Rroxscaffold_4G00309130
MYB Family

Alcohol dehydrogenase transcription factor Myb/SANT-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0010006
Physical Location & Seq
Reverse (-)
30788308 .. 30790524
2217 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00309130.1

Sequence Viewer

Length: 1023 bp
ATGGACGACATGGCAGATGATGGTATCACACTATCACCGAAGCAAGGCCGTCCCCCTCGCCCTCCCGGCCCCTCCTCCGCCGCAGCTCACTCCGGCCTCGGCGCCTCCTCCCTCCTCCCGCCGCCTCCCCCTCCCTGCTGGTCCCACGACGAGACCGTCGCCCTCATCGACTCCTACCGCGACAAGTGGTACTCCCTCCGCCGCGGCAACCTCAAGGCCACGCACTGGCAGGACGTCGCCGACGCCGTCTCCCGCCGCTGTCCGGCCGCGTCACCGGCCAAGACCGCCGTCCAGTGCCGCCATAAGATGGAGAAGCTCCGGAAGCGGTACCGGACTGAGATCCAGCGGGCCAAGTCGATGCCCTTGTCCAGGTTCACGTCTTCCTGGGTCCACTTCAAGAGAATGGACGCCATGGAGAAAGGTCCGGCGGCTTTGAAGAACGAGAATTCGGACAGTCCCGGCGAGGACGGCGAGGATGAGGAGAACGATGAGGAGGACGATCAGGATCAGGAGTTGTATGAGGAGTTGAGGTATGGGTCGAATATGAAGAGCATGAGTAAGATGTATAGGAATGGAGTTGGGGTTGGGGTTGCGGGGAGTGGTGGGAGCAGTGTTGGTGGTGGGAGTGGTGGGTTTAGGATTAGGATTCCGACTGGGGTTAGTATAGCTCAGCCTGGGAACAAGGTTTATCCGAAGATGGATGCGAAATTCGGGTTGAATTCGCACCCGGGGTCGCATTCGGGGCCGAGTTATGCTACTGCTAAGAGGGAGAGGGAACGAGAGAGGGAGAGAGACCCTGTGGCGGAGATGGTGTCGGCGATTAAGGTTTTGGGAGATGGGTTTGTGAGGATGGAGCAGATGAAGATGGAGATGGCCAGGGAGATTGAGACTATGCGAATGGAGATGGAGATGAAGAGGACCGAGATGATTTTGGAGTCGCAGCAGAGGATTGTGGAGGCCTTTGCAAAGGCTGTATCGGAGAAGAAGAAGAAGGCTAAGAGAATGCCGTCGCCTGAGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

340

Amino Acids

37.76

Weight (kDa)

8.92

Isoelectric Point (pI)

58.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 45 - 138 9.3e-18 Myb/SANT-like DNA-binding domain
MADF_DNA_bdg PF10545 67 - 137 3.1e-09 Alcohol dehydrogenase transcription factor Myb/SANT-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 155
AatII GACGTC 1 cut(s) 237
Acc65I GGTACC 1 cut(s) 327
AccB1I GGYRCC 2 cut(s) 101, 327
AccB7I CCANNNNNTGG 2 cut(s) 225, 307
AccII CGCG 3 cut(s) 180, 204, 269
AccIII TCCGGA 1 cut(s) 318
AclWI GGATC 2 cut(s) 334, 513
AcoI YGGCCR 3 cut(s) 264, 276, 873
AcsI RAATTY 3 cut(s) 445, 707, 718
AcyI GRCGYC 4 cut(s) 102, 234, 243, 408
AfaI GTAC 2 cut(s) 191, 329
AfiI CCNNNNNNNGG 6 cut(s) 44, 225, 262, 307, 369, 802
AgsI TTSAA 3 cut(s) 397, 436, 718
AjiI CACGTC 1 cut(s) 378
AjnI CCWGG 4 cut(s) 368, 383, 673, 875
AluBI AGCT 3 cut(s) 86, 316, 668
AluI AGCT 3 cut(s) 86, 316, 668
Alw26I GTCTC 4 cut(s) 146, 253, 786, 881
AlwI GGATC 2 cut(s) 334, 513
Ama87I CYCGRG 1 cut(s) 727
Aor13HI TCCGGA 1 cut(s) 318
ApeKI GCWGC 2 cut(s) 83, 940
ApoI RAATTY 3 cut(s) 445, 707, 718
Asp718I GGTACC 1 cut(s) 327
AspLEI GCGC 1 cut(s) 104
AspS9I GGNCC 7 cut(s) 68, 141, 348, 388, 422, 743, 918
AsuC2I CCSGG 4 cut(s) 66, 459, 728, 729
AsuHPI GGTGA 2 cut(s) 27, 264
AvaI CYCGRG 1 cut(s) 727
AvaII GGWCC 4 cut(s) 141, 388, 422, 918
AxyI CCTNAGG 1 cut(s) 1014
BalI TGGCCA 1 cut(s) 875
BanI GGYRCC 2 cut(s) 101, 327
BbsI GAAGAC 1 cut(s) 372
BbvI GCAGC 2 cut(s) 95, 952
BccI CCATC 9 cut(s) 14, 301, 691, 802, 830, 844, 859, 865, 898
BceAI ACGGC 5 cut(s) 33, 230, 272, 484, 991
BciT130I CCWGG 4 cut(s) 370, 385, 675, 877
BcnI CCSGG 4 cut(s) 66, 459, 728, 729
BcoDI GTCTC 4 cut(s) 146, 253, 786, 881
BfoI RGCGCY 1 cut(s) 105
BglI GCCNNNNNGGC 1 cut(s) 66
BlpI GCTNAGC 1 cut(s) 669
Bme1390I CCNGG 8 cut(s) 66, 370, 385, 459, 675, 728, 729, 877
Bme18I GGWCC 4 cut(s) 141, 388, 422, 918
BmeT110I CYCGRG 1 cut(s) 727
BmgBI CACGTC 1 cut(s) 378
BmgT120I GGNCC 7 cut(s) 68, 141, 348, 388, 422, 743, 918
BmiI GGNNCC 6 cut(s) 70, 103, 143, 329, 389, 744
BmrFI CCNGG 8 cut(s) 66, 370, 385, 459, 675, 728, 729, 877
BmrI ACTGGG 1 cut(s) 663
BmsI GCATC 2 cut(s) 348, 691
BmuI ACTGGG 1 cut(s) 663
BoxI GACNNNNGTC 1 cut(s) 287
BpiI GAAGAC 1 cut(s) 372
Bpu1102I GCTNAGC 1 cut(s) 669
BpuEI CTTGAG 1 cut(s) 197
BpuMI CCSGG 4 cut(s) 66, 459, 728, 729
BsaBI GATNNNNATC 1 cut(s) 504
BsaHI GRCGYC 4 cut(s) 102, 234, 243, 408
BsaI GGTCTC 2 cut(s) 146, 786
BsaJI CCNNGG 8 cut(s) 97, 202, 384, 411, 674, 727, 728, 876
BsaWI WCCGGW 2 cut(s) 318, 330
BsaXI ACNNNNNCTCC 8 cut(s) 233, 263, 515, 545, 567, 597, 797, 827
Bsc4I CCNNNNNNNGG 6 cut(s) 44, 225, 262, 307, 369, 802
Bse118I RCCGGY 1 cut(s) 274
Bse1I ACTGG 3 cut(s) 230, 292, 658
Bse21I CCTNAGG 1 cut(s) 1014
Bse8I GATNNNNATC 1 cut(s) 504
BseAI TCCGGA 1 cut(s) 318
BseBI CCWGG 4 cut(s) 370, 385, 675, 877
BseDI CCNNGG 8 cut(s) 97, 202, 384, 411, 674, 727, 728, 876
BseGI GGATG 3 cut(s) 481, 706, 855
BseJI GATNNNNATC 1 cut(s) 504
BseLI CCNNNNNNNGG 6 cut(s) 44, 225, 262, 307, 369, 802
BseMII CTCAG 3 cut(s) 327, 683, 1005
BseNI ACTGG 3 cut(s) 230, 292, 658
BseRI GAGGAG 6 cut(s) 64, 97, 104, 494, 506, 536
BseX3I CGGCCG 1 cut(s) 264
BseXI GCAGC 2 cut(s) 95, 952
Bsh1236I CGCG 3 cut(s) 180, 204, 269
Bsh1285I CGRYCG 1 cut(s) 267
BshNI GGYRCC 2 cut(s) 101, 327
BsiEI CGRYCG 1 cut(s) 267
BsiHKCI CYCGRG 1 cut(s) 727
BsiSI CCGG 9 cut(s) 66, 93, 263, 275, 319, 331, 425, 459, 728
BslFI GGGAC 3 cut(s) 36, 127, 441
BslI CCNNNNNNNGG 6 cut(s) 44, 225, 262, 307, 369, 802
BsmAI GTCTC 4 cut(s) 146, 253, 786, 881
BsmBI CGTCTC 1 cut(s) 253
BsmFI GGGAC 3 cut(s) 36, 127, 441
BsmI GAATGC 2 cut(s) 736, 1008
Bso31I GGTCTC 2 cut(s) 146, 786
BsoBI CYCGRG 1 cut(s) 727
Bsp13I TCCGGA 1 cut(s) 318
Bsp143I GATC 3 cut(s) 339, 499, 505
Bsp1720I GCTNAGC 1 cut(s) 669
Bsp19I CCATGG 1 cut(s) 411
BspCNI CTCAG 3 cut(s) 328, 682, 1006
BspEI TCCGGA 1 cut(s) 318
BspFNI CGCG 3 cut(s) 180, 204, 269
BspLI GGNNCC 6 cut(s) 70, 103, 143, 329, 389, 744
BspPI GGATC 2 cut(s) 334, 513
BspQI GCTCTTC 1 cut(s) 542
BspT107I GGYRCC 2 cut(s) 101, 327
BspTNI GGTCTC 2 cut(s) 146, 786
BsrFI RCCGGY 1 cut(s) 274
BsrI ACTGG 3 cut(s) 230, 292, 658
BssAI RCCGGY 1 cut(s) 274
BssECI CCNNGG 8 cut(s) 97, 202, 384, 411, 674, 727, 728, 876
BssMI GATC 3 cut(s) 339, 499, 505
BssNI GRCGYC 4 cut(s) 102, 234, 243, 408
BssT1I CCWWGG 1 cut(s) 411
Bst2UI CCWGG 4 cut(s) 370, 385, 675, 877
Bst4CI ACNGT 2 cut(s) 157, 455
Bst6I CTCTTC 2 cut(s) 542, 908
BstACI GRCGYC 4 cut(s) 102, 234, 243, 408
BstC8I GCNNGC 1 cut(s) 348
BstDEI CTNAG 6 cut(s) 336, 669, 762, 996, 1014, 1020
BstDSI CCRYGG 2 cut(s) 202, 411
BstENI CCTNNNNNAGG 1 cut(s) 367
BstF5I GGATG 3 cut(s) 481, 706, 855
BstFNI CGCG 3 cut(s) 180, 204, 269
BstH2I RGCGCY 1 cut(s) 105
BstHHI GCGC 1 cut(s) 104
BstKTI GATC 3 cut(s) 342, 502, 508
BstMAI GTCTC 4 cut(s) 146, 253, 786, 881
BstMBI GATC 3 cut(s) 339, 499, 505
BstMCI CGRYCG 1 cut(s) 267
BstMWI GCNNNNNNNGC 6 cut(s) 66, 275, 284, 322, 468, 742
BstNI CCWGG 4 cut(s) 370, 385, 675, 877
BstPAI GACNNNNGTC 1 cut(s) 287
BstSCI CCNGG 8 cut(s) 64, 368, 383, 457, 673, 726, 727, 875
BstUI CGCG 3 cut(s) 180, 204, 269
BstV1I GCAGC 2 cut(s) 95, 952
BstV2I GAAGAC 1 cut(s) 372
BstX2I RGATCY 1 cut(s) 339
BstYI RGATCY 1 cut(s) 339
BstZI CGGCCG 1 cut(s) 264
Bsu36I CCTNAGG 1 cut(s) 1014
BtgI CCRYGG 2 cut(s) 202, 411
BtrI CACGTC 1 cut(s) 378
BtsCI GGATG 3 cut(s) 481, 706, 855
BtsI GCAGTG 1 cut(s) 616
BtsIMutI CAGTG 3 cut(s) 223, 299, 616
Cac8I GCNNGC 1 cut(s) 348
CfoI GCGC 1 cut(s) 104
Cfr10I RCCGGY 1 cut(s) 274
Cfr13I GGNCC 7 cut(s) 68, 141, 348, 388, 422, 743, 918
Cfr42I CCGCGG 1 cut(s) 205
Cfr9I CCCGGG 1 cut(s) 727
CseI GACGC 3 cut(s) 251, 258, 416
Csp6I GTAC 2 cut(s) 190, 328
CviAII CATG 3 cut(s) 10, 412, 553
CviQI GTAC 2 cut(s) 190, 328
DdeI CTNAG 6 cut(s) 336, 669, 762, 996, 1014, 1020
DinI GGCGCC 1 cut(s) 103
DpnI GATC 3 cut(s) 341, 501, 507
DpnII GATC 3 cut(s) 339, 499, 505
DrdI GACNNNNNNGTC 1 cut(s) 155
DseDI GACNNNNNNGTC 1 cut(s) 155
EaeI YGGCCR 3 cut(s) 264, 276, 873
EagI CGGCCG 1 cut(s) 264
Eam1104I CTCTTC 2 cut(s) 542, 908
EarI CTCTTC 2 cut(s) 542, 908
EciI GGCGGA 3 cut(s) 67, 188, 818
EclXI CGGCCG 1 cut(s) 264
Eco130I CCWWGG 1 cut(s) 411
Eco147I AGGCCT 1 cut(s) 959
Eco31I GGTCTC 2 cut(s) 146, 786
Eco47I GGWCC 4 cut(s) 141, 388, 422, 918
Eco52I CGGCCG 1 cut(s) 264
Eco81I CCTNAGG 1 cut(s) 1014
Eco88I CYCGRG 1 cut(s) 727
EcoNI CCTNNNNNAGG 1 cut(s) 367
EcoRI GAATTC 2 cut(s) 445, 718
EcoRII CCWGG 4 cut(s) 368, 383, 673, 875
EcoT14I CCWWGG 1 cut(s) 411
EgeI GGCGCC 1 cut(s) 103
EheI GGCGCC 1 cut(s) 103
ErhI CCWWGG 1 cut(s) 411
Esp3I CGTCTC 1 cut(s) 253
FaeI CATG 3 cut(s) 13, 415, 556
FaqI GGGAC 3 cut(s) 36, 127, 441
FatI CATG 3 cut(s) 9, 411, 552
FauI CCCGC 4 cut(s) 126, 260, 339, 586
FokI GGATG 3 cut(s) 488, 713, 862
GlaI GCGC 1 cut(s) 103
HaeII RGCGCY 1 cut(s) 105
HapII CCGG 9 cut(s) 66, 93, 263, 275, 319, 331, 425, 459, 728
HgaI GACGC 3 cut(s) 251, 258, 416
HhaI GCGC 1 cut(s) 104
Hin1I GRCGYC 4 cut(s) 102, 234, 243, 408
Hin1II CATG 3 cut(s) 13, 415, 556
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HinfI GANTC 3 cut(s) 170, 646, 935
HpaII CCGG 9 cut(s) 66, 93, 263, 275, 319, 331, 425, 459, 728
HphI GGTGA 2 cut(s) 27, 264
Hpy166II GTNNAC 2 cut(s) 375, 391
Hpy188I TCNGA 4 cut(s) 451, 651, 693, 979
Hpy188III TCNNGA 4 cut(s) 319, 397, 503, 509
Hpy8I GTNNAC 2 cut(s) 375, 391
Hpy99I CGWCG 5 cut(s) 152, 161, 239, 245, 1012
HpyAV CCTTC 1 cut(s) 985
HpyCH4III ACNGT 2 cut(s) 157, 455
HpyCH4IV ACGT 2 cut(s) 234, 377
HpyCH4V TGCA 1 cut(s) 965
HpyF10VI GCNNNNNNNGC 6 cut(s) 66, 275, 284, 322, 468, 742
HpyF3I CTNAG 6 cut(s) 336, 669, 762, 996, 1014, 1020
HpySE526I ACGT 2 cut(s) 234, 377
Hsp92I GRCGYC 4 cut(s) 102, 234, 243, 408
Hsp92II CATG 3 cut(s) 13, 415, 556
HspAI GCGC 1 cut(s) 102
KasI GGCGCC 1 cut(s) 101
Kpn2I TCCGGA 1 cut(s) 318
KpnI GGTACC 1 cut(s) 331
KspI CCGCGG 1 cut(s) 205
Kzo9I GATC 3 cut(s) 339, 499, 505
LguI GCTCTTC 1 cut(s) 542
LmnI GCTCC 3 cut(s) 321, 606, 853
Lsp1109I GCAGC 2 cut(s) 95, 952
LweI GCATC 2 cut(s) 348, 691
MaeII ACGT 2 cut(s) 234, 377
MaeIII GTNAC 1 cut(s) 270
MalI GATC 3 cut(s) 341, 501, 507
MboI GATC 3 cut(s) 339, 499, 505
MboII GAAGA 9 cut(s) 372, 448, 559, 706, 874, 925, 994, 997, 1000
MflI RGATCY 1 cut(s) 339
MlsI TGGCCA 1 cut(s) 875
MluCI AATT 3 cut(s) 445, 707, 718
MluNI TGGCCA 1 cut(s) 875
Mly113I GGCGCC 1 cut(s) 102
MlyI GAGTC 2 cut(s) 164, 944
MmeI TCCRAC 1 cut(s) 674
Mox20I TGGCCA 1 cut(s) 875
MroI TCCGGA 1 cut(s) 318
MscI TGGCCA 1 cut(s) 875
MseI TTAA 1 cut(s) 822
Msp20I TGGCCA 1 cut(s) 875
MspA1I CMGCKG 3 cut(s) 204, 258, 346
MspI CCGG 9 cut(s) 66, 93, 263, 275, 319, 331, 425, 459, 728
MspR9I CCNGG 8 cut(s) 66, 370, 385, 459, 675, 728, 729, 877
Mva1269I GAATGC 2 cut(s) 736, 1008
MvaI CCWGG 4 cut(s) 370, 385, 675, 877
MvnI CGCG 3 cut(s) 180, 204, 269
MwoI GCNNNNNNNGC 6 cut(s) 66, 275, 284, 322, 468, 742
NarI GGCGCC 1 cut(s) 102
NciI CCSGG 4 cut(s) 66, 459, 728, 729
NcoI CCATGG 1 cut(s) 411
NdeII GATC 3 cut(s) 339, 499, 505
NlaIII CATG 3 cut(s) 13, 415, 556
NlaIV GGNNCC 6 cut(s) 70, 103, 143, 329, 389, 744
NmeAIII GCCGAG 2 cut(s) 78, 771
NmuCI GTSAC 1 cut(s) 270
PceI AGGCCT 1 cut(s) 959
PciSI GCTCTTC 1 cut(s) 542
PcsI WCGNNNNNNNCGW 3 cut(s) 153, 165, 243
PctI GAATGC 2 cut(s) 736, 1008
PfeI GAWTC 1 cut(s) 646
PflFI GACNNNGTC 1 cut(s) 245
PflMI CCANNNNNTGG 2 cut(s) 225, 307
PleI GAGTC 2 cut(s) 164, 943
PluTI GGCGCC 1 cut(s) 105
PpsI GAGTC 2 cut(s) 164, 943
PshAI GACNNNNGTC 1 cut(s) 287
Psp6I CCWGG 4 cut(s) 368, 383, 673, 875
PspGI CCWGG 4 cut(s) 368, 383, 673, 875
PspN4I GGNNCC 6 cut(s) 70, 103, 143, 329, 389, 744
PspPI GGNCC 7 cut(s) 68, 141, 348, 388, 422, 743, 918
PsuI RGATCY 1 cut(s) 339
PsyI GACNNNGTC 1 cut(s) 245
RsaI GTAC 2 cut(s) 191, 329
RsaNI GTAC 2 cut(s) 190, 328
SacII CCGCGG 1 cut(s) 205
SapI GCTCTTC 1 cut(s) 542
SaqAI TTAA 1 cut(s) 822
Sau3AI GATC 3 cut(s) 339, 499, 505
Sau96I GGNCC 7 cut(s) 68, 141, 348, 388, 422, 743, 918
SchI GAGTC 2 cut(s) 164, 944
ScrFI CCNGG 8 cut(s) 66, 370, 385, 459, 675, 728, 729, 877
SfaNI GCATC 2 cut(s) 348, 691
SfoI GGCGCC 1 cut(s) 103
Sfr303I CCGCGG 1 cut(s) 205
SgrBI CCGCGG 1 cut(s) 205
SinI GGWCC 4 cut(s) 141, 388, 422, 918
SmaI CCCGGG 1 cut(s) 729
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
Sse9I AATT 3 cut(s) 445, 707, 718
SseBI AGGCCT 1 cut(s) 959
SspDI GGCGCC 1 cut(s) 101
StuI AGGCCT 1 cut(s) 959
StyD4I CCNGG 8 cut(s) 64, 368, 383, 457, 673, 726, 727, 875
StyI CCWWGG 1 cut(s) 411
TaaI ACNGT 2 cut(s) 157, 455
TaiI ACGT 2 cut(s) 237, 380
TaqI TCGA 3 cut(s) 168, 356, 539
TaqII GACCGA 1 cut(s) 935
TasI AATT 3 cut(s) 445, 707, 718
TauI GCSGC 8 cut(s) 83, 124, 204, 207, 258, 269, 300, 431
TfiI GAWTC 1 cut(s) 646
Tru1I TTAA 1 cut(s) 822
Tru9I TTAA 1 cut(s) 822
TscAI CASTG 3 cut(s) 230, 299, 616
TseFI GTSAC 1 cut(s) 270
TseI GCWGC 2 cut(s) 83, 940
Tsp45I GTSAC 1 cut(s) 270
TspDTI ATGAA 3 cut(s) 560, 875, 926
TspMI CCCGGG 1 cut(s) 727
TspRI CASTG 3 cut(s) 230, 299, 616
Tth111I GACNNNGTC 1 cut(s) 245
Van91I CCANNNNNTGG 2 cut(s) 225, 307
VpaK11BI GGWCC 4 cut(s) 141, 388, 422, 918
XagI CCTNNNNNAGG 1 cut(s) 367
XapI RAATTY 3 cut(s) 445, 707, 718
XmaI CCCGGG 1 cut(s) 727
ZraI GACGTC 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.