Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0010006

Physical Location & Seq

Genomic Coordinates Reverse (-)

10661222 .. 10661974

Gene Structure 753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1097000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGAGAAGCTCCGGAAGCGGTACCGGACTGAGATCCAGCGAGCCAGGTCGATGCCGTTGTCCAGATTCACGTCGTCGTGGGTCCACTTCAAGCGGATGGACGCCATGGAGAAGGGGCCGGCAGCTGGGAAGAGGGAAAACTCCGAAAGTCCCGGCGAAGAGGAGGAGAACGAGGAGAACGAAGAGGAGGAGGATCCGGATCAGGAGCTCTATGAGGAGCTGAGGTACGGGTCGAATATGAAGAGTATGAGTAAGTTGTATAGGAATGGAGTTGGGGTTGGTGGCGGAAGTGGCGGAAGTGGTGGCGGTGCTGGTGCCGGAAGTGGGTTTAGGATTAGGATTCCAACTGGGGTTAGTATAGCTCAGCCTGGGACCAAGGTGTATCCGAAGATGGATCAGAAATTCGGGATGAATTCGAATCCAGCGTCGGTTTATGGGAGTGCTAAGGTGATGAGAGAGTGTGGGAATTCGGGGAGGCCCGGATTGGGGAAGAGAGAAGGGAATGGGAGGGAGAGGGAGAGAGACCCCGTGGCGGAGATGGTGTCGGCGATTAAGCTTTTGGGAGATGGGTTTGTGAGGATGGAGCAGATGAAGATGGAGATGGCGAGGGAGGTCGAGGCGATGCGGATGGAGATGGAAATGAAGCGGACGGAAATGATTTTGGACTCTCAGCAAAGAATTGTGGAGGCTTTTGCGAAGGCGGTTTCGGAGAAGAAGAAGAAGGCCAAGAGAATGCCATCCCCTGAGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

251

Amino Acids

27.89

Weight (kDa)

9.16

Isoelectric Point (pI)

51.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44730
fragaria_vesca	FvH4_7g09240 FvH4_7g09240
malus_domestica	MD02G1219900.v1.1 MD07G1097000.v1.1 MD07G1097300.v1.1
prunus_persica	Prupe.2G121200_v2.0.a1 Prupe.2G121200_v2.0.a1
pyrus_communis	pycom02g18070 pycom07g08010
rosa_chinensis	RchiOBHm_Chr1g0345291
rosa_laevigata	RLG00000028841
rosa_multiflora	Rmu_sc0002329.1_g000011 Rmu_sc0031510.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309130
rosa_rugosa	Rorug01G0177200
rosa_samantha	Rh1AG195300 Rh1BG161400 Rh1CG179700 Rh1DG191800
rosa_wichuraiana	Rw1G016090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	21
AccB1I	GGYRCC	2 cut(s)	21, 314
AccIII	TCCGGA	2 cut(s)	12, 196
AciI	CCGC	9 cut(s)	19, 94, 285, 294, 306, 533, 625, 646, 701
AclWI	GGATC	5 cut(s)	28, 188, 201, 207, 402
AcsI	RAATTY	3 cut(s)	401, 412, 466
AcyI	GRCGYC	1 cut(s)	102
AfaI	GTAC	2 cut(s)	23, 227
AfiI	CCNNNNNNNGG	5 cut(s)	125, 324, 485, 486, 532
AgsI	TTSAA	1 cut(s)	91
AjiI	CACGTC	1 cut(s)	72
AjnI	CCWGG	2 cut(s)	44, 367
AluBI	AGCT	6 cut(s)	10, 125, 208, 220, 362, 556
AluI	AGCT	6 cut(s)	10, 125, 208, 220, 362, 556
Alw21I	GWGCWC	1 cut(s)	210
Alw26I	GTCTC	1 cut(s)	516
AlwI	GGATC	5 cut(s)	28, 188, 201, 207, 402
Aor13HI	TCCGGA	2 cut(s)	12, 196
AoxI	GGCC	3 cut(s)	116, 476, 723
ApeKI	GCWGC	1 cut(s)	122
ApoI	RAATTY	3 cut(s)	401, 412, 466
ArsI	GACNNNNNNTTYG	2 cut(s)	410, 442
Asp718I	GGTACC	1 cut(s)	21
AspS9I	GGNCC	4 cut(s)	82, 116, 372, 477
AsuC2I	CCSGG	2 cut(s)	153, 480
AsuHPI	GGTGA	1 cut(s)	460
AsuII	TTCGAA	1 cut(s)	416
AvaII	GGWCC	2 cut(s)	82, 372
AxyI	CCTNAGG	1 cut(s)	744
BamHI	GGATCC	1 cut(s)	193
BanI	GGYRCC	2 cut(s)	21, 314
BanII	GRGCYC	1 cut(s)	210
Bbv12I	GWGCWC	1 cut(s)	210
BbvCI	CCTCAGC	1 cut(s)	221
BbvI	GCAGC	1 cut(s)	134
BceAI	ACGGC	1 cut(s)	40
BciT130I	CCWGG	2 cut(s)	46, 369
BciVI	GTATCC	1 cut(s)	393
BcnI	CCSGG	2 cut(s)	153, 480
BcoDI	GTCTC	1 cut(s)	516
BfuI	GTATCC	1 cut(s)	393
BisI	GCNGC	1 cut(s)	123
BlpI	GCTNAGC	1 cut(s)	363
BlsI	GCNGC	1 cut(s)	124
Bme1390I	CCNGG	4 cut(s)	46, 153, 369, 480
Bme18I	GGWCC	2 cut(s)	82, 372
BmgBI	CACGTC	1 cut(s)	72
BmgT120I	GGNCC	4 cut(s)	82, 116, 372, 477
BmiI	GGNNCC	6 cut(s)	23, 83, 117, 195, 316, 373
BmrFI	CCNGG	4 cut(s)	46, 153, 369, 480
BmrI	ACTGGG	1 cut(s)	357
BmsI	GCATC	2 cut(s)	42, 612
BmuI	ACTGGG	1 cut(s)	357
Bpu10I	CCTNAGC	2 cut(s)	221, 444
Bpu1102I	GCTNAGC	1 cut(s)	363
Bpu14I	TTCGAA	1 cut(s)	416
BpuMI	CCSGG	2 cut(s)	153, 480
BsaBI	GATNNNNATC	1 cut(s)	198
BsaHI	GRCGYC	1 cut(s)	102
BsaI	GGTCTC	1 cut(s)	516
BsaJI	CCNNGG	4 cut(s)	105, 368, 375, 528
BsaWI	WCCGGW	3 cut(s)	12, 24, 196
BsaXI	ACNNNNNCTCC	6 cut(s)	209, 239, 261, 291, 527, 557
Bsc4I	CCNNNNNNNGG	5 cut(s)	125, 324, 485, 486, 532
Bse118I	RCCGGY	1 cut(s)	118
Bse1I	ACTGG	1 cut(s)	352
Bse21I	CCTNAGG	1 cut(s)	744
Bse8I	GATNNNNATC	1 cut(s)	198
BseAI	TCCGGA	2 cut(s)	12, 196
BseBI	CCWGG	2 cut(s)	46, 369
BseDI	CCNNGG	4 cut(s)	105, 368, 375, 528
BseGI	GGATG	5 cut(s)	102, 414, 585, 633, 737
BseJI	GATNNNNATC	1 cut(s)	198
BseLI	CCNNNNNNNGG	5 cut(s)	125, 324, 485, 486, 532
BseMII	CTCAG	5 cut(s)	21, 212, 377, 683, 735
BseNI	ACTGG	1 cut(s)	352
BseRI	GAGGAG	6 cut(s)	176, 179, 188, 200, 203, 230
BseXI	GCAGC	1 cut(s)	134
BseYI	CCCAGC	1 cut(s)	125
BshFI	GGCC	3 cut(s)	118, 478, 725
BshNI	GGYRCC	2 cut(s)	21, 314
BsiHKAI	GWGCWC	1 cut(s)	210
BsiSI	CCGG	7 cut(s)	13, 25, 119, 153, 197, 318, 480
BslFI	GGGAC	2 cut(s)	135, 385
BslI	CCNNNNNNNGG	5 cut(s)	125, 324, 485, 486, 532
BsmAI	GTCTC	1 cut(s)	516
BsmFI	GGGAC	2 cut(s)	135, 385
BsmI	GAATGC	1 cut(s)	738
BsnI	GGCC	3 cut(s)	118, 478, 725
Bso31I	GGTCTC	1 cut(s)	516
Bsp119I	TTCGAA	1 cut(s)	416
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp13I	TCCGGA	2 cut(s)	12, 196
Bsp143I	GATC	4 cut(s)	33, 193, 199, 394
Bsp1720I	GCTNAGC	1 cut(s)	363
Bsp19I	CCATGG	1 cut(s)	105
BspACI	CCGC	9 cut(s)	19, 94, 285, 294, 306, 533, 625, 646, 701
BspANI	GGCC	3 cut(s)	118, 478, 725
BspCNI	CTCAG	5 cut(s)	22, 213, 376, 682, 736
BspEI	TCCGGA	2 cut(s)	12, 196
BspLI	GGNNCC	6 cut(s)	23, 83, 117, 195, 316, 373
BspPI	GGATC	5 cut(s)	28, 188, 201, 207, 402
BspT104I	TTCGAA	1 cut(s)	416
BspT107I	GGYRCC	2 cut(s)	21, 314
BspTNI	GGTCTC	1 cut(s)	516
BsrFI	RCCGGY	1 cut(s)	118
BsrI	ACTGG	1 cut(s)	352
BssAI	RCCGGY	1 cut(s)	118
BssECI	CCNNGG	4 cut(s)	105, 368, 375, 528
BssMI	GATC	4 cut(s)	33, 193, 199, 394
BssNI	GRCGYC	1 cut(s)	102
BssT1I	CCWWGG	2 cut(s)	105, 375
Bst2UI	CCWGG	2 cut(s)	46, 369
Bst6I	CTCTTC	5 cut(s)	125, 153, 177, 236, 485
BstACI	GRCGYC	1 cut(s)	102
BstBI	TTCGAA	1 cut(s)	416
BstC8I	GCNNGC	2 cut(s)	42, 120
BstDEI	CTNAG	6 cut(s)	30, 221, 363, 444, 669, 744
BstDSI	CCRYGG	2 cut(s)	105, 528
BstF5I	GGATG	5 cut(s)	102, 414, 585, 633, 737
BstKTI	GATC	4 cut(s)	36, 196, 202, 397
BstMAI	GTCTC	1 cut(s)	516
BstMBI	GATC	4 cut(s)	33, 193, 199, 394
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 291
BstNI	CCWGG	2 cut(s)	46, 369
BstSCI	CCNGG	4 cut(s)	44, 151, 367, 478
BstV1I	GCAGC	1 cut(s)	134
BstX2I	RGATCY	2 cut(s)	33, 193
BstYI	RGATCY	2 cut(s)	33, 193
Bsu36I	CCTNAGG	1 cut(s)	744
BsuI	GTATCC	1 cut(s)	393
BsuRI	GGCC	3 cut(s)	118, 478, 725
BtgI	CCRYGG	2 cut(s)	105, 528
BtgZI	GCGATG	1 cut(s)	635
BtrI	CACGTC	1 cut(s)	72
BtsCI	GGATG	5 cut(s)	102, 414, 585, 633, 737
Cac8I	GCNNGC	2 cut(s)	42, 120
Cfr10I	RCCGGY	1 cut(s)	118
Cfr13I	GGNCC	4 cut(s)	82, 116, 372, 477
CseI	GACGC	2 cut(s)	110, 414
Csp6I	GTAC	2 cut(s)	22, 226
CviAII	CATG	1 cut(s)	106
CviQI	GTAC	2 cut(s)	22, 226
DdeI	CTNAG	6 cut(s)	30, 221, 363, 444, 669, 744
DpnI	GATC	4 cut(s)	35, 195, 201, 396
DpnII	GATC	4 cut(s)	33, 193, 199, 394
Eam1104I	CTCTTC	5 cut(s)	125, 153, 177, 236, 485
EarI	CTCTTC	5 cut(s)	125, 153, 177, 236, 485
EciI	GGCGGA	3 cut(s)	300, 309, 548
Ecl136II	GAGCTC	1 cut(s)	208
Eco130I	CCWWGG	2 cut(s)	105, 375
Eco24I	GRGCYC	1 cut(s)	210
Eco31I	GGTCTC	1 cut(s)	516
Eco47I	GGWCC	2 cut(s)	82, 372
Eco53kI	GAGCTC	1 cut(s)	208
Eco81I	CCTNAGG	1 cut(s)	744
EcoICRI	GAGCTC	1 cut(s)	208
EcoRI	GAATTC	2 cut(s)	412, 466
EcoRII	CCWGG	2 cut(s)	44, 367
EcoT14I	CCWWGG	2 cut(s)	105, 375
EcoT38I	GRGCYC	1 cut(s)	210
ErhI	CCWWGG	2 cut(s)	105, 375
FaeI	CATG	1 cut(s)	109
FaiI	YATR	8 cut(s)	107, 213, 239, 248, 261, 359, 435, 751
FaqI	GGGAC	2 cut(s)	135, 385
FatI	CATG	1 cut(s)	105
Fnu4HI	GCNGC	1 cut(s)	123
FokI	GGATG	5 cut(s)	109, 421, 592, 640, 724
FriOI	GRGCYC	1 cut(s)	210
Fsp4HI	GCNGC	1 cut(s)	123
GluI	GCNGC	1 cut(s)	123
GsaI	CCCAGC	1 cut(s)	129
HaeIII	GGCC	3 cut(s)	118, 478, 725
HapII	CCGG	7 cut(s)	13, 25, 119, 153, 197, 318, 480
HgaI	GACGC	2 cut(s)	110, 414
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	1 cut(s)	109
HindIII	AAGCTT	1 cut(s)	554
HinfI	GANTC	4 cut(s)	66, 340, 418, 665
HpaII	CCGG	7 cut(s)	13, 25, 119, 153, 197, 318, 480
HphI	GGTGA	1 cut(s)	460
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	4 cut(s)	145, 387, 399, 709
Hpy188III	TCNNGA	5 cut(s)	13, 63, 197, 203, 406
Hpy8I	GTNNAC	1 cut(s)	85
Hpy99I	CGWCG	3 cut(s)	76, 79, 430
HpyAV	CCTTC	4 cut(s)	106, 491, 691, 715
HpyCH4IV	ACGT	1 cut(s)	71
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 291
HpyF3I	CTNAG	6 cut(s)	30, 221, 363, 444, 669, 744
HpySE526I	ACGT	1 cut(s)	71
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	1 cut(s)	109
Kpn2I	TCCGGA	2 cut(s)	12, 196
KpnI	GGTACC	1 cut(s)	25
KroI	GCCGGC	1 cut(s)	118
KroNI	GCCGGC	1 cut(s)	120
Kzo9I	GATC	4 cut(s)	33, 193, 199, 394
LmnI	GCTCC	4 cut(s)	15, 205, 217, 583
Lsp1109I	GCAGC	1 cut(s)	134
LweI	GCATC	2 cut(s)	42, 612
MaeII	ACGT	1 cut(s)	71
MalI	GATC	4 cut(s)	35, 195, 201, 396
MboI	GATC	4 cut(s)	33, 193, 199, 394
MflI	RGATCY	2 cut(s)	33, 193
MhlI	GDGCHC	1 cut(s)	210
MluCI	AATT	4 cut(s)	401, 412, 466, 678
MlyI	GAGTC	1 cut(s)	659
MmeI	TCCRAC	1 cut(s)	368
MroI	TCCGGA	2 cut(s)	12, 196
MroNI	GCCGGC	1 cut(s)	118
MseI	TTAA	1 cut(s)	552
MspA1I	CMGCKG	1 cut(s)	125
MspI	CCGG	7 cut(s)	13, 25, 119, 153, 197, 318, 480
MspR9I	CCNGG	4 cut(s)	46, 153, 369, 480
Mva1269I	GAATGC	1 cut(s)	738
MvaI	CCWGG	2 cut(s)	46, 369
MwoI	GCNNNNNNNGC	2 cut(s)	16, 291
NaeI	GCCGGC	1 cut(s)	120
NciI	CCSGG	2 cut(s)	153, 480
NcoI	CCATGG	1 cut(s)	105
NdeII	GATC	4 cut(s)	33, 193, 199, 394
NgoMIV	GCCGGC	1 cut(s)	118
NlaIII	CATG	1 cut(s)	109
NlaIV	GGNNCC	6 cut(s)	23, 83, 117, 195, 316, 373
NspV	TTCGAA	1 cut(s)	416
PcsI	WCGNNNNNNNCGW	2 cut(s)	177, 422
PctI	GAATGC	1 cut(s)	738
PdiI	GCCGGC	1 cut(s)	120
PfeI	GAWTC	3 cut(s)	66, 340, 418
PkrI	GCNGC	1 cut(s)	124
PleI	GAGTC	1 cut(s)	659
PpsI	GAGTC	1 cut(s)	659
Psp124BI	GAGCTC	1 cut(s)	210
Psp6I	CCWGG	2 cut(s)	44, 367
PspFI	CCCAGC	1 cut(s)	125
PspGI	CCWGG	2 cut(s)	44, 367
PspN4I	GGNNCC	6 cut(s)	23, 83, 117, 195, 316, 373
PspPI	GGNCC	4 cut(s)	82, 116, 372, 477
PsuI	RGATCY	2 cut(s)	33, 193
PvuII	CAGCTG	1 cut(s)	125
RsaI	GTAC	2 cut(s)	23, 227
RsaNI	GTAC	2 cut(s)	22, 226
SacI	GAGCTC	1 cut(s)	210
SaqAI	TTAA	1 cut(s)	552
SatI	GCNGC	1 cut(s)	123
Sau3AI	GATC	4 cut(s)	33, 193, 199, 394
Sau96I	GGNCC	4 cut(s)	82, 116, 372, 477
SchI	GAGTC	1 cut(s)	659
ScrFI	CCNGG	4 cut(s)	46, 153, 369, 480
SduI	GDGCHC	1 cut(s)	210
SfaNI	GCATC	2 cut(s)	42, 612
SfuI	TTCGAA	1 cut(s)	416
SinI	GGWCC	2 cut(s)	82, 372
Sse9I	AATT	4 cut(s)	401, 412, 466, 678
SsiI	CCGC	9 cut(s)	19, 94, 285, 294, 306, 533, 625, 646, 701
SstI	GAGCTC	1 cut(s)	210
StyD4I	CCNGG	4 cut(s)	44, 151, 367, 478
StyI	CCWWGG	2 cut(s)	105, 375
TaiI	ACGT	1 cut(s)	74
TaqI	TCGA	4 cut(s)	50, 233, 416, 615
TasI	AATT	4 cut(s)	401, 412, 466, 678
TfiI	GAWTC	3 cut(s)	66, 340, 418
Tru1I	TTAA	1 cut(s)	552
Tru9I	TTAA	1 cut(s)	552
TseI	GCWGC	1 cut(s)	122
TspDTI	ATGAA	4 cut(s)	254, 425, 605, 656
TspGWI	ACGGA	1 cut(s)	665
VpaK11BI	GGWCC	2 cut(s)	82, 372
XapI	RAATTY	3 cut(s)	401, 412, 466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.