 cut(s) 170
Bsp13I TCCGGA 1 cut(s) 342
Bsp1407I TGTACA 1 cut(s) 588
Bsp143I GATC 4 cut(s) 58, 363, 523, 529
Bsp19I CCATGG 1 cut(s) 435
BspANI GGCC 7 cut(s) 71, 92, 119, 242, 290, 302, 374
BspEI TCCGGA 1 cut(s) 342
BspFNI CGCG 2 cut(s) 204, 228
BspLI GGNNCC 5 cut(s) 93, 126, 167, 353, 413
BspPI GGATC 3 cut(s) 53, 358, 537
BspT107I GGYRCC 2 cut(s) 124, 351
BspTNI GGTCTC 1 cut(s) 170
BsrGI TGTACA 1 cut(s) 588
BsrI ACTGG 4 cut(s) 52, 254, 316, 639
BssECI CCNNGG 4 cut(s) 120, 226, 297, 435
BssMI GATC 4 cut(s) 58, 363, 523, 529
BssNI GRCGYC 5 cut(s) 36, 125, 258, 267, 432
BssT1I CCWWGG 1 cut(s) 435
Bst2UI CCWGG 1 cut(s) 394
Bst4CI ACNGT 1 cut(s) 181
Bst6I CTCTTC 2 cut(s) 25, 566
BstACI GRCGYC 5 cut(s) 36, 125, 258, 267, 432
BstAUI TGTACA 1 cut(s) 588
BstC8I GCNNGC 2 cut(s) 69, 372
BstDSI CCRYGG 2 cut(s) 226, 435
BstENI CCTNNNNNAGG 1 cut(s) 391
BstF5I GGATG 1 cut(s) 505
BstFNI CGCG 2 cut(s) 204, 228
BstH2I RGCGCY 1 cut(s) 128
BstHHI GCGC 1 cut(s) 127
BstKTI GATC 4 cut(s) 61, 366, 526, 532
BstMAI GTCTC 2 cut(s) 170, 277
BstMBI GATC 4 cut(s) 58, 363, 523, 529
BstMCI CGRYCG 1 cut(s) 291
BstMWI GCNNNNNNNGC 5 cut(s) 89, 299, 308, 346, 492
BstNI CCWGG 1 cut(s) 394
BstPAI GACNNNNGTC 1 cut(s) 311
BstSCI CCNGG 4 cut(s) 87, 297, 392, 481
BstUI CGCG 2 cut(s) 204, 228
BstV1I GCAGC 1 cut(s) 118
BstV2I GAAGAC 1 cut(s) 396
BstX2I RGATCY 1 cut(s) 363
BstYI RGATCY 1 cut(s) 363
BstZI CGGCCG 1 cut(s) 288
BsuRI GGCC 7 cut(s) 71, 92, 119, 242, 290, 302, 374
BtgI CCRYGG 2 cut(s) 226, 435
BtrI CACGTC 1 cut(s) 402
BtsCI GGATG 1 cut(s) 505
BtsIMutI CAGTG 2 cut(s) 247, 323
Cac8I GCNNGC 2 cut(s) 69, 372
CfoI GCGC 1 cut(s) 127
Cfr13I GGNCC 6 cut(s) 91, 165, 357, 372, 412, 446
Cfr42I CCGCGG 1 cut(s) 229
CpoI CGGWCCG 1 cut(s) 357
CseI GACGC 3 cut(s) 44, 275, 440
Csp6I GTAC 3 cut(s) 214, 352, 589
CspI CGGWCCG 1 cut(s) 357
CviAII CATG 1 cut(s) 436
CviQI GTAC 3 cut(s) 214, 352, 589
DinI GGCGCC 1 cut(s) 126
DpnI GATC 4 cut(s) 60, 365, 525, 531
DpnII GATC 4 cut(s) 58, 363, 523, 529
DrdI GACNNNNNNGTC 1 cut(s) 179
DseDI GACNNNNNNGTC 1 cut(s) 179
EaeI YGGCCR 2 cut(s) 288, 300
EagI CGGCCG 1 cut(s) 288
Eam1104I CTCTTC 2 cut(s) 25, 566
EarI CTCTTC 2 cut(s) 25, 566
EciI GGCGGA 4 cut(s) 51, 90, 120, 212
EclXI CGGCCG 1 cut(s) 288
Eco130I CCWWGG 1 cut(s) 435
Eco31I GGTCTC 1 cut(s) 170
Eco47I GGWCC 4 cut(s) 165, 357, 412, 446
Eco52I CGGCCG 1 cut(s) 288
EcoNI CCTNNNNNAGG 1 cut(s) 391
EcoRI GAATTC 1 cut(s) 469
EcoRII CCWGG 1 cut(s) 392
EcoT14I CCWWGG 1 cut(s) 435
EgeI GGCGCC 1 cut(s) 126
EheI GGCGCC 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 435
Esp3I CGTCTC 1 cut(s) 277
FaeI CATG 1 cut(s) 439
FaiI YATR 7 cut(s) 327, 437, 543, 558, 569, 578, 646
FaqI GGGAC 3 cut(s) 59, 151, 465
FatI CATG 1 cut(s) 435
FauI CCCGC 3 cut(s) 149, 284, 363
Fnu4HI GCNGC 9 cut(s) 65, 104, 107, 145, 226, 229, 291, 322, 453
FokI GGATG 1 cut(s) 512
Fsp4HI GCNGC 9 cut(s) 65, 104, 107, 145, 226, 229, 291, 322, 453
GlaI GCGC 1 cut(s) 126
GluI GCNGC 9 cut(s) 65, 104, 107, 145, 226, 229, 291, 322, 453
GsuI CTGGAG 1 cut(s) 35
HaeII RGCGCY 1 cut(s) 128
HaeIII GGCC 7 cut(s) 71, 92, 119, 242, 290, 302, 374
HapII CCGG 8 cut(s) 89, 116, 287, 299, 343, 355, 449, 483
HgaI GACGC 3 cut(s) 44, 275, 440
HhaI GCGC 1 cut(s) 127
Hin1I GRCGYC 5 cut(s) 36, 125, 258, 267, 432
Hin1II CATG 1 cut(s) 439
Hin6I GCGC 1 cut(s) 125
HinP1I GCGC 1 cut(s) 125
HinfI GANTC 2 cut(s) 194, 627
HpaII CCGG 8 cut(s) 89, 116, 287, 299, 343, 355, 449, 483
Hpy166II GTNNAC 2 cut(s) 399, 415
Hpy188I TCNGA 3 cut(s) 58, 475, 632
Hpy188III TCNNGA 4 cut(s) 343, 421, 527, 533
Hpy8I GTNNAC 2 cut(s) 399, 415
Hpy99I CGWCG 5 cut(s) 38, 176, 185, 263, 269
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4IV ACGT 2 cut(s) 258, 401
HpyF10VI GCNNNNNNNGC 5 cut(s) 89, 299, 308, 346, 492
HpySE526I ACGT 2 cut(s) 258, 401
Hsp92I GRCGYC 5 cut(s) 36, 125, 258, 267, 432
Hsp92II CATG 1 cut(s) 439
HspAI GCGC 1 cut(s) 125
KasI GGCGCC 1 cut(s) 124
Kpn2I TCCGGA 1 cut(s) 342
KpnI GGTACC 1 cut(s) 355
KspI CCGCGG 1 cut(s) 229
Kzo9I GATC 4 cut(s) 58, 363, 523, 529
LmnI GCTCC 1 cut(s) 345
Lsp1109I GCAGC 1 cut(s) 118
LweI GCATC 1 cut(s) 372
MaeII ACGT 2 cut(s) 258, 401
MalI GATC 4 cut(s) 60, 365, 525, 531
MboI GATC 4 cut(s) 58, 363, 523, 529
MboII GAAGA 4 cut(s) 12, 396, 472, 583
MflI RGATCY 1 cut(s) 363
MluCI AATT 1 cut(s) 469
Mly113I GGCGCC 1 cut(s) 125
MlyI GAGTC 1 cut(s) 188
MroI TCCGGA 1 cut(s) 342
MspA1I CMGCKG 2 cut(s) 228, 370
MspI CCGG 8 cut(s) 89, 116, 287, 299, 343, 355, 449, 483
MspR9I CCNGG 4 cut(s) 89, 299, 394, 483
MvaI CCWGG 1 cut(s) 394
MvnI CGCG 2 cut(s) 204, 228
MwoI GCNNNNNNNGC 5 cut(s) 89, 299, 308, 346, 492
NarI GGCGCC 1 cut(s) 125
NciI CCSGG 3 cut(s) 89, 299, 483
NcoI CCATGG 1 cut(s) 435
NdeII GATC 4 cut(s) 58, 363, 523, 529
NlaIII CATG 1 cut(s) 439
NlaIV GGNNCC 5 cut(s) 93, 126, 167, 353, 413
NmeAIII GCCGAG 1 cut(s) 101
PcsI WCGNNNNNNNCGW 3 cut(s) 177, 189, 267
PfeI GAWTC 1 cut(s) 627
PflFI GACNNNGTC 1 cut(s) 269
PflMI CCANNNNNTGG 2 cut(s) 249, 331
PkrI GCNGC 9 cut(s) 66, 105, 108, 146, 227, 230, 292, 323, 454
PleI GAGTC 1 cut(s) 188
PluTI GGCGCC 1 cut(s) 128
PpsI GAGTC 1 cut(s) 188
PshAI GACNNNNGTC 1 cut(s) 311
Psp6I CCWGG 1 cut(s) 392
PspGI CCWGG 1 cut(s) 392
PspN4I GGNNCC 5 cut(s) 93, 126, 167, 353, 413
PspPI GGNCC 6 cut(s) 91, 165, 357, 372, 412, 446
PsuI RGATCY 1 cut(s) 363
PsyI GACNNNGTC 1 cut(s) 269
RsaI GTAC 3 cut(s) 215, 353, 590
RsaNI GTAC 3 cut(s) 214, 352, 589
Rsr2I CGGWCCG 1 cut(s) 357
RsrII CGGWCCG 1 cut(s) 357
SacII CCGCGG 1 cut(s) 229
SatI GCNGC 9 cut(s) 65, 104, 107, 145, 226, 229, 291, 322, 453
Sau3AI GATC 4 cut(s) 58, 363, 523, 529
Sau96I GGNCC 6 cut(s) 91, 165, 357, 372, 412, 446
SchI GAGTC 1 cut(s) 188
ScrFI CCNGG 4 cut(s) 89, 299, 394, 483
SetI ASST 8 cut(s) 111, 237, 261, 342, 398, 404, 448, 557
SfaNI GCATC 1 cut(s) 372
SfoI GGCGCC 1 cut(s) 126
Sfr303I CCGCGG 1 cut(s) 229
SgrBI CCGCGG 1 cut(s) 229
SinI GGWCC 4 cut(s) 165, 357, 412, 446
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
Sse9I AATT 1 cut(s) 469
SspDI GGCGCC 1 cut(s) 124
StyD4I CCNGG 4 cut(s) 87, 297, 392, 481
StyI CCWWGG 1 cut(s) 435
TaaI ACNGT 1 cut(s) 181
TaiI ACGT 2 cut(s) 261, 404
TaqI TCGA 3 cut(s) 192, 380, 563
TaqII GACCGA 1 cut(s) 374
TasI AATT 1 cut(s) 469
TatI WGTACW 1 cut(s) 588
TauI GCSGC 8 cut(s) 67, 106, 147, 228, 231, 293, 324, 455
TfiI GAWTC 1 cut(s) 627
TscAI CASTG 2 cut(s) 254, 323
TseI GCWGC 1 cut(s) 106
TspDTI ATGAA 1 cut(s) 584
TspRI CASTG 2 cut(s) 254, 323
Tth111I GACNNNGTC 1 cut(s) 269
Van91I CCANNNNNTGG 2 cut(s) 249, 331
VpaK11BI GGWCC 4 cut(s) 165, 357, 412, 446
XagI CCTNNNNNAGG 1 cut(s) 391
XapI RAATTY 1 cut(s) 469
ZraI GACGTC 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.