Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0010006

Physical Location & Seq

Genomic Coordinates Forward (+)

8963716 .. 8967336

Gene Structure 3621 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g09240.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGCCTCCTCTCCTCCCTCCTCTCCCCACGACGGCTCTCCTCTCCTCCTCTCCGACCCCCCTCACGCCGTCCCCCTCGCCCTCCCCGCCCCTCCCTCCTCCTCCTCCGCCCCGCCGCCGCCCTCCACCTCCCGCCGCCTCCCCCCGCCGTGCTGGTCCCACGACGAGACCGTCGCCCTCATCGACTCCTACCGCGACAAGTGGTACTCCCTCCGCCGCGGCAACCTCAAGGCCACGCACTGGCAGGACGTCGCCGACGCCGTCTCCCGCCGCTGCCCCGCCGCCTCCCCCGCCAAGACCGCCGTCCAGTGCCGCCACAAGATGGAGAAGCTCCGCAAGCGCTACCGCACCGAGATCCAGCGCGCTAGGTCCATGCCCTTGGCCAGATTCACCTCCTCCTGGGTCCACTTCAAGCGCATGGACGCCATGGAGAAAGGCCCGGCGGCGATGAAGAACGAGAACTCGGATAGTCCCGTTGACGACGGCGAGGATGAGGAGAACGATGAGGAGGAGGATCAGGACCAGGAGCTGTATGAGGAGCTGAGATACGGTTCGAATATGAAGAGTATGAGTAAGATGTATAGGAATGGAGTTGGGATTGGTGGGAGTGGTGGAGGGAGCAGTGTTGGTGGTGGGAATGGTGGGTTTCGGATTCGGATTCCGACTGGGGTTAGTATAGCTCAGCCTGGGAATAAGGTTTATCCGAAGATGGATCAGAAGTTTGGGATGAATTCGCACCCGGGGACGAGCTATGCTACTGCTAAGGTGATGAGGGAGTGCAATAATAATGTAGGGGGGAGAGGTGGTGGGGGGTTGGGGAAGAGGGAGAGGGAGAGGGACCCTGTGGCAGAGATGGTGTCGGCGATTAAGGTGTTGGGAGATGGGTTTGTGAGGACGGAGCAGACGAAGATTGAGATGGCCAGGGAGATTGAGACTATGCGGATGGAGATGGAGATGAAGAGGACCGAGATGATATTGGAGTCACAGCAGCGGATTGTGGATGCTTTTGCAAAGGCTGTTTCGGAGAAGAAGAAGAAGAAGGCCAAGAGAATGCCGTCTCCTGAGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

357

Amino Acids

39.34

Weight (kDa)

9.27

Isoelectric Point (pI)

68.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_4	PF13837	50 - 143	1.4e-17	Myb/SANT-like DNA-binding domain
MADF_DNA_bdg	PF10545	72 - 142	4.9e-09	Alcohol dehydrogenase transcription factor Myb/SANT-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44730
fragaria_vesca	FvH4_7g09240 FvH4_7g09240
malus_domestica	MD02G1219900.v1.1 MD07G1097000.v1.1 MD07G1097300.v1.1
prunus_persica	Prupe.2G121200_v2.0.a1 Prupe.2G121200_v2.0.a1
pyrus_communis	pycom02g18070 pycom07g08010
rosa_chinensis	RchiOBHm_Chr1g0345291
rosa_laevigata	RLG00000028841
rosa_multiflora	Rmu_sc0002329.1_g000011 Rmu_sc0031510.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309130
rosa_rugosa	Rorug01G0177200
rosa_samantha	Rh1AG195300 Rh1BG161400 Rh1CG179700 Rh1DG191800
rosa_wichuraiana	Rw1G016090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	170
AatII	GACGTC	1 cut(s)	252
AccB7I	CCANNNNNTGG	2 cut(s)	240, 322
AccII	CGCG	3 cut(s)	195, 219, 363
AclWI	GGATC	3 cut(s)	349, 522, 720
AcoI	YGGCCR	2 cut(s)	381, 918
AcsI	RAATTY	1 cut(s)	730
AcyI	GRCGYC	3 cut(s)	249, 258, 423
AfaI	GTAC	1 cut(s)	206
AfeI	AGCGCT	1 cut(s)	341
AfiI	CCNNNNNNNGG	4 cut(s)	32, 240, 322, 399
AgsI	TTSAA	1 cut(s)	412
AjnI	CCWGG	4 cut(s)	398, 522, 685, 920
AluBI	AGCT	5 cut(s)	331, 529, 541, 680, 750
AluI	AGCT	5 cut(s)	331, 529, 541, 680, 750
Alw26I	GTCTC	4 cut(s)	161, 268, 926, 1062
AlwI	GGATC	3 cut(s)	349, 522, 720
AlwNI	CAGNNNCTG	1 cut(s)	529
Ama87I	CYCGRG	1 cut(s)	739
Aor51HI	AGCGCT	1 cut(s)	341
AoxI	GGCC	6 cut(s)	3, 231, 381, 436, 918, 1041
ApeKI	GCWGC	2 cut(s)	273, 988
ApoI	RAATTY	1 cut(s)	730
AspLEI	GCGC	4 cut(s)	342, 363, 365, 417
AspS9I	GGNCC	7 cut(s)	156, 369, 403, 437, 520, 838, 963
AsuC2I	CCSGG	3 cut(s)	440, 740, 741
AsuHPI	GGTGA	2 cut(s)	382, 778
AsuII	TTCGAA	1 cut(s)	554
AvaI	CYCGRG	1 cut(s)	739
AvaII	GGWCC	6 cut(s)	156, 369, 403, 520, 838, 963
AxyI	CCTNAGG	1 cut(s)	1062
BalI	TGGCCA	2 cut(s)	383, 920
BbvI	GCAGC	2 cut(s)	260, 1000
BccI	CCATC	7 cut(s)	316, 703, 847, 875, 910, 937, 943
BceAI	ACGGC	7 cut(s)	49, 53, 133, 245, 287, 499, 1039
BciT130I	CCWGG	4 cut(s)	400, 524, 687, 922
BcnI	CCSGG	3 cut(s)	440, 740, 741
BcoDI	GTCTC	4 cut(s)	161, 268, 926, 1062
BfaI	CTAG	1 cut(s)	366
BfoI	RGCGCY	1 cut(s)	343
BlpI	GCTNAGC	1 cut(s)	681
Bme1390I	CCNGG	7 cut(s)	400, 440, 524, 687, 740, 741, 922
Bme18I	GGWCC	6 cut(s)	156, 369, 403, 520, 838, 963
BmeT110I	CYCGRG	1 cut(s)	739
BmgT120I	GGNCC	7 cut(s)	156, 369, 403, 437, 520, 838, 963
BmiI	GGNNCC	4 cut(s)	158, 404, 839, 840
BmrFI	CCNGG	7 cut(s)	400, 440, 524, 687, 740, 741, 922
BmrI	ACTGGG	1 cut(s)	675
BmsI	GCATC	1 cut(s)	991
BmuI	ACTGGG	1 cut(s)	675
BoxI	GACNNNNGTC	1 cut(s)	302
Bpu10I	CCTNAGC	1 cut(s)	762
Bpu1102I	GCTNAGC	1 cut(s)	681
Bpu14I	TTCGAA	1 cut(s)	554
BpuEI	CTTGAG	1 cut(s)	212
BpuMI	CCSGG	3 cut(s)	440, 740, 741
BsaHI	GRCGYC	3 cut(s)	249, 258, 423
BsaI	GGTCTC	1 cut(s)	161
BsaJI	CCNNGG	8 cut(s)	217, 378, 399, 426, 686, 739, 740, 921
BsaXI	ACNNNNNCTCC	4 cut(s)	248, 278, 790, 820
Bsc4I	CCNNNNNNNGG	4 cut(s)	32, 240, 322, 399
Bse1I	ACTGG	3 cut(s)	245, 307, 670
Bse21I	CCTNAGG	1 cut(s)	1062
BseBI	CCWGG	4 cut(s)	400, 524, 687, 922
BseDI	CCNNGG	8 cut(s)	217, 378, 399, 426, 686, 739, 740, 921
BseGI	GGATG	4 cut(s)	496, 732, 948, 1006
BseLI	CCNNNNNNNGG	4 cut(s)	32, 240, 322, 399
BseMII	CTCAG	3 cut(s)	533, 695, 1053
BseNI	ACTGG	3 cut(s)	245, 307, 670
BsePI	GCGCGC	1 cut(s)	361
BseXI	GCAGC	2 cut(s)	260, 1000
Bsh1236I	CGCG	3 cut(s)	195, 219, 363
BshFI	GGCC	6 cut(s)	5, 233, 383, 438, 920, 1043
BsiHKCI	CYCGRG	1 cut(s)	739
BsiSI	CCGG	2 cut(s)	440, 740
BslFI	GGGAC	5 cut(s)	56, 142, 456, 757, 851
BslI	CCNNNNNNNGG	4 cut(s)	32, 240, 322, 399
BsmAI	GTCTC	4 cut(s)	161, 268, 926, 1062
BsmBI	CGTCTC	2 cut(s)	268, 1062
BsmFI	GGGAC	5 cut(s)	56, 142, 456, 757, 851
BsmI	GAATGC	1 cut(s)	1056
BsnI	GGCC	6 cut(s)	5, 233, 383, 438, 920, 1043
Bso31I	GGTCTC	1 cut(s)	161
BsoBI	CYCGRG	1 cut(s)	739
Bsp119I	TTCGAA	1 cut(s)	554
Bsp143I	GATC	3 cut(s)	354, 514, 712
Bsp1720I	GCTNAGC	1 cut(s)	681
Bsp19I	CCATGG	1 cut(s)	426
BspANI	GGCC	6 cut(s)	5, 233, 383, 438, 920, 1043
BspCNI	CTCAG	3 cut(s)	534, 694, 1054
BspFNI	CGCG	3 cut(s)	195, 219, 363
BspLI	GGNNCC	4 cut(s)	158, 404, 839, 840
BspPI	GGATC	3 cut(s)	349, 522, 720
BspT104I	TTCGAA	1 cut(s)	554
BspTNI	GGTCTC	1 cut(s)	161
BsrI	ACTGG	3 cut(s)	245, 307, 670
BssECI	CCNNGG	8 cut(s)	217, 378, 399, 426, 686, 739, 740, 921
BssHII	GCGCGC	1 cut(s)	361
BssMI	GATC	3 cut(s)	354, 514, 712
BssNI	GRCGYC	3 cut(s)	249, 258, 423
BssT1I	CCWWGG	2 cut(s)	378, 426
Bst2UI	CCWGG	4 cut(s)	400, 524, 687, 922
Bst4CI	ACNGT	2 cut(s)	172, 551
Bst6I	CTCTTC	3 cut(s)	557, 815, 953
BstACI	GRCGYC	3 cut(s)	249, 258, 423
BstBI	TTCGAA	1 cut(s)	554
BstC8I	GCNNGC	2 cut(s)	338, 363
BstDEI	CTNAG	4 cut(s)	542, 681, 762, 1062
BstDSI	CCRYGG	2 cut(s)	217, 426
BstF5I	GGATG	4 cut(s)	496, 732, 948, 1006
BstFNI	CGCG	3 cut(s)	195, 219, 363
BstH2I	RGCGCY	1 cut(s)	343
BstHHI	GCGC	4 cut(s)	342, 363, 365, 417
BstKTI	GATC	3 cut(s)	357, 517, 715
BstMAI	GTCTC	4 cut(s)	161, 268, 926, 1062
BstMBI	GATC	3 cut(s)	354, 514, 712
BstMWI	GCNNNNNNNGC	4 cut(s)	86, 290, 299, 337
BstNI	CCWGG	4 cut(s)	400, 524, 687, 922
BstPAI	GACNNNNGTC	1 cut(s)	302
BstSCI	CCNGG	7 cut(s)	398, 438, 522, 685, 738, 739, 920
BstUI	CGCG	3 cut(s)	195, 219, 363
BstV1I	GCAGC	2 cut(s)	260, 1000
BstX2I	RGATCY	1 cut(s)	354
BstXI	CCANNNNNNTGG	1 cut(s)	379
BstYI	RGATCY	1 cut(s)	354
Bsu36I	CCTNAGG	1 cut(s)	1062
BsuRI	GGCC	6 cut(s)	5, 233, 383, 438, 920, 1043
BtgI	CCRYGG	2 cut(s)	217, 426
BtgZI	GCGATG	1 cut(s)	461
BtsCI	GGATG	4 cut(s)	496, 732, 948, 1006
BtsI	GCAGTG	1 cut(s)	628
BtsIMutI	CAGTG	3 cut(s)	238, 314, 628
Cac8I	GCNNGC	2 cut(s)	338, 363
CaiI	CAGNNNCTG	1 cut(s)	529
CfoI	GCGC	4 cut(s)	342, 363, 365, 417
Cfr13I	GGNCC	7 cut(s)	156, 369, 403, 437, 520, 838, 963
Cfr42I	CCGCGG	1 cut(s)	220
Cfr9I	CCCGGG	1 cut(s)	739
CseI	GACGC	2 cut(s)	266, 431
Csp6I	GTAC	1 cut(s)	205
CviAII	CATG	3 cut(s)	373, 418, 427
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	4 cut(s)	542, 681, 762, 1062
DpnI	GATC	3 cut(s)	356, 516, 714
DpnII	GATC	3 cut(s)	354, 514, 712
DrdI	GACNNNNNNGTC	1 cut(s)	170
DseDI	GACNNNNNNGTC	1 cut(s)	170
EaeI	YGGCCR	2 cut(s)	381, 918
Eam1104I	CTCTTC	3 cut(s)	557, 815, 953
EarI	CTCTTC	3 cut(s)	557, 815, 953
EciI	GGCGGA	2 cut(s)	97, 203
Eco130I	CCWWGG	2 cut(s)	378, 426
Eco31I	GGTCTC	1 cut(s)	161
Eco47I	GGWCC	6 cut(s)	156, 369, 403, 520, 838, 963
Eco47III	AGCGCT	1 cut(s)	341
Eco81I	CCTNAGG	1 cut(s)	1062
Eco88I	CYCGRG	1 cut(s)	739
EcoO109I	RGGNCCY	1 cut(s)	838
EcoRI	GAATTC	1 cut(s)	730
EcoRII	CCWGG	4 cut(s)	398, 522, 685, 920
EcoT14I	CCWWGG	2 cut(s)	378, 426
ErhI	CCWWGG	2 cut(s)	378, 426
Esp3I	CGTCTC	2 cut(s)	268, 1062
FaeI	CATG	3 cut(s)	376, 421, 430
FaqI	GGGAC	5 cut(s)	56, 142, 456, 757, 851
FatI	CATG	3 cut(s)	372, 417, 426
FauI	CCCGC	7 cut(s)	94, 120, 140, 153, 275, 286, 298
FokI	GGATG	4 cut(s)	503, 739, 955, 1013
FspBI	CTAG	1 cut(s)	366
GlaI	GCGC	4 cut(s)	341, 362, 364, 416
HaeII	RGCGCY	1 cut(s)	343
HaeIII	GGCC	6 cut(s)	5, 233, 383, 438, 920, 1043
HapII	CCGG	2 cut(s)	440, 740
HgaI	GACGC	2 cut(s)	266, 431
HhaI	GCGC	4 cut(s)	342, 363, 365, 417
Hin1I	GRCGYC	3 cut(s)	249, 258, 423
Hin1II	CATG	3 cut(s)	376, 421, 430
Hin6I	GCGC	4 cut(s)	340, 361, 363, 415
HinP1I	GCGC	4 cut(s)	340, 361, 363, 415
HincII	GTYRAC	1 cut(s)	478
HindII	GTYRAC	1 cut(s)	478
HinfI	GANTC	5 cut(s)	185, 387, 652, 658, 980
HpaII	CCGG	2 cut(s)	440, 740
HphI	GGTGA	2 cut(s)	382, 778
Hpy166II	GTNNAC	2 cut(s)	406, 478
Hpy188I	TCNGA	8 cut(s)	55, 466, 651, 657, 663, 705, 717, 1024
Hpy188III	TCNNGA	2 cut(s)	518, 1061
Hpy8I	GTNNAC	2 cut(s)	406, 478
Hpy99I	CGWCG	6 cut(s)	35, 167, 176, 254, 260, 485
HpyAV	CCTTC	1 cut(s)	1033
HpyCH4III	ACNGT	2 cut(s)	172, 551
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	2 cut(s)	780, 1010
HpyF10VI	GCNNNNNNNGC	4 cut(s)	86, 290, 299, 337
HpyF3I	CTNAG	4 cut(s)	542, 681, 762, 1062
HpySE526I	ACGT	1 cut(s)	249
Hsp92I	GRCGYC	3 cut(s)	249, 258, 423
Hsp92II	CATG	3 cut(s)	376, 421, 430
HspAI	GCGC	4 cut(s)	340, 361, 363, 415
KflI	GGGWCCC	1 cut(s)	838
KspI	CCGCGG	1 cut(s)	220
Kzo9I	GATC	3 cut(s)	354, 514, 712
LmnI	GCTCC	5 cut(s)	336, 526, 538, 618, 898
Lsp1109I	GCAGC	2 cut(s)	260, 1000
LweI	GCATC	1 cut(s)	991
MaeI	CTAG	1 cut(s)	366
MaeII	ACGT	1 cut(s)	249
MaeIII	GTNAC	1 cut(s)	981
MalI	GATC	3 cut(s)	356, 516, 714
MboI	GATC	3 cut(s)	354, 514, 712
MflI	RGATCY	1 cut(s)	354
MlsI	TGGCCA	2 cut(s)	383, 920
MluCI	AATT	1 cut(s)	730
MluNI	TGGCCA	2 cut(s)	383, 920
MlyI	GAGTC	2 cut(s)	179, 989
MmeI	TCCRAC	2 cut(s)	78, 686
Mox20I	TGGCCA	2 cut(s)	383, 920
MscI	TGGCCA	2 cut(s)	383, 920
MseI	TTAA	1 cut(s)	867
Msp20I	TGGCCA	2 cut(s)	383, 920
MspA1I	CMGCKG	3 cut(s)	219, 273, 991
MspI	CCGG	2 cut(s)	440, 740
MspR9I	CCNGG	7 cut(s)	400, 440, 524, 687, 740, 741, 922
Mva1269I	GAATGC	1 cut(s)	1056
MvaI	CCWGG	4 cut(s)	400, 524, 687, 922
MvnI	CGCG	3 cut(s)	195, 219, 363
MwoI	GCNNNNNNNGC	4 cut(s)	86, 290, 299, 337
NciI	CCSGG	3 cut(s)	440, 740, 741
NcoI	CCATGG	1 cut(s)	426
NdeII	GATC	3 cut(s)	354, 514, 712
NlaIII	CATG	3 cut(s)	376, 421, 430
NlaIV	GGNNCC	4 cut(s)	158, 404, 839, 840
NmuCI	GTSAC	1 cut(s)	981
NspV	TTCGAA	1 cut(s)	554
PauI	GCGCGC	1 cut(s)	361
PcsI	WCGNNNNNNNCGW	4 cut(s)	168, 180, 258, 902
PctI	GAATGC	1 cut(s)	1056
PfeI	GAWTC	3 cut(s)	387, 652, 658
PflFI	GACNNNGTC	1 cut(s)	260
PflMI	CCANNNNNTGG	2 cut(s)	240, 322
PleI	GAGTC	2 cut(s)	179, 988
PpsI	GAGTC	2 cut(s)	179, 988
PpuMI	RGGWCCY	1 cut(s)	838
PshAI	GACNNNNGTC	1 cut(s)	302
Psp5II	RGGWCCY	1 cut(s)	838
Psp6I	CCWGG	4 cut(s)	398, 522, 685, 920
PspGI	CCWGG	4 cut(s)	398, 522, 685, 920
PspN4I	GGNNCC	4 cut(s)	158, 404, 839, 840
PspPI	GGNCC	7 cut(s)	156, 369, 403, 437, 520, 838, 963
PspPPI	RGGWCCY	1 cut(s)	838
PstNI	CAGNNNCTG	1 cut(s)	529
PsuI	RGATCY	1 cut(s)	354
PsyI	GACNNNGTC	1 cut(s)	260
PteI	GCGCGC	1 cut(s)	361
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
SacII	CCGCGG	1 cut(s)	220
SaqAI	TTAA	1 cut(s)	867
Sau3AI	GATC	3 cut(s)	354, 514, 712
Sau96I	GGNCC	7 cut(s)	156, 369, 403, 437, 520, 838, 963
SchI	GAGTC	2 cut(s)	179, 989
ScrFI	CCNGG	7 cut(s)	400, 440, 524, 687, 740, 741, 922
SfaNI	GCATC	1 cut(s)	991
Sfr303I	CCGCGG	1 cut(s)	220
SfuI	TTCGAA	1 cut(s)	554
SgrBI	CCGCGG	1 cut(s)	220
SinI	GGWCC	6 cut(s)	156, 369, 403, 520, 838, 963
SmaI	CCCGGG	1 cut(s)	741
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse9I	AATT	1 cut(s)	730
SspMI	CTAG	1 cut(s)	366
StyD4I	CCNGG	7 cut(s)	398, 438, 522, 685, 738, 739, 920
StyI	CCWWGG	2 cut(s)	378, 426
TaaI	ACNGT	2 cut(s)	172, 551
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	2 cut(s)	183, 554
TaqII	GACCGA	1 cut(s)	980
TasI	AATT	1 cut(s)	730
TauI	GCSGC	9 cut(s)	118, 121, 138, 219, 222, 273, 284, 315, 446
TfiI	GAWTC	3 cut(s)	387, 652, 658
Tru1I	TTAA	1 cut(s)	867
Tru9I	TTAA	1 cut(s)	867
TscAI	CASTG	3 cut(s)	245, 314, 628
TseFI	GTSAC	1 cut(s)	981
TseI	GCWGC	2 cut(s)	273, 988
Tsp45I	GTSAC	1 cut(s)	981
TspDTI	ATGAA	4 cut(s)	464, 575, 743, 971
TspGWI	ACGGA	1 cut(s)	911
TspMI	CCCGGG	1 cut(s)	739
TspRI	CASTG	3 cut(s)	245, 314, 628
Tth111I	GACNNNGTC	1 cut(s)	260
Van91I	CCANNNNNTGG	2 cut(s)	240, 322
VpaK11BI	GGWCC	6 cut(s)	156, 369, 403, 520, 838, 963
XapI	RAATTY	1 cut(s)	730
XmaI	CCCGGG	1 cut(s)	739
XspI	CTAG	1 cut(s)	366
ZraI	GACGTC	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.