AT2G45320

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0015348
Physical Location & Seq
Reverse (-)
18684116 .. 18686197
2082 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G45320.1

Sequence Viewer

Length: 1179 bp
ATGGGTTCCCGGAGAGATTATCGGAGCATGAGATCTTGTAGCGGATGGCGTCGAATTCTTTTACTTATTCCTGTGCTCTTTCTTCTTCCTCATCTCTCTTCACTTGTTGATTTTTCTTCGGATTCGGCTACGAGGAACGACGCGCGAACCATTCCTAATAAGAAATTGGATCACCTTGTGCTCGGTCCTGTAGCTGGACAAGGCTTGTCTGATCGATTTCATTGCCGAGGCACGAAGGCTCTGAACAAGACTCATGGTTCAACTTCTCATGTGTCTGGTGCTGGAAATGGCGTTTCTTTTGTGACGGTGTTTACTGTTTATAATACGTCGCTCGGAAATGTGAAATCCTCCAATCCGGTTTCTGTTGTTGGGAATGTTACCTACAGCAAGCCAGAGAGGTCAATGGCTGTTCTAAATGCATTCGCCAACTTCATTCAGGTGACTATGCCCAAGAGCAATGTTGTCATATTGACTGATCCAGCTTCTGATCTCTCCATCCAACAAAGCAATGTGATATTACAGCCTGTTCAGGGTGATTATTCACGGGGTAACCTGATGCTTCAAAGAATCAGGTCTTACATTACCTTTCTTGAGATGAAGCTCGAGAAGAATGAGGGTGGGATAAACCACTATATCTTCACTGATTCTGATATAGCTGTGGTTGACGACGTCGGGACTATATTTGACAAGCATTCAAGCTTCCATCTAGCACTCACATTCAGGAACAATAAAGATCAGCCGTTGAATTCAGGATTTATAGCAGTGAGAGGCACACGTGAAGGGATCCTAAGGGCCAAAGTTTTTCTTGAAGAAGTCCTAAAAGCTTACAAAACCAAATACATGAAAGCTTCGCGCATGCTTGGTGATCAGTTGGCTCTGGTATCGGTTGTTAAATCTCATGCTTCCTTTGACGCAAAGAGATTCACAAAGCCACAAGCTTTCACAGAAGAAATAGCTGGAGCTTCAGTGTTATTTCTACCATGTGCTCTATACAACTGGACACCTCCTGAAGGTGCTGGTCAGTTTCATGGCATGCCATTAGATGTCAAGATTGTTCACTTCAAAGGATCAAGAAAACGTTTAATGCTCGAGGCATGGAACTTCTACAAATCTACTTCAAACATTCCAGATATGTTGTGTCTTGTTCTAGGTAGTGGAAGAACTAAATACGATTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

392

Amino Acids

43.48

Weight (kDa)

9.69

Isoelectric Point (pI)

38.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45320
fragaria_vesca FvH4_1g28100 FvH4_1g28100
malus_domestica MD00G1094900.v1.1
prunus_persica Prupe.6G155400_v2.0.a1
pyrus_communis pycom5153684g00430
rosa_chinensis RchiOBHm_Chr3g0497141
rosa_laevigata RLG00000022478
rosa_multiflora Rmu_sc0002893.1_g000029
rosa_roxburghii Rroxscaffold_6G00388380
rosa_rugosa Rorug03G0291300
rosa_samantha Rh3AG334600 Rh3BG371700 Rh3CG368400 Rh3DG369400
rosa_wichuraiana Rw3G029360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 321
AatII GACGTC 1 cut(s) 672
AccII CGCG 3 cut(s) 143, 145, 853
AciI CCGC 1 cut(s) 42
AclI AACGTT 1 cut(s) 1078
AclWI GGATC 5 cut(s) 177, 470, 778, 791, 1075
AcsI RAATTY 2 cut(s) 54, 745
AcuI CTGAAG 2 cut(s) 948, 1029
AcvI CACGTG 1 cut(s) 776
AcyI GRCGYC 2 cut(s) 49, 669
AdeI CACNNNGTG 1 cut(s) 178
AfiI CCNNNNNNNGG 3 cut(s) 194, 530, 1010
AflIII ACRYGT 1 cut(s) 773
AgsI TTSAA 7 cut(s) 261, 563, 696, 745, 809, 1063, 1119
Alw21I GWGCWC 3 cut(s) 78, 183, 988
AlwI GGATC 5 cut(s) 177, 470, 778, 791, 1075
AlwNI CAGNNNCTG 1 cut(s) 485
Ama87I CYCGRG 2 cut(s) 602, 1088
AoxI GGCC 1 cut(s) 792
ApoI RAATTY 2 cut(s) 54, 745
AspLEI GCGC 2 cut(s) 145, 855
AspS9I GGNCC 2 cut(s) 185, 792
AsuC2I CCSGG 1 cut(s) 10
AsuHPI GGTGA 4 cut(s) 164, 451, 545, 875
AvaI CYCGRG 2 cut(s) 602, 1088
AvaII GGWCC 1 cut(s) 185
AxyI CCTNAGG 1 cut(s) 788
BamHI GGATCC 1 cut(s) 783
BbrPI CACGTG 1 cut(s) 776
Bbv12I GWGCWC 3 cut(s) 78, 183, 988
BccI CCATC 3 cut(s) 39, 503, 711
BceAI ACGGC 1 cut(s) 724
BcgI CGANNNNNNTGC 2 cut(s) 204, 238
BclI TGATCA 1 cut(s) 865
BcnI CCSGG 1 cut(s) 10
BfaI CTAG 2 cut(s) 707, 1148
BfmI CTRYAG 2 cut(s) 189, 382
BglII AGATCT 1 cut(s) 32
Bme1390I CCNGG 1 cut(s) 10
Bme18I GGWCC 1 cut(s) 185
BmeT110I CYCGRG 2 cut(s) 602, 1088
BmgT120I GGNCC 2 cut(s) 185, 792
BmiI GGNNCC 2 cut(s) 7, 785
BmrFI CCNGG 1 cut(s) 10
BmsI GCATC 1 cut(s) 546
BpmI CTGGAG 1 cut(s) 978
BpuEI CTTGAG 1 cut(s) 611
BpuMI CCSGG 1 cut(s) 10
Bsa29I ATCGAT 1 cut(s) 214
BsaAI YACGTR 1 cut(s) 776
BsaHI GRCGYC 2 cut(s) 49, 669
BsaJI CCNNGG 1 cut(s) 226
BsaWI WCCGGW 1 cut(s) 355
BsaXI ACNNNNNCTCC 2 cut(s) 951, 981
Bsc4I CCNNNNNNNGG 3 cut(s) 194, 530, 1010
Bse1I ACTGG 1 cut(s) 1001
Bse21I CCTNAGG 1 cut(s) 788
Bse3DI GCAATG 3 cut(s) 220, 463, 514
BseCI ATCGAT 1 cut(s) 214
BseDI CCNNGG 1 cut(s) 226
BseGI GGATG 2 cut(s) 50, 495
BseLI CCNNNNNNNGG 3 cut(s) 194, 530, 1010
BseMI GCAATG 3 cut(s) 220, 463, 514
BseNI ACTGG 1 cut(s) 1001
Bsh1236I CGCG 3 cut(s) 143, 145, 853
BshFI GGCC 1 cut(s) 794
BshVI ATCGAT 1 cut(s) 214
BsiHKAI GWGCWC 3 cut(s) 78, 183, 988
BsiHKCI CYCGRG 2 cut(s) 602, 1088
BsiSI CCGG 2 cut(s) 10, 356
BslFI GGGAC 1 cut(s) 688
BslI CCNNNNNNNGG 3 cut(s) 194, 530, 1010
BsmFI GGGAC 1 cut(s) 688
BsmI GAATGC 2 cut(s) 419, 691
BsnI GGCC 1 cut(s) 794
BsoBI CYCGRG 2 cut(s) 602, 1088
Bsp1286I GDGCHC 3 cut(s) 78, 183, 988
Bsp143I GATC 9 cut(s) 32, 169, 211, 475, 487, 733, 783, 865, 1067
BspACI CCGC 1 cut(s) 42
BspANI GGCC 1 cut(s) 794
BspDI ATCGAT 1 cut(s) 214
BspFNI CGCG 3 cut(s) 143, 145, 853
BspLI GGNNCC 2 cut(s) 7, 785
BspPI GGATC 5 cut(s) 177, 470, 778, 791, 1075
BsrDI GCAATG 3 cut(s) 220, 463, 514
BsrI ACTGG 1 cut(s) 1001
BssECI CCNNGG 1 cut(s) 226
BssMI GATC 9 cut(s) 32, 169, 211, 475, 487, 733, 783, 865, 1067
BssNI GRCGYC 2 cut(s) 49, 669
Bst4CI ACNGT 2 cut(s) 307, 316
Bst6I CTCTTC 1 cut(s) 103
BstACI GRCGYC 2 cut(s) 49, 669
BstBAI YACGTR 1 cut(s) 776
BstC8I GCNNGC 3 cut(s) 389, 857, 1034
BstDEI CTNAG 1 cut(s) 788
BstEII GGTNACC 1 cut(s) 548
BstENI CCTNNNNNAGG 1 cut(s) 1008
BstF5I GGATG 2 cut(s) 50, 495
BstFNI CGCG 3 cut(s) 143, 145, 853
BstHHI GCGC 2 cut(s) 145, 855
BstKTI GATC 9 cut(s) 35, 172, 214, 478, 490, 736, 786, 868, 1070
BstMBI GATC 9 cut(s) 32, 169, 211, 475, 487, 733, 783, 865, 1067
BstNSI RCATGY 2 cut(s) 859, 1036
BstPI GGTNACC 1 cut(s) 548
BstSCI CCNGG 1 cut(s) 8
BstSFI CTRYAG 2 cut(s) 189, 382
BstUI CGCG 3 cut(s) 143, 145, 853
BstX2I RGATCY 2 cut(s) 32, 783
BstYI RGATCY 2 cut(s) 32, 783
Bsu15I ATCGAT 1 cut(s) 214
Bsu36I CCTNAGG 1 cut(s) 788
BsuRI GGCC 1 cut(s) 794
BsuTUI ATCGAT 1 cut(s) 214
BtsCI GGATG 2 cut(s) 50, 495
BtsI GCAGTG 1 cut(s) 768
BtsIMutI CAGTG 3 cut(s) 639, 768, 972
Cac8I GCNNGC 3 cut(s) 389, 857, 1034
CaiI CAGNNNCTG 1 cut(s) 485
CfoI GCGC 2 cut(s) 145, 855
Cfr13I GGNCC 2 cut(s) 185, 792
ClaI ATCGAT 1 cut(s) 214
CseI GACGC 3 cut(s) 38, 149, 920
DdeI CTNAG 1 cut(s) 788
DpnI GATC 9 cut(s) 34, 171, 213, 477, 489, 735, 785, 867, 1069
DpnII GATC 9 cut(s) 32, 169, 211, 475, 487, 733, 783, 865, 1067
DraIII CACNNNGTG 1 cut(s) 178
Eam1104I CTCTTC 1 cut(s) 103
EarI CTCTTC 1 cut(s) 103
Eco47I GGWCC 1 cut(s) 185
Eco57I CTGAAG 2 cut(s) 948, 1029
Eco72I CACGTG 1 cut(s) 776
Eco81I CCTNAGG 1 cut(s) 788
Eco88I CYCGRG 2 cut(s) 602, 1088
Eco91I GGTNACC 1 cut(s) 548
EcoNI CCTNNNNNAGG 1 cut(s) 1008
EcoO65I GGTNACC 1 cut(s) 548
EcoRI GAATTC 2 cut(s) 54, 745
EcoT22I ATGCAT 1 cut(s) 421
FalI AAGNNNNNCTT 2 cut(s) 789, 821
FaqI GGGAC 1 cut(s) 688
FbaI TGATCA 1 cut(s) 865
FokI GGATG 2 cut(s) 57, 482
FspBI CTAG 2 cut(s) 707, 1148
GlaI GCGC 2 cut(s) 144, 854
GsuI CTGGAG 1 cut(s) 978
HaeIII GGCC 1 cut(s) 794
HapII CCGG 2 cut(s) 10, 356
HgaI GACGC 3 cut(s) 38, 149, 920
HhaI GCGC 2 cut(s) 145, 855
Hin1I GRCGYC 2 cut(s) 49, 669
Hin6I GCGC 2 cut(s) 143, 853
HinP1I GCGC 2 cut(s) 143, 853
HincII GTYRAC 1 cut(s) 664
HindII GTYRAC 1 cut(s) 664
HindIII AAGCTT 4 cut(s) 697, 822, 846, 936
HinfI GANTC 5 cut(s) 122, 250, 567, 644, 921
HpaII CCGG 2 cut(s) 10, 356
HphI GGTGA 4 cut(s) 164, 451, 545, 875
Hpy166II GTNNAC 3 cut(s) 312, 664, 1057
Hpy188I TCNGA 8 cut(s) 24, 121, 211, 243, 335, 487, 649, 1178
Hpy8I GTNNAC 3 cut(s) 312, 664, 1057
Hpy99I CGWCG 5 cut(s) 54, 143, 331, 671, 674
HpyAV CCTTC 3 cut(s) 229, 773, 1004
HpyCH4III ACNGT 2 cut(s) 307, 316
HpyCH4IV ACGT 4 cut(s) 326, 669, 775, 1078
HpyCH4V TGCA 1 cut(s) 419
HpyF3I CTNAG 1 cut(s) 788
HpySE526I ACGT 4 cut(s) 326, 669, 775, 1078
Hsp92I GRCGYC 2 cut(s) 49, 669
HspAI GCGC 2 cut(s) 143, 853
Ksp22I TGATCA 1 cut(s) 865
Kzo9I GATC 9 cut(s) 32, 169, 211, 475, 487, 733, 783, 865, 1067
LmnI GCTCC 2 cut(s) 24, 959
LweI GCATC 1 cut(s) 546
MaeI CTAG 2 cut(s) 707, 1148
MaeII ACGT 4 cut(s) 326, 669, 775, 1078
MaeIII GTNAC 4 cut(s) 301, 376, 439, 548
MalI GATC 9 cut(s) 34, 171, 213, 477, 489, 735, 785, 867, 1069
MboI GATC 9 cut(s) 32, 169, 211, 475, 487, 733, 783, 865, 1067
MboII GAAGA 9 cut(s) 74, 77, 90, 108, 619, 628, 821, 959, 1170
MflI RGATCY 2 cut(s) 32, 783
MhlI GDGCHC 3 cut(s) 78, 183, 988
MluCI AATT 3 cut(s) 54, 164, 745
MlyI GAGTC 1 cut(s) 244
MmeI TCCRAC 1 cut(s) 523
MnlI CCTC 9 cut(s) 99, 126, 221, 358, 390, 607, 761, 1014, 1084
Mph1103I ATGCAT 1 cut(s) 421
MseI TTAA 2 cut(s) 891, 1082
MslI CAYNNNNRTG 1 cut(s) 437
MspI CCGG 2 cut(s) 10, 356
MspR9I CCNGG 1 cut(s) 10
Mva1269I GAATGC 2 cut(s) 419, 691
MvnI CGCG 3 cut(s) 143, 145, 853
NciI CCSGG 1 cut(s) 10
NdeII GATC 9 cut(s) 32, 169, 211, 475, 487, 733, 783, 865, 1067
NlaIV GGNNCC 2 cut(s) 7, 785
NmeAIII GCCGAG 1 cut(s) 251
NmuCI GTSAC 2 cut(s) 301, 439
NsiI ATGCAT 1 cut(s) 421
NspI RCATGY 2 cut(s) 859, 1036
PaeI GCATGC 2 cut(s) 859, 1036
PaeR7I CTCGAG 2 cut(s) 602, 1088
PctI GAATGC 2 cut(s) 419, 691
PfeI GAWTC 4 cut(s) 122, 567, 644, 921
PflFI GACNNNGTC 1 cut(s) 668
PfoI TCCNGGA 1 cut(s) 8
PleI GAGTC 1 cut(s) 244
PmaCI CACGTG 1 cut(s) 776
PmlI CACGTG 1 cut(s) 776
PpsI GAGTC 1 cut(s) 244
Ppu21I YACGTR 1 cut(s) 776
PsiI TTATAA 1 cut(s) 321
Psp1406I AACGTT 1 cut(s) 1078
PspCI CACGTG 1 cut(s) 776
PspEI GGTNACC 1 cut(s) 548
PspN4I GGNNCC 2 cut(s) 7, 785
PspPI GGNCC 2 cut(s) 185, 792
PspXI VCTCGAGB 1 cut(s) 1088
PstNI CAGNNNCTG 1 cut(s) 485
PsuI RGATCY 2 cut(s) 32, 783
PsyI GACNNNGTC 1 cut(s) 668
RseI CAYNNNNRTG 1 cut(s) 437
SaqAI TTAA 2 cut(s) 891, 1082
Sau3AI GATC 9 cut(s) 32, 169, 211, 475, 487, 733, 783, 865, 1067
Sau96I GGNCC 2 cut(s) 185, 792
SchI GAGTC 1 cut(s) 244
ScrFI CCNGG 1 cut(s) 10
SduI GDGCHC 3 cut(s) 78, 183, 988
SfaNI GCATC 1 cut(s) 546
SfcI CTRYAG 2 cut(s) 189, 382
Sfr274I CTCGAG 2 cut(s) 602, 1088
SinI GGWCC 1 cut(s) 185
SlaI CTCGAG 2 cut(s) 602, 1088
SmiMI CAYNNNNRTG 1 cut(s) 437
SmlI CTYRAG 3 cut(s) 590, 602, 1088
SmoI CTYRAG 3 cut(s) 590, 602, 1088
SphI GCATGC 2 cut(s) 859, 1036
Sse9I AATT 3 cut(s) 54, 164, 745
SsiI CCGC 1 cut(s) 42
SspMI CTAG 2 cut(s) 707, 1148
StyD4I CCNGG 1 cut(s) 8
TaaI ACNGT 2 cut(s) 307, 316
TaiI ACGT 4 cut(s) 329, 672, 778, 1081
TaqI TCGA 4 cut(s) 52, 214, 603, 1089
TaqII GACCGA 1 cut(s) 173
TasI AATT 3 cut(s) 54, 164, 745
TfiI GAWTC 4 cut(s) 122, 567, 644, 921
Tru1I TTAA 2 cut(s) 891, 1082
Tru9I TTAA 2 cut(s) 891, 1082
TscAI CASTG 3 cut(s) 646, 768, 972
TseFI GTSAC 2 cut(s) 301, 439
Tsp45I GTSAC 2 cut(s) 301, 439
TspDTI ATGAA 5 cut(s) 209, 421, 611, 857, 1016
TspRI CASTG 3 cut(s) 646, 768, 972
Tth111I GACNNNGTC 1 cut(s) 668
VpaK11BI GGWCC 1 cut(s) 185
XagI CCTNNNNNAGG 1 cut(s) 1008
XapI RAATTY 2 cut(s) 54, 745
XceI RCATGY 2 cut(s) 859, 1036
XhoI CTCGAG 2 cut(s) 602, 1088
XspI CTAG 2 cut(s) 707, 1148
ZraI GACGTC 1 cut(s) 670
Zsp2I ATGCAT 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.