RchiOBHm_Chr3g0497141

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0015348
Physical Location & Seq
Reverse (-)
48802282 .. 48806226
3945 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45936

Sequence Viewer

Length: 1152 bp
ATGATGAGGACCATAAGTGGATGGCGTCGCTTCCTCATCCTCGTCCCTCTTCTTTTCTTTCTTGCTCACTTCTTCTCCGTTGATCAATTGCATTACAACCCACGACCTGTGCCCAACAAACAAAGCAAATTCAACCACTTGGTTCTCGGACCTGCTGCCGGCCAAGGCTTGACCAATCGTCTCCAATGCCAACCCCAAGGAATCAAAGCTCTTAACAAAACCCATTTCTCCTCTGCCACTGCCCCTGCACTTGATAACATTCACTTTGTCACCGTCTTTACCCTATATAATTCCATCCGTCCCGATTATCAGTTATCAAACTTGGTTACAGTTGGCAATGCTTCTTACACTAAATTGGAGAGGTCTATGGCCATTCTCAATATTTTTGTTAACTTCATCCAGGTGGCAATGCCCCGGAGCGATGTAGTGATTTTAACTGACCCAGCATCTGATCTTTCAATGCACAGAAATGGGGTCACCATTTATCCAATTCAAGGTGAATATTCGCGAGACAAGTTGATGCTTCAAAGAATCAGGTCTTACATTGCCTTCCTAGAAACAAGGATGGAGGAGGTTTCTCAGAACCAAGGTCATATTCATCATTACATCTTCACCGACTCAGATATAGCTGTGGTTGATGATCTAGGACATATATTTCATGATTATCCAAATTTTCATCTGGCGCTGACCTTCCGGAACAACAAAGAACAACCTCTGAATTCAGGATTTATAGCAGTCAGGGGTACTCCTGCTGGCATTTTAAGGGCAAAGACTTTTCTACAAGAAGTACTGAAAGTTTACAGGTCAAGGTACATGAAAGCTTCACGGATGCTTGGGGATCAGTTGGCCCTTGCCTGGGTGGTCAAGTCACACCCATCTTTTGATCCAAAGAAATTCACTAAAGCCCAAGCTTTCATAGAAGATATCGGCGGTGCTGCAGTGTTATTTTTACCCTGTGCTGTATACAATTGGACACCACCAGAGGGTGCAGGTCAATTTCATGGCATGCCCTTGGATGTTAAGGTCATTCATTTCAAAGGATCAAGGAAACGACTAATGCTCGAATCATGGAACTTCTTCAGTGCATCTTCTGACATTTCAGATATGTTGTGTCTGATATTGAAGAGTGGGAGAACGAAGTACGATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

383

Amino Acids

43.53

Weight (kDa)

9.56

Isoelectric Point (pI)

46.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45320
fragaria_vesca FvH4_1g28100 FvH4_1g28100
malus_domestica MD00G1094900.v1.1
prunus_persica Prupe.6G155400_v2.0.a1
pyrus_communis pycom5153684g00430
rosa_chinensis RchiOBHm_Chr3g0497141
rosa_laevigata RLG00000022478
rosa_multiflora Rmu_sc0002893.1_g000029
rosa_roxburghii Rroxscaffold_6G00388380
rosa_rugosa Rorug03G0291300
rosa_samantha Rh3AG334600 Rh3BG371700 Rh3CG368400 Rh3DG369400
rosa_wichuraiana Rw3G029360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 160, 980
AccI GTMKAC 1 cut(s) 963
AccII CGCG 1 cut(s) 508
AccIII TCCGGA 1 cut(s) 693
AciI CCGC 1 cut(s) 930
AclWI GGATC 3 cut(s) 846, 878, 1048
AcoI YGGCCR 2 cut(s) 160, 369
AcsI RAATTY 4 cut(s) 128, 670, 718, 893
AcuI CTGAAG 1 cut(s) 1063
AcyI GRCGYC 1 cut(s) 25
AfaI GTAC 4 cut(s) 745, 789, 812, 1142
AfiI CCNNNNNNNGG 5 cut(s) 158, 494, 855, 856, 983
AgsI TTSAA 6 cut(s) 133, 459, 494, 527, 1036, 1123
AhdI GACNNNNNGTC 1 cut(s) 177
AjnI CCWGG 2 cut(s) 399, 854
AjuI GAANNNNNNNTTGG 2 cut(s) 579, 611
AluBI AGCT 4 cut(s) 209, 629, 821, 911
AluI AGCT 4 cut(s) 209, 629, 821, 911
Alw26I GTCTC 2 cut(s) 185, 504
AlwI GGATC 3 cut(s) 846, 878, 1048
AlwNI CAGNNNCTG 1 cut(s) 449
Aor13HI TCCGGA 1 cut(s) 693
AoxI GGCC 3 cut(s) 160, 369, 846
ApeKI GCWGC 2 cut(s) 155, 935
ApoI RAATTY 4 cut(s) 128, 670, 718, 893
Asp700I GAANNNNTTC 1 cut(s) 1076
AspLEI GCGC 1 cut(s) 685
AspS9I GGNCC 3 cut(s) 9, 149, 847
AsuC2I CCSGG 1 cut(s) 415
AsuHPI GGTGA 4 cut(s) 262, 469, 509, 604
AvaII GGWCC 2 cut(s) 9, 149
BaeGI GKGCMC 1 cut(s) 114
BalI TGGCCA 1 cut(s) 371
BbvI GCAGC 2 cut(s) 142, 922
BccI CCATC 4 cut(s) 15, 302, 559, 883
BciT130I CCWGG 2 cut(s) 401, 856
BclI TGATCA 1 cut(s) 82
BcnI CCSGG 1 cut(s) 415
BcoDI GTCTC 2 cut(s) 185, 504
BfaI CTAG 2 cut(s) 554, 644
BfmI CTRYAG 1 cut(s) 936
BfoI RGCGCY 1 cut(s) 686
BfuAI ACCTGC 2 cut(s) 160, 980
BisI GCNGC 2 cut(s) 156, 936
BlsI GCNGC 2 cut(s) 157, 937
BmcAI AGTACT 1 cut(s) 789
Bme1390I CCNGG 3 cut(s) 401, 415, 856
Bme18I GGWCC 2 cut(s) 9, 149
BmeRI GACNNNNNGTC 1 cut(s) 177
BmgT120I GGNCC 3 cut(s) 9, 149, 847
BmrFI CCNGG 3 cut(s) 401, 415, 856
BmsI GCATC 4 cut(s) 455, 510, 819, 1094
BpuMI CCSGG 1 cut(s) 415
BsaHI GRCGYC 1 cut(s) 25
BsaJI CCNNGG 6 cut(s) 163, 196, 413, 586, 855, 1011
BsaWI WCCGGW 1 cut(s) 693
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bsc4I CCNNNNNNNGG 5 cut(s) 158, 494, 855, 856, 983
Bse118I RCCGGY 1 cut(s) 158
Bse3DI GCAATG 3 cut(s) 343, 414, 543
BseAI TCCGGA 1 cut(s) 693
BseBI CCWGG 2 cut(s) 401, 856
BseDI CCNNGG 6 cut(s) 163, 196, 413, 586, 855, 1011
BseGI GGATG 7 cut(s) 26, 36, 294, 396, 570, 834, 1021
BseLI CCNNNNNNNGG 5 cut(s) 158, 494, 855, 856, 983
BseMI GCAATG 3 cut(s) 343, 414, 543
BseMII CTCAG 2 cut(s) 593, 633
BseRI GAGGAG 2 cut(s) 220, 584
BseSI GKGCMC 1 cut(s) 114
BseXI GCAGC 2 cut(s) 142, 922
BseYI CCCAGC 1 cut(s) 442
BsgI GTGCAG 2 cut(s) 231, 1008
Bsh1236I CGCG 1 cut(s) 508
BshFI GGCC 3 cut(s) 162, 371, 848
BsiSI CCGG 3 cut(s) 159, 415, 694
BslFI GGGAC 2 cut(s) 29, 285
BslI CCNNNNNNNGG 5 cut(s) 158, 494, 855, 856, 983
BsmAI GTCTC 2 cut(s) 185, 504
BsmBI CGTCTC 1 cut(s) 185
BsmFI GGGAC 2 cut(s) 29, 285
BsnI GGCC 3 cut(s) 162, 371, 848
Bsp1286I GDGCHC 1 cut(s) 114
Bsp13I TCCGGA 1 cut(s) 693
Bsp143I GATC 6 cut(s) 82, 451, 640, 838, 883, 1040
Bsp68I TCGCGA 1 cut(s) 508
BspACI CCGC 1 cut(s) 930
BspANI GGCC 3 cut(s) 162, 371, 848
BspCNI CTCAG 2 cut(s) 592, 632
BspEI TCCGGA 1 cut(s) 693
BspFNI CGCG 1 cut(s) 508
BspHI TCATGA 1 cut(s) 658
BspMAI CTGCAG 1 cut(s) 940
BspMI ACCTGC 2 cut(s) 160, 980
BspPI GGATC 3 cut(s) 846, 878, 1048
BsrDI GCAATG 3 cut(s) 343, 414, 543
BsrFI RCCGGY 1 cut(s) 158
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 6 cut(s) 163, 196, 413, 586, 855, 1011
BssMI GATC 6 cut(s) 82, 451, 640, 838, 883, 1040
BssNAI GTATAC 1 cut(s) 964
BssNI GRCGYC 1 cut(s) 25
BssT1I CCWWGG 4 cut(s) 163, 196, 586, 1011
Bst1107I GTATAC 1 cut(s) 964
Bst2UI CCWGG 2 cut(s) 401, 856
Bst4CI ACNGT 2 cut(s) 274, 331
Bst6I CTCTTC 2 cut(s) 54, 1118
BstACI GRCGYC 1 cut(s) 25
BstC8I GCNNGC 3 cut(s) 160, 754, 1007
BstDEI CTNAG 2 cut(s) 579, 619
BstEII GGTNACC 1 cut(s) 475
BstF5I GGATG 7 cut(s) 26, 36, 294, 396, 570, 834, 1021
BstFNI CGCG 1 cut(s) 508
BstH2I RGCGCY 1 cut(s) 686
BstHHI GCGC 1 cut(s) 685
BstKTI GATC 6 cut(s) 85, 454, 643, 841, 886, 1043
BstMAI GTCTC 2 cut(s) 185, 504
BstMBI GATC 6 cut(s) 82, 451, 640, 838, 883, 1040
BstNI CCWGG 2 cut(s) 401, 856
BstNSI RCATGY 1 cut(s) 1009
BstPI GGTNACC 1 cut(s) 475
BstSCI CCNGG 3 cut(s) 399, 413, 854
BstSFI CTRYAG 1 cut(s) 936
BstSLI GKGCMC 1 cut(s) 114
BstUI CGCG 1 cut(s) 508
BstV1I GCAGC 2 cut(s) 142, 922
BstZ17I GTATAC 1 cut(s) 964
BsuRI GGCC 3 cut(s) 162, 371, 848
BtgZI GCGATG 1 cut(s) 435
BtsCI GGATG 7 cut(s) 26, 36, 294, 396, 570, 834, 1021
BtsI GCAGTG 2 cut(s) 237, 945
BtsIMutI CAGTG 3 cut(s) 237, 945, 1087
BtuMI TCGCGA 1 cut(s) 508
BveI ACCTGC 2 cut(s) 160, 980
Cac8I GCNNGC 3 cut(s) 160, 754, 1007
CaiI CAGNNNCTG 1 cut(s) 449
CciI TCATGA 1 cut(s) 658
CfoI GCGC 1 cut(s) 685
Cfr10I RCCGGY 1 cut(s) 158
Cfr13I GGNCC 3 cut(s) 9, 149, 847
CseI GACGC 1 cut(s) 14
Csp6I GTAC 4 cut(s) 744, 788, 811, 1141
CviAII CATG 5 cut(s) 659, 814, 1001, 1006, 1068
CviJI RGCY 9 cut(s) 162, 168, 209, 371, 629, 821, 848, 905, 911
CviKI_1 RGCY 9 cut(s) 162, 168, 209, 371, 629, 821, 848, 905, 911
CviQI GTAC 4 cut(s) 744, 788, 811, 1141
DdeI CTNAG 2 cut(s) 579, 619
DpnI GATC 6 cut(s) 84, 453, 642, 840, 885, 1042
DpnII GATC 6 cut(s) 82, 451, 640, 838, 883, 1040
DriI GACNNNNNGTC 1 cut(s) 177
EaeI YGGCCR 2 cut(s) 160, 369
Eam1104I CTCTTC 2 cut(s) 54, 1118
Eam1105I GACNNNNNGTC 1 cut(s) 177
EarI CTCTTC 2 cut(s) 54, 1118
Eco130I CCWWGG 4 cut(s) 163, 196, 586, 1011
Eco32I GATATC 1 cut(s) 925
Eco47I GGWCC 2 cut(s) 9, 149
Eco57I CTGAAG 1 cut(s) 1063
Eco91I GGTNACC 1 cut(s) 475
EcoO65I GGTNACC 1 cut(s) 475
EcoRI GAATTC 1 cut(s) 718
EcoRII CCWGG 2 cut(s) 399, 854
EcoRV GATATC 1 cut(s) 925
EcoT14I CCWWGG 4 cut(s) 163, 196, 586, 1011
ErhI CCWWGG 4 cut(s) 163, 196, 586, 1011
Esp3I CGTCTC 1 cut(s) 185
FaeI CATG 5 cut(s) 662, 817, 1004, 1009, 1071
FaqI GGGAC 2 cut(s) 29, 285
FatI CATG 5 cut(s) 658, 813, 1000, 1005, 1067
FbaI TGATCA 1 cut(s) 82
FblI GTMKAC 1 cut(s) 963
Fnu4HI GCNGC 2 cut(s) 156, 936
FokI GGATG 7 cut(s) 23, 33, 281, 383, 577, 841, 1028
Fsp4HI GCNGC 2 cut(s) 156, 936
FspBI CTAG 2 cut(s) 554, 644
GlaI GCGC 1 cut(s) 684
GluI GCNGC 2 cut(s) 156, 936
GsaI CCCAGC 1 cut(s) 446
HaeII RGCGCY 1 cut(s) 686
HaeIII GGCC 3 cut(s) 162, 371, 848
HapII CCGG 3 cut(s) 159, 415, 694
HgaI GACGC 1 cut(s) 14
HhaI GCGC 1 cut(s) 685
Hin1I GRCGYC 1 cut(s) 25
Hin1II CATG 5 cut(s) 662, 817, 1004, 1009, 1071
Hin6I GCGC 1 cut(s) 683
HinP1I GCGC 1 cut(s) 683
HincII GTYRAC 1 cut(s) 391
HindII GTYRAC 1 cut(s) 391
HindIII AAGCTT 2 cut(s) 819, 909
HinfI GANTC 4 cut(s) 201, 531, 617, 1064
HpaI GTTAAC 1 cut(s) 391
HpaII CCGG 3 cut(s) 159, 415, 694
HphI GGTGA 4 cut(s) 262, 469, 509, 604
Hpy166II GTNNAC 3 cut(s) 391, 799, 964
Hpy188I TCNGA 8 cut(s) 149, 451, 582, 622, 717, 1093, 1102, 1116
Hpy188III TCNNGA 5 cut(s) 302, 507, 659, 694, 723
Hpy8I GTNNAC 3 cut(s) 391, 799, 964
Hpy99I CGWCG 1 cut(s) 30
HpyAV CCTTC 2 cut(s) 559, 700
HpyCH4III ACNGT 2 cut(s) 274, 331
HpyCH4V TGCA 6 cut(s) 91, 248, 463, 938, 989, 1085
HpyF3I CTNAG 2 cut(s) 579, 619
Hsp92I GRCGYC 1 cut(s) 25
Hsp92II CATG 5 cut(s) 662, 817, 1004, 1009, 1071
HspAI GCGC 1 cut(s) 683
Kpn2I TCCGGA 1 cut(s) 693
KroI GCCGGC 1 cut(s) 158
KroNI GCCGGC 1 cut(s) 160
Ksp22I TGATCA 1 cut(s) 82
KspAI GTTAAC 1 cut(s) 391
Kzo9I GATC 6 cut(s) 82, 451, 640, 838, 883, 1040
LmnI GCTCC 1 cut(s) 417
Lsp1109I GCAGC 2 cut(s) 142, 922
LweI GCATC 4 cut(s) 455, 510, 819, 1094
MaeI CTAG 2 cut(s) 554, 644
MaeIII GTNAC 4 cut(s) 268, 325, 475, 867
MalI GATC 6 cut(s) 84, 453, 642, 840, 885, 1042
MboI GATC 6 cut(s) 82, 451, 640, 838, 883, 1040
MboII GAAGA 7 cut(s) 41, 64, 601, 932, 1069, 1080, 1135
MfeI CAATTG 2 cut(s) 86, 967
MhlI GDGCHC 1 cut(s) 114
MlsI TGGCCA 1 cut(s) 371
MluNI TGGCCA 1 cut(s) 371
MlyI GAGTC 1 cut(s) 611
MnlI CCTC 9 cut(s) 44, 50, 57, 241, 354, 562, 565, 723, 976
Mox20I TGGCCA 1 cut(s) 371
MroI TCCGGA 1 cut(s) 693
MroNI GCCGGC 1 cut(s) 158
MroXI GAANNNNTTC 1 cut(s) 1076
MscI TGGCCA 1 cut(s) 371
MseI TTAA 6 cut(s) 213, 390, 434, 761, 1020, 1150
MslI CAYNNNNRTG 2 cut(s) 401, 468
Msp20I TGGCCA 1 cut(s) 371
MspI CCGG 3 cut(s) 159, 415, 694
MspR9I CCNGG 3 cut(s) 401, 415, 856
MunI CAATTG 2 cut(s) 86, 967
MvaI CCWGG 2 cut(s) 401, 856
MvnI CGCG 1 cut(s) 508
NaeI GCCGGC 1 cut(s) 160
NciI CCSGG 1 cut(s) 415
NdeII GATC 6 cut(s) 82, 451, 640, 838, 883, 1040
NgoMIV GCCGGC 1 cut(s) 158
NlaIII CATG 5 cut(s) 662, 817, 1004, 1009, 1071
NmuCI GTSAC 3 cut(s) 268, 475, 867
NruI TCGCGA 1 cut(s) 508
NspI RCATGY 1 cut(s) 1009
PaeI GCATGC 1 cut(s) 1009
PagI TCATGA 1 cut(s) 658
PdiI GCCGGC 1 cut(s) 160
PdmI GAANNNNTTC 1 cut(s) 1076
PfeI GAWTC 3 cut(s) 201, 531, 1064
PkrI GCNGC 2 cut(s) 157, 937
PleI GAGTC 1 cut(s) 611
PpsI GAGTC 1 cut(s) 611
Psp6I CCWGG 2 cut(s) 399, 854
PspEI GGTNACC 1 cut(s) 475
PspFI CCCAGC 1 cut(s) 442
PspGI CCWGG 2 cut(s) 399, 854
PspPI GGNCC 3 cut(s) 9, 149, 847
PstI CTGCAG 1 cut(s) 940
PstNI CAGNNNCTG 1 cut(s) 449
RruI TCGCGA 1 cut(s) 508
RsaI GTAC 4 cut(s) 745, 789, 812, 1142
RsaNI GTAC 4 cut(s) 744, 788, 811, 1141
RseI CAYNNNNRTG 2 cut(s) 401, 468
SaqAI TTAA 6 cut(s) 213, 390, 434, 761, 1020, 1150
SatI GCNGC 2 cut(s) 156, 936
Sau3AI GATC 6 cut(s) 82, 451, 640, 838, 883, 1040
Sau96I GGNCC 3 cut(s) 9, 149, 847
ScaI AGTACT 1 cut(s) 789
SchI GAGTC 1 cut(s) 611
ScrFI CCNGG 3 cut(s) 401, 415, 856
SduI GDGCHC 1 cut(s) 114
SfaNI GCATC 4 cut(s) 455, 510, 819, 1094
SfcI CTRYAG 1 cut(s) 936
SinI GGWCC 2 cut(s) 9, 149
SmiMI CAYNNNNRTG 2 cut(s) 401, 468
SphI GCATGC 1 cut(s) 1009
SsiI CCGC 1 cut(s) 930
SspI AATATT 2 cut(s) 382, 503
SspMI CTAG 2 cut(s) 554, 644
StyD4I CCNGG 3 cut(s) 399, 413, 854
StyI CCWWGG 4 cut(s) 163, 196, 586, 1011
TaaI ACNGT 2 cut(s) 274, 331
TaqI TCGA 1 cut(s) 1062
TatI WGTACW 1 cut(s) 787
TfiI GAWTC 3 cut(s) 201, 531, 1064
Tru1I TTAA 6 cut(s) 213, 390, 434, 761, 1020, 1150
Tru9I TTAA 6 cut(s) 213, 390, 434, 761, 1020, 1150
TscAI CASTG 3 cut(s) 244, 945, 1087
TseFI GTSAC 3 cut(s) 268, 475, 867
TseI GCWGC 2 cut(s) 155, 935
Tsp45I GTSAC 3 cut(s) 268, 475, 867
TspDTI ATGAA 8 cut(s) 385, 587, 647, 665, 830, 904, 989, 1019
TspGWI ACGGA 3 cut(s) 67, 287, 841
TspRI CASTG 3 cut(s) 244, 945, 1087
VpaK11BI GGWCC 2 cut(s) 9, 149
XapI RAATTY 4 cut(s) 128, 670, 718, 893
XceI RCATGY 1 cut(s) 1009
XmiI GTMKAC 1 cut(s) 963
XmnI GAANNNNTTC 1 cut(s) 1076
XspI CTAG 2 cut(s) 554, 644
ZrmI AGTACT 1 cut(s) 789
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.