Rw3G029360

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0015348
Physical Location & Seq
Reverse (-)
45221237 .. 45224339
3103 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G029360.1

Sequence Viewer

Length: 1155 bp
ATGAGGACCATAAGTGGATGGCGTCGCTTCCTCATCCTCGTCCCTCTTCTTTTCTTTCTTGCTCACTTCTTCTCCGTTGATCAATTGCATTACAACCCACGACCTGTGCCCAACAAACAAAGCAAATTCAAATCCAACCACTTGGTTCTCGGACCTGCTGCCGGCCAAGGCTTGACCAATCGTCTCCAATGCCAACCCCAAGGAGTCAAAGCTCTTAACAAAACCCATTTCTCCTCTGCCACTGCCCCTGCACTTGATAACATTCACTTTGTCACCGTCTTTACCCTATATAATTCCACCCGTCCCGATGATCAGTTATCAAACTTGGTTACAGTTGGCAATGCTTCTTACACTAAATTGGAGAGGTCTATGGCCATTCTCAATATTTTCGTTAACTTCATCCAGGTGGCAATGCCCCGGAGCGATGTTGTGATTTTAACTGACCCAGCATCTGATCTTTCAATGCACAGAAATGGGGTCACCATTTATCCAATTCAAGGTGAATATTCGCGAGACAAGTTGATGCTTCAAAGAATCAGGTCTTACATTGCCTTCCTAGAAACAAGGATGGAGGAGGTTTCTCAGAACCAAGGTCATATTCATCATTACATCTTCACCGACTCAGATATAGCTGTGGTTGATGATCTAGGACATATATTTCATGATTATCCAAATTTTCATCTGGCGCTGACCTTCCGGAACAACAAAGAACAACCTCTGAATTCAGGATTTATAGCAGTCAGGGGTACTCCTGCTGGCATTTTAAGGGCAAAGACTTTTCTACAAGAAGTACTGAAAGTTTACAGGTCAAGGTACATGAAAGCTTCACGGATGCTTGGGGATCAGTTGGCCCTTGCCTGGGTGGTCAAGTCACACCCATCTTTTGATCCAAAGAAATTCACTAAAGCCCAAGCTTTCATAGAAGATATCGGCGGTGCTGCAGTGTTATTTTTACCCTGTGCTGTATACAATTGGACACCACCAGAGGGTGCAGGTCAATTTCATGGCATGCCCTTGGATGTTAAGGTCATTCATTTCAAAGGATCAAGGAAACGACTAATGCTCGAATCATGGAACTTCTTCAGTGCATCTTCTGACATTTCAGATATGTTGTGTCTGATATTGAAGAGTGGGAGAACGAAGTACGATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

384

Amino Acids

43.54

Weight (kDa)

9.56

Isoelectric Point (pI)

46.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45320
fragaria_vesca FvH4_1g28100 FvH4_1g28100
malus_domestica MD00G1094900.v1.1
prunus_persica Prupe.6G155400_v2.0.a1
pyrus_communis pycom5153684g00430
rosa_chinensis RchiOBHm_Chr3g0497141
rosa_laevigata RLG00000022478
rosa_multiflora Rmu_sc0002893.1_g000029
rosa_roxburghii Rroxscaffold_6G00388380
rosa_rugosa Rorug03G0291300
rosa_samantha Rh3AG334600 Rh3BG371700 Rh3CG368400 Rh3DG369400
rosa_wichuraiana Rw3G029360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 163, 983
AccI GTMKAC 1 cut(s) 966
AccII CGCG 1 cut(s) 511
AccIII TCCGGA 1 cut(s) 696
AciI CCGC 1 cut(s) 933
AclWI GGATC 3 cut(s) 849, 881, 1051
AcoI YGGCCR 2 cut(s) 163, 372
AcsI RAATTY 4 cut(s) 125, 673, 721, 896
AcuI CTGAAG 1 cut(s) 1066
AcyI GRCGYC 1 cut(s) 22
AfaI GTAC 4 cut(s) 748, 792, 815, 1145
AfiI CCNNNNNNNGG 5 cut(s) 161, 497, 858, 859, 986
AgsI TTSAA 6 cut(s) 130, 462, 497, 530, 1039, 1126
AhdI GACNNNNNGTC 1 cut(s) 180
AjnI CCWGG 2 cut(s) 402, 857
AjuI GAANNNNNNNTTGG 2 cut(s) 582, 614
AluBI AGCT 4 cut(s) 212, 632, 824, 914
AluI AGCT 4 cut(s) 212, 632, 824, 914
Alw26I GTCTC 2 cut(s) 188, 507
AlwI GGATC 3 cut(s) 849, 881, 1051
AlwNI CAGNNNCTG 1 cut(s) 452
Aor13HI TCCGGA 1 cut(s) 696
AoxI GGCC 3 cut(s) 163, 372, 849
ApeKI GCWGC 2 cut(s) 158, 938
ApoI RAATTY 4 cut(s) 125, 673, 721, 896
Asp700I GAANNNNTTC 1 cut(s) 1079
AspLEI GCGC 1 cut(s) 688
AspS9I GGNCC 3 cut(s) 6, 152, 850
AsuC2I CCSGG 1 cut(s) 418
AsuHPI GGTGA 4 cut(s) 265, 472, 512, 607
AvaII GGWCC 2 cut(s) 6, 152
BaeGI GKGCMC 1 cut(s) 111
BalI TGGCCA 1 cut(s) 374
BbvI GCAGC 2 cut(s) 145, 925
BccI CCATC 3 cut(s) 12, 562, 886
BciT130I CCWGG 2 cut(s) 404, 859
BclI TGATCA 2 cut(s) 79, 310
BcnI CCSGG 1 cut(s) 418
BcoDI GTCTC 2 cut(s) 188, 507
BfaI CTAG 2 cut(s) 557, 647
BfmI CTRYAG 1 cut(s) 939
BfoI RGCGCY 1 cut(s) 689
BfuAI ACCTGC 2 cut(s) 163, 983
BisI GCNGC 2 cut(s) 159, 939
BlsI GCNGC 2 cut(s) 160, 940
BmcAI AGTACT 1 cut(s) 792
Bme1390I CCNGG 3 cut(s) 404, 418, 859
Bme18I GGWCC 2 cut(s) 6, 152
BmeRI GACNNNNNGTC 1 cut(s) 180
BmgT120I GGNCC 3 cut(s) 6, 152, 850
BmrFI CCNGG 3 cut(s) 404, 418, 859
BmsI GCATC 4 cut(s) 458, 513, 822, 1097
BpuMI CCSGG 1 cut(s) 418
BsaHI GRCGYC 1 cut(s) 22
BsaJI CCNNGG 6 cut(s) 166, 199, 416, 589, 858, 1014
BsaWI WCCGGW 1 cut(s) 696
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bsc4I CCNNNNNNNGG 5 cut(s) 161, 497, 858, 859, 986
Bse118I RCCGGY 1 cut(s) 161
Bse3DI GCAATG 3 cut(s) 346, 417, 546
BseAI TCCGGA 1 cut(s) 696
BseBI CCWGG 2 cut(s) 404, 859
BseDI CCNNGG 6 cut(s) 166, 199, 416, 589, 858, 1014
BseGI GGATG 6 cut(s) 23, 33, 399, 573, 837, 1024
BseLI CCNNNNNNNGG 5 cut(s) 161, 497, 858, 859, 986
BseMI GCAATG 3 cut(s) 346, 417, 546
BseMII CTCAG 2 cut(s) 596, 636
BseRI GAGGAG 2 cut(s) 223, 587
BseSI GKGCMC 1 cut(s) 111
BseXI GCAGC 2 cut(s) 145, 925
BseYI CCCAGC 1 cut(s) 445
BsgI GTGCAG 2 cut(s) 234, 1011
Bsh1236I CGCG 1 cut(s) 511
BshFI GGCC 3 cut(s) 165, 374, 851
BsiSI CCGG 3 cut(s) 162, 418, 697
BslFI GGGAC 2 cut(s) 26, 288
BslI CCNNNNNNNGG 5 cut(s) 161, 497, 858, 859, 986
BsmAI GTCTC 2 cut(s) 188, 507
BsmBI CGTCTC 1 cut(s) 188
BsmFI GGGAC 2 cut(s) 26, 288
BsnI GGCC 3 cut(s) 165, 374, 851
Bsp1286I GDGCHC 1 cut(s) 111
Bsp13I TCCGGA 1 cut(s) 696
Bsp143I GATC 7 cut(s) 79, 310, 454, 643, 841, 886, 1043
Bsp68I TCGCGA 1 cut(s) 511
BspACI CCGC 1 cut(s) 933
BspANI GGCC 3 cut(s) 165, 374, 851
BspCNI CTCAG 2 cut(s) 595, 635
BspEI TCCGGA 1 cut(s) 696
BspFNI CGCG 1 cut(s) 511
BspHI TCATGA 1 cut(s) 661
BspMAI CTGCAG 1 cut(s) 943
BspMI ACCTGC 2 cut(s) 163, 983
BspPI GGATC 3 cut(s) 849, 881, 1051
BsrDI GCAATG 3 cut(s) 346, 417, 546
BsrFI RCCGGY 1 cut(s) 161
BssAI RCCGGY 1 cut(s) 161
BssECI CCNNGG 6 cut(s) 166, 199, 416, 589, 858, 1014
BssMI GATC 7 cut(s) 79, 310, 454, 643, 841, 886, 1043
BssNAI GTATAC 1 cut(s) 967
BssNI GRCGYC 1 cut(s) 22
BssT1I CCWWGG 4 cut(s) 166, 199, 589, 1014
Bst1107I GTATAC 1 cut(s) 967
Bst2UI CCWGG 2 cut(s) 404, 859
Bst4CI ACNGT 2 cut(s) 277, 334
Bst6I CTCTTC 2 cut(s) 51, 1121
BstACI GRCGYC 1 cut(s) 22
BstC8I GCNNGC 3 cut(s) 163, 757, 1010
BstDEI CTNAG 2 cut(s) 582, 622
BstEII GGTNACC 1 cut(s) 478
BstF5I GGATG 6 cut(s) 23, 33, 399, 573, 837, 1024
BstFNI CGCG 1 cut(s) 511
BstH2I RGCGCY 1 cut(s) 689
BstHHI GCGC 1 cut(s) 688
BstKTI GATC 7 cut(s) 82, 313, 457, 646, 844, 889, 1046
BstMAI GTCTC 2 cut(s) 188, 507
BstMBI GATC 7 cut(s) 79, 310, 454, 643, 841, 886, 1043
BstNI CCWGG 2 cut(s) 404, 859
BstNSI RCATGY 1 cut(s) 1012
BstPI GGTNACC 1 cut(s) 478
BstSCI CCNGG 3 cut(s) 402, 416, 857
BstSFI CTRYAG 1 cut(s) 939
BstSLI GKGCMC 1 cut(s) 111
BstUI CGCG 1 cut(s) 511
BstV1I GCAGC 2 cut(s) 145, 925
BstXI CCANNNNNNTGG 1 cut(s) 142
BstZ17I GTATAC 1 cut(s) 967
BsuRI GGCC 3 cut(s) 165, 374, 851
BtgZI GCGATG 1 cut(s) 438
BtsCI GGATG 6 cut(s) 23, 33, 399, 573, 837, 1024
BtsI GCAGTG 2 cut(s) 240, 948
BtsIMutI CAGTG 3 cut(s) 240, 948, 1090
BtuMI TCGCGA 1 cut(s) 511
BveI ACCTGC 2 cut(s) 163, 983
Cac8I GCNNGC 3 cut(s) 163, 757, 1010
CaiI CAGNNNCTG 1 cut(s) 452
CciI TCATGA 1 cut(s) 661
CfoI GCGC 1 cut(s) 688
Cfr10I RCCGGY 1 cut(s) 161
Cfr13I GGNCC 3 cut(s) 6, 152, 850
CseI GACGC 1 cut(s) 11
Csp6I GTAC 4 cut(s) 747, 791, 814, 1144
CviAII CATG 5 cut(s) 662, 817, 1004, 1009, 1071
CviJI RGCY 9 cut(s) 165, 171, 212, 374, 632, 824, 851, 908, 914
CviKI_1 RGCY 9 cut(s) 165, 171, 212, 374, 632, 824, 851, 908, 914
CviQI GTAC 4 cut(s) 747, 791, 814, 1144
DdeI CTNAG 2 cut(s) 582, 622
DpnI GATC 7 cut(s) 81, 312, 456, 645, 843, 888, 1045
DpnII GATC 7 cut(s) 79, 310, 454, 643, 841, 886, 1043
DriI GACNNNNNGTC 1 cut(s) 180
EaeI YGGCCR 2 cut(s) 163, 372
Eam1104I CTCTTC 2 cut(s) 51, 1121
Eam1105I GACNNNNNGTC 1 cut(s) 180
EarI CTCTTC 2 cut(s) 51, 1121
Eco130I CCWWGG 4 cut(s) 166, 199, 589, 1014
Eco32I GATATC 1 cut(s) 928
Eco47I GGWCC 2 cut(s) 6, 152
Eco57I CTGAAG 1 cut(s) 1066
Eco91I GGTNACC 1 cut(s) 478
EcoO65I GGTNACC 1 cut(s) 478
EcoRI GAATTC 1 cut(s) 721
EcoRII CCWGG 2 cut(s) 402, 857
EcoRV GATATC 1 cut(s) 928
EcoT14I CCWWGG 4 cut(s) 166, 199, 589, 1014
ErhI CCWWGG 4 cut(s) 166, 199, 589, 1014
Esp3I CGTCTC 1 cut(s) 188
FaeI CATG 5 cut(s) 665, 820, 1007, 1012, 1074
FaqI GGGAC 2 cut(s) 26, 288
FatI CATG 5 cut(s) 661, 816, 1003, 1008, 1070
FbaI TGATCA 2 cut(s) 79, 310
FblI GTMKAC 1 cut(s) 966
Fnu4HI GCNGC 2 cut(s) 159, 939
FokI GGATG 6 cut(s) 20, 30, 386, 580, 844, 1031
Fsp4HI GCNGC 2 cut(s) 159, 939
FspBI CTAG 2 cut(s) 557, 647
GlaI GCGC 1 cut(s) 687
GluI GCNGC 2 cut(s) 159, 939
GsaI CCCAGC 1 cut(s) 449
HaeII RGCGCY 1 cut(s) 689
HaeIII GGCC 3 cut(s) 165, 374, 851
HapII CCGG 3 cut(s) 162, 418, 697
HgaI GACGC 1 cut(s) 11
HhaI GCGC 1 cut(s) 688
Hin1I GRCGYC 1 cut(s) 22
Hin1II CATG 5 cut(s) 665, 820, 1007, 1012, 1074
Hin6I GCGC 1 cut(s) 686
HinP1I GCGC 1 cut(s) 686
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HindIII AAGCTT 2 cut(s) 822, 912
HinfI GANTC 4 cut(s) 204, 534, 620, 1067
HpaI GTTAAC 1 cut(s) 394
HpaII CCGG 3 cut(s) 162, 418, 697
HphI GGTGA 4 cut(s) 265, 472, 512, 607
Hpy166II GTNNAC 3 cut(s) 394, 802, 967
Hpy188I TCNGA 8 cut(s) 152, 454, 585, 625, 720, 1096, 1105, 1119
Hpy188III TCNNGA 5 cut(s) 305, 510, 662, 697, 726
Hpy8I GTNNAC 3 cut(s) 394, 802, 967
Hpy99I CGWCG 1 cut(s) 27
HpyAV CCTTC 2 cut(s) 562, 703
HpyCH4III ACNGT 2 cut(s) 277, 334
HpyCH4V TGCA 6 cut(s) 88, 251, 466, 941, 992, 1088
HpyF3I CTNAG 2 cut(s) 582, 622
Hsp92I GRCGYC 1 cut(s) 22
Hsp92II CATG 5 cut(s) 665, 820, 1007, 1012, 1074
HspAI GCGC 1 cut(s) 686
Kpn2I TCCGGA 1 cut(s) 696
KroI GCCGGC 1 cut(s) 161
KroNI GCCGGC 1 cut(s) 163
Ksp22I TGATCA 2 cut(s) 79, 310
KspAI GTTAAC 1 cut(s) 394
Kzo9I GATC 7 cut(s) 79, 310, 454, 643, 841, 886, 1043
LmnI GCTCC 1 cut(s) 420
Lsp1109I GCAGC 2 cut(s) 145, 925
LweI GCATC 4 cut(s) 458, 513, 822, 1097
MaeI CTAG 2 cut(s) 557, 647
MaeIII GTNAC 4 cut(s) 271, 328, 478, 870
MalI GATC 7 cut(s) 81, 312, 456, 645, 843, 888, 1045
MboI GATC 7 cut(s) 79, 310, 454, 643, 841, 886, 1043
MboII GAAGA 7 cut(s) 38, 61, 604, 935, 1072, 1083, 1138
MfeI CAATTG 2 cut(s) 83, 970
MhlI GDGCHC 1 cut(s) 111
MlsI TGGCCA 1 cut(s) 374
MluNI TGGCCA 1 cut(s) 374
MlyI GAGTC 2 cut(s) 213, 614
MmeI TCCRAC 1 cut(s) 159
MnlI CCTC 9 cut(s) 41, 47, 54, 244, 357, 565, 568, 726, 979
Mox20I TGGCCA 1 cut(s) 374
MroI TCCGGA 1 cut(s) 696
MroNI GCCGGC 1 cut(s) 161
MroXI GAANNNNTTC 1 cut(s) 1079
MscI TGGCCA 1 cut(s) 374
MseI TTAA 6 cut(s) 216, 393, 437, 764, 1023, 1153
MslI CAYNNNNRTG 2 cut(s) 404, 471
Msp20I TGGCCA 1 cut(s) 374
MspI CCGG 3 cut(s) 162, 418, 697
MspR9I CCNGG 3 cut(s) 404, 418, 859
MunI CAATTG 2 cut(s) 83, 970
MvaI CCWGG 2 cut(s) 404, 859
MvnI CGCG 1 cut(s) 511
NaeI GCCGGC 1 cut(s) 163
NciI CCSGG 1 cut(s) 418
NdeII GATC 7 cut(s) 79, 310, 454, 643, 841, 886, 1043
NgoMIV GCCGGC 1 cut(s) 161
NlaIII CATG 5 cut(s) 665, 820, 1007, 1012, 1074
NmuCI GTSAC 3 cut(s) 271, 478, 870
NruI TCGCGA 1 cut(s) 511
NspI RCATGY 1 cut(s) 1012
PaeI GCATGC 1 cut(s) 1012
PagI TCATGA 1 cut(s) 661
PdiI GCCGGC 1 cut(s) 163
PdmI GAANNNNTTC 1 cut(s) 1079
PfeI GAWTC 2 cut(s) 534, 1067
PkrI GCNGC 2 cut(s) 160, 940
PleI GAGTC 2 cut(s) 212, 614
PpsI GAGTC 2 cut(s) 212, 614
Psp6I CCWGG 2 cut(s) 402, 857
PspEI GGTNACC 1 cut(s) 478
PspFI CCCAGC 1 cut(s) 445
PspGI CCWGG 2 cut(s) 402, 857
PspPI GGNCC 3 cut(s) 6, 152, 850
PstI CTGCAG 1 cut(s) 943
PstNI CAGNNNCTG 1 cut(s) 452
RruI TCGCGA 1 cut(s) 511
RsaI GTAC 4 cut(s) 748, 792, 815, 1145
RsaNI GTAC 4 cut(s) 747, 791, 814, 1144
RseI CAYNNNNRTG 2 cut(s) 404, 471
SaqAI TTAA 6 cut(s) 216, 393, 437, 764, 1023, 1153
SatI GCNGC 2 cut(s) 159, 939
Sau3AI GATC 7 cut(s) 79, 310, 454, 643, 841, 886, 1043
Sau96I GGNCC 3 cut(s) 6, 152, 850
ScaI AGTACT 1 cut(s) 792
SchI GAGTC 2 cut(s) 213, 614
ScrFI CCNGG 3 cut(s) 404, 418, 859
SduI GDGCHC 1 cut(s) 111
SfaNI GCATC 4 cut(s) 458, 513, 822, 1097
SfcI CTRYAG 1 cut(s) 939
SinI GGWCC 2 cut(s) 6, 152
SmiMI CAYNNNNRTG 2 cut(s) 404, 471
SphI GCATGC 1 cut(s) 1012
SsiI CCGC 1 cut(s) 933
SspI AATATT 2 cut(s) 385, 506
SspMI CTAG 2 cut(s) 557, 647
StyD4I CCNGG 3 cut(s) 402, 416, 857
StyI CCWWGG 4 cut(s) 166, 199, 589, 1014
TaaI ACNGT 2 cut(s) 277, 334
TaqI TCGA 1 cut(s) 1065
TatI WGTACW 1 cut(s) 790
TfiI GAWTC 2 cut(s) 534, 1067
Tru1I TTAA 6 cut(s) 216, 393, 437, 764, 1023, 1153
Tru9I TTAA 6 cut(s) 216, 393, 437, 764, 1023, 1153
TscAI CASTG 3 cut(s) 247, 948, 1090
TseFI GTSAC 3 cut(s) 271, 478, 870
TseI GCWGC 2 cut(s) 158, 938
Tsp45I GTSAC 3 cut(s) 271, 478, 870
TspDTI ATGAA 8 cut(s) 388, 590, 650, 668, 833, 907, 992, 1022
TspGWI ACGGA 2 cut(s) 64, 844
TspRI CASTG 3 cut(s) 247, 948, 1090
VpaK11BI GGWCC 2 cut(s) 6, 152
XapI RAATTY 4 cut(s) 125, 673, 721, 896
XceI RCATGY 1 cut(s) 1012
XmiI GTMKAC 1 cut(s) 966
XmnI GAANNNNTTC 1 cut(s) 1079
XspI CTAG 2 cut(s) 557, 647
ZrmI AGTACT 1 cut(s) 792
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.