Prupe.6G155400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0015348
Physical Location & Seq
Reverse (-)
13573957 .. 13577143
3187 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G155400.1

Sequence Viewer

Length: 1170 bp
ATGAGAGTGTGCAGCGGATGGCGTCGTTTCCTCATCTTTCTCCCTCTTATTTTCATTCTTCCTCACTTCTTCTCCGTCAAGCAATTGCATTATAACTCTAATGTGGAAGATTTGCCCAAGAAGAAACAAGGCAACAAATCCAATCACTTGGTTCTTGGACCTGCTGCTGGTCAAGGCTTGAGAAATCGCCTCCAATGCCAAGGCATCAAAGCTCTCAACCAAACCCATTCTTCAGCCTCTTCCCATGTGTCCAGTGGGGTTGATGACATTGCCTTTGTCACTGTCTTCACCATATACAACTCCACTGTTAATGGGCGCGCCGACGATCAATTGTCACACTTGGTAACCGTTGGGAATGCTTCTTATACTAAAGTGGAGAGGTCAATGGCCATCTTGAATGTCTTCATTAACTTCATTCAGGTATCAATGCCCCGGAGCAATGTAGTCATTCTAACTGACCCAGAATCTGATCTTTCAATGCACAGAAATGGGGTCACTGTACATCCAATTCAAGGTGAATATTCACGTGACCAGTTGATGCTTCAAAGAATCAGGTCATACATTACCTTCCTAGAAACAAAGCTGGAGGAGCTTTCTCAGAAGCAGGGGCATAATCATCATTATATATTCACTGACTCGGATATAGCTGTGGTTGATGATCTAGGATACATTTTTCGTGAGTACCCGAATTTTCATCTGGCACTCACATTCCGAAACAACAAAGCTCAACCTCTGAATTCAGGATTTATAGCAGTGAGGGGTACTTCAGATGGCATTTTAAGGGCGAAGATTTTTCTACAAGAAGTACTAAAAGTTTATGGATCAAGGTACATGGGAGCTTCTAGAATGCTTGGGGATCAGCTAGCTCTTGCCTGGGTGGTGAAGTCACACCCATCTTTTGATGCAAAGAAATTTACCAAAGCCCTAGCTTTCATAGAGGATATTGGCGATGCTTCAGTGTTGTTTTTACCCTGTGCTTTATACAATTGGACACCACCAGAGGGCGCAGGTCAATTTCATGGCATGCCCTTGGATGTTAAGGTTGTTCATTTCAAAGGATCAAGGAAACGCCTGATGCTCGAGTCTTGGAACTTCTACAATTCCTATTCTGACATTTCAGATATGTTGTGCCTGATACTAAAGAGTGGGAGAACAAAGTACGATTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

390

Amino Acids

44.01

Weight (kDa)

9.26

Isoelectric Point (pI)

38.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45320
fragaria_vesca FvH4_1g28100 FvH4_1g28100
malus_domestica MD00G1094900.v1.1
prunus_persica Prupe.6G155400_v2.0.a1
pyrus_communis pycom5153684g00430
rosa_chinensis RchiOBHm_Chr3g0497141
rosa_laevigata RLG00000022478
rosa_multiflora Rmu_sc0002893.1_g000029
rosa_roxburghii Rroxscaffold_6G00388380
rosa_rugosa Rorug03G0291300
rosa_samantha Rh3AG334600 Rh3BG371700 Rh3CG368400 Rh3DG369400
rosa_wichuraiana Rw3G029360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 93
Acc36I ACCTGC 2 cut(s) 169, 998
AccII CGCG 1 cut(s) 318
AciI CCGC 1 cut(s) 15
AclWI GGATC 3 cut(s) 829, 864, 1066
AcoI YGGCCR 1 cut(s) 387
AcsI RAATTY 3 cut(s) 688, 736, 911
AcuI CTGAAG 3 cut(s) 216, 750, 939
AcvI CACGTG 1 cut(s) 527
AcyI GRCGYC 1 cut(s) 22
AfaI GTAC 6 cut(s) 501, 683, 763, 807, 830, 1160
AfiI CCNNNNNNNGG 3 cut(s) 167, 512, 1001
AgsI TTSAA 5 cut(s) 397, 477, 512, 545, 1054
AjnI CCWGG 1 cut(s) 872
AluBI AGCT 9 cut(s) 212, 583, 592, 647, 725, 839, 862, 866, 929
AluI AGCT 9 cut(s) 212, 583, 592, 647, 725, 839, 862, 866, 929
AlwI GGATC 3 cut(s) 829, 864, 1066
AlwNI CAGNNNCTG 1 cut(s) 467
Ama87I CYCGRG 1 cut(s) 1079
AoxI GGCC 1 cut(s) 387
ApeKI GCWGC 2 cut(s) 12, 164
ApoI RAATTY 3 cut(s) 688, 736, 911
ArsI GACNNNNNNTTYG 2 cut(s) 257, 289
AscI GGCGCGCC 1 cut(s) 316
Asp700I GAANNNNTTC 1 cut(s) 401
AspLEI GCGC 3 cut(s) 318, 320, 1007
AspS9I GGNCC 1 cut(s) 158
AsuC2I CCSGG 1 cut(s) 433
AsuHPI GGTGA 3 cut(s) 280, 527, 892
AsuNHI GCTAGC 1 cut(s) 862
AvaI CYCGRG 1 cut(s) 1079
AvaII GGWCC 1 cut(s) 158
BalI TGGCCA 1 cut(s) 389
BbrPI CACGTG 1 cut(s) 527
BbsI GAAGAC 2 cut(s) 277, 394
BbvI GCAGC 2 cut(s) 24, 151
BccI CCATC 4 cut(s) 12, 398, 764, 901
BciT130I CCWGG 1 cut(s) 874
BciVI GTATCC 1 cut(s) 659
BcnI CCSGG 1 cut(s) 433
BfaI CTAG 5 cut(s) 572, 662, 843, 863, 926
BfuAI ACCTGC 2 cut(s) 169, 998
BfuI GTATCC 1 cut(s) 659
BisI GCNGC 2 cut(s) 13, 165
BlsI GCNGC 2 cut(s) 14, 166
BmcAI AGTACT 1 cut(s) 807
Bme1390I CCNGG 2 cut(s) 433, 874
Bme18I GGWCC 1 cut(s) 158
BmeT110I CYCGRG 1 cut(s) 1079
BmgT120I GGNCC 1 cut(s) 158
BmrFI CCNGG 2 cut(s) 433, 874
BmsI GCATC 5 cut(s) 213, 528, 892, 940, 1065
BmtI GCTAGC 1 cut(s) 866
BpiI GAAGAC 2 cut(s) 277, 394
BpmI CTGGAG 1 cut(s) 605
BpuEI CTTGAG 1 cut(s) 199
BpuMI CCSGG 1 cut(s) 433
BsaAI YACGTR 1 cut(s) 527
BsaHI GRCGYC 1 cut(s) 22
BsaJI CCNNGG 4 cut(s) 199, 431, 873, 1029
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bsc4I CCNNNNNNNGG 3 cut(s) 167, 512, 1001
Bse1I ACTGG 2 cut(s) 252, 532
Bse3DI GCAATG 2 cut(s) 267, 445
BseBI CCWGG 1 cut(s) 874
BseDI CCNNGG 4 cut(s) 199, 431, 873, 1029
BseGI GGATG 3 cut(s) 23, 502, 1039
BseLI CCNNNNNNNGG 3 cut(s) 167, 512, 1001
BseMI GCAATG 2 cut(s) 267, 445
BseMII CTCAG 1 cut(s) 611
BseNI ACTGG 2 cut(s) 252, 532
BsePI GCGCGC 1 cut(s) 316
BseRI GAGGAG 1 cut(s) 602
BseXI GCAGC 2 cut(s) 24, 151
BsgI GTGCAG 1 cut(s) 31
Bsh1236I CGCG 1 cut(s) 318
BshFI GGCC 1 cut(s) 389
BsiHKCI CYCGRG 1 cut(s) 1079
BsiSI CCGG 1 cut(s) 433
BslI CCNNNNNNNGG 3 cut(s) 167, 512, 1001
BsmI GAATGC 2 cut(s) 361, 852
BsnI GGCC 1 cut(s) 389
BsoBI CYCGRG 1 cut(s) 1079
Bsp1407I TGTACA 1 cut(s) 499
Bsp143I GATC 6 cut(s) 325, 469, 658, 821, 856, 1058
BspACI CCGC 1 cut(s) 15
BspANI GGCC 1 cut(s) 389
BspCNI CTCAG 1 cut(s) 610
BspFNI CGCG 1 cut(s) 318
BspMI ACCTGC 2 cut(s) 169, 998
BspOI GCTAGC 1 cut(s) 866
BspPI GGATC 3 cut(s) 829, 864, 1066
BsrDI GCAATG 2 cut(s) 267, 445
BsrGI TGTACA 1 cut(s) 499
BsrI ACTGG 2 cut(s) 252, 532
BssECI CCNNGG 4 cut(s) 199, 431, 873, 1029
BssHII GCGCGC 1 cut(s) 316
BssMI GATC 6 cut(s) 325, 469, 658, 821, 856, 1058
BssNI GRCGYC 1 cut(s) 22
BssT1I CCWWGG 2 cut(s) 199, 1029
Bst2UI CCWGG 1 cut(s) 874
Bst4CI ACNGT 4 cut(s) 283, 307, 349, 499
Bst6I CTCTTC 1 cut(s) 244
BstACI GRCGYC 1 cut(s) 22
BstAUI TGTACA 1 cut(s) 499
BstBAI YACGTR 1 cut(s) 527
BstC8I GCNNGC 3 cut(s) 318, 864, 1025
BstDEI CTNAG 1 cut(s) 597
BstEII GGTNACC 1 cut(s) 343
BstF5I GGATG 3 cut(s) 23, 502, 1039
BstFNI CGCG 1 cut(s) 318
BstHHI GCGC 3 cut(s) 318, 320, 1007
BstKTI GATC 6 cut(s) 328, 472, 661, 824, 859, 1061
BstMBI GATC 6 cut(s) 325, 469, 658, 821, 856, 1058
BstMWI GCNNNNNNNGC 2 cut(s) 195, 589
BstNI CCWGG 1 cut(s) 874
BstNSI RCATGY 1 cut(s) 1027
BstPI GGTNACC 1 cut(s) 343
BstSCI CCNGG 2 cut(s) 431, 872
BstUI CGCG 1 cut(s) 318
BstV1I GCAGC 2 cut(s) 24, 151
BstV2I GAAGAC 2 cut(s) 277, 394
BstXI CCANNNNNNTGG 1 cut(s) 148
BsuI GTATCC 1 cut(s) 659
BsuRI GGCC 1 cut(s) 389
BtgZI GCGATG 1 cut(s) 963
BtsCI GGATG 3 cut(s) 23, 502, 1039
BtsI GCAGTG 1 cut(s) 759
BtsIMutI CAGTG 7 cut(s) 259, 279, 303, 495, 630, 759, 963
BveI ACCTGC 2 cut(s) 169, 998
Cac8I GCNNGC 3 cut(s) 318, 864, 1025
CaiI CAGNNNCTG 1 cut(s) 467
CfoI GCGC 3 cut(s) 318, 320, 1007
Cfr13I GGNCC 1 cut(s) 158
CseI GACGC 1 cut(s) 11
Csp6I GTAC 6 cut(s) 500, 682, 762, 806, 829, 1159
CviAII CATG 4 cut(s) 245, 832, 1019, 1024
CviQI GTAC 6 cut(s) 500, 682, 762, 806, 829, 1159
DdeI CTNAG 1 cut(s) 597
DpnI GATC 6 cut(s) 327, 471, 660, 823, 858, 1060
DpnII GATC 6 cut(s) 325, 469, 658, 821, 856, 1058
EaeI YGGCCR 1 cut(s) 387
Eam1104I CTCTTC 1 cut(s) 244
EarI CTCTTC 1 cut(s) 244
Eco130I CCWWGG 2 cut(s) 199, 1029
Eco47I GGWCC 1 cut(s) 158
Eco57I CTGAAG 3 cut(s) 216, 750, 939
Eco72I CACGTG 1 cut(s) 527
Eco88I CYCGRG 1 cut(s) 1079
Eco91I GGTNACC 1 cut(s) 343
EcoO65I GGTNACC 1 cut(s) 343
EcoRI GAATTC 1 cut(s) 736
EcoRII CCWGG 1 cut(s) 872
EcoT14I CCWWGG 2 cut(s) 199, 1029
ErhI CCWWGG 2 cut(s) 199, 1029
FaeI CATG 4 cut(s) 248, 835, 1022, 1027
FatI CATG 4 cut(s) 244, 831, 1018, 1023
Fnu4HI GCNGC 2 cut(s) 13, 165
FokI GGATG 3 cut(s) 30, 489, 1046
Fsp4HI GCNGC 2 cut(s) 13, 165
FspBI CTAG 5 cut(s) 572, 662, 843, 863, 926
GlaI GCGC 3 cut(s) 317, 319, 1006
GluI GCNGC 2 cut(s) 13, 165
GsuI CTGGAG 1 cut(s) 605
HaeIII GGCC 1 cut(s) 389
HapII CCGG 1 cut(s) 433
HgaI GACGC 1 cut(s) 11
HhaI GCGC 3 cut(s) 318, 320, 1007
Hin1I GRCGYC 1 cut(s) 22
Hin1II CATG 4 cut(s) 248, 835, 1022, 1027
Hin6I GCGC 3 cut(s) 316, 318, 1005
HinP1I GCGC 3 cut(s) 316, 318, 1005
HinfI GANTC 4 cut(s) 464, 549, 635, 1082
HpaII CCGG 1 cut(s) 433
HphI GGTGA 3 cut(s) 280, 527, 892
Hpy188I TCNGA 9 cut(s) 469, 600, 640, 713, 735, 769, 1111, 1120, 1169
Hpy188III TCNNGA 4 cut(s) 394, 677, 741, 843
Hpy99I CGWCG 2 cut(s) 27, 326
HpyAV CCTTC 1 cut(s) 577
HpyCH4III ACNGT 4 cut(s) 283, 307, 349, 499
HpyCH4IV ACGT 1 cut(s) 526
HpyCH4V TGCA 4 cut(s) 12, 88, 481, 905
HpyF10VI GCNNNNNNNGC 2 cut(s) 195, 589
HpyF3I CTNAG 1 cut(s) 597
HpySE526I ACGT 1 cut(s) 526
Hsp92I GRCGYC 1 cut(s) 22
Hsp92II CATG 4 cut(s) 248, 835, 1022, 1027
HspAI GCGC 3 cut(s) 316, 318, 1005
Kzo9I GATC 6 cut(s) 325, 469, 658, 821, 856, 1058
LmnI GCTCC 3 cut(s) 435, 589, 836
Lsp1109I GCAGC 2 cut(s) 24, 151
LweI GCATC 5 cut(s) 213, 528, 892, 940, 1065
MaeI CTAG 5 cut(s) 572, 662, 843, 863, 926
MaeII ACGT 1 cut(s) 526
MaeIII GTNAC 6 cut(s) 277, 333, 343, 493, 527, 885
MalI GATC 6 cut(s) 327, 471, 660, 823, 858, 1060
MboI GATC 6 cut(s) 325, 469, 658, 821, 856, 1058
MboII GAAGA 9 cut(s) 50, 61, 119, 133, 222, 231, 277, 394, 799
MfeI CAATTG 3 cut(s) 83, 329, 985
MlsI TGGCCA 1 cut(s) 389
MluCI AATT 9 cut(s) 83, 329, 507, 688, 736, 911, 985, 1013, 1099
MluNI TGGCCA 1 cut(s) 389
MlyI GAGTC 2 cut(s) 629, 1091
Mox20I TGGCCA 1 cut(s) 389
MroXI GAANNNNTTC 1 cut(s) 401
MscI TGGCCA 1 cut(s) 389
MseI TTAA 4 cut(s) 309, 408, 779, 1038
MslI CAYNNNNRTG 1 cut(s) 486
Msp20I TGGCCA 1 cut(s) 389
MspA1I CMGCKG 1 cut(s) 15
MspI CCGG 1 cut(s) 433
MspR9I CCNGG 2 cut(s) 433, 874
MunI CAATTG 3 cut(s) 83, 329, 985
Mva1269I GAATGC 2 cut(s) 361, 852
MvaI CCWGG 1 cut(s) 874
MvnI CGCG 1 cut(s) 318
MwoI GCNNNNNNNGC 2 cut(s) 195, 589
NciI CCSGG 1 cut(s) 433
NdeII GATC 6 cut(s) 325, 469, 658, 821, 856, 1058
NheI GCTAGC 1 cut(s) 862
NlaIII CATG 4 cut(s) 248, 835, 1022, 1027
NmuCI GTSAC 5 cut(s) 277, 333, 493, 527, 885
NspI RCATGY 1 cut(s) 1027
PaeI GCATGC 1 cut(s) 1027
PaeR7I CTCGAG 1 cut(s) 1079
PalAI GGCGCGCC 1 cut(s) 316
PauI GCGCGC 1 cut(s) 316
PctI GAATGC 2 cut(s) 361, 852
PdmI GAANNNNTTC 1 cut(s) 401
PfeI GAWTC 2 cut(s) 464, 549
PkrI GCNGC 2 cut(s) 14, 166
PleI GAGTC 2 cut(s) 629, 1090
PmaCI CACGTG 1 cut(s) 527
PmlI CACGTG 1 cut(s) 527
PpsI GAGTC 2 cut(s) 629, 1090
Ppu21I YACGTR 1 cut(s) 527
PsiI TTATAA 1 cut(s) 93
Psp6I CCWGG 1 cut(s) 872
PspCI CACGTG 1 cut(s) 527
PspEI GGTNACC 1 cut(s) 343
PspGI CCWGG 1 cut(s) 872
PspPI GGNCC 1 cut(s) 158
PspXI VCTCGAGB 1 cut(s) 1079
PstNI CAGNNNCTG 1 cut(s) 467
PteI GCGCGC 1 cut(s) 316
RsaI GTAC 6 cut(s) 501, 683, 763, 807, 830, 1160
RsaNI GTAC 6 cut(s) 500, 682, 762, 806, 829, 1159
RseI CAYNNNNRTG 1 cut(s) 486
SaqAI TTAA 4 cut(s) 309, 408, 779, 1038
SatI GCNGC 2 cut(s) 13, 165
Sau3AI GATC 6 cut(s) 325, 469, 658, 821, 856, 1058
Sau96I GGNCC 1 cut(s) 158
ScaI AGTACT 1 cut(s) 807
SchI GAGTC 2 cut(s) 629, 1091
ScrFI CCNGG 2 cut(s) 433, 874
SfaNI GCATC 5 cut(s) 213, 528, 892, 940, 1065
Sfr274I CTCGAG 1 cut(s) 1079
SgsI GGCGCGCC 1 cut(s) 316
SinI GGWCC 1 cut(s) 158
SlaI CTCGAG 1 cut(s) 1079
SmiMI CAYNNNNRTG 1 cut(s) 486
SmlI CTYRAG 2 cut(s) 178, 1079
SmoI CTYRAG 2 cut(s) 178, 1079
SphI GCATGC 1 cut(s) 1027
Sse9I AATT 9 cut(s) 83, 329, 507, 688, 736, 911, 985, 1013, 1099
SsiI CCGC 1 cut(s) 15
SspI AATATT 1 cut(s) 521
SspMI CTAG 5 cut(s) 572, 662, 843, 863, 926
StyD4I CCNGG 2 cut(s) 431, 872
StyI CCWWGG 2 cut(s) 199, 1029
TaaI ACNGT 4 cut(s) 283, 307, 349, 499
TaiI ACGT 1 cut(s) 529
TaqI TCGA 1 cut(s) 1080
TasI AATT 9 cut(s) 83, 329, 507, 688, 736, 911, 985, 1013, 1099
TatI WGTACW 2 cut(s) 499, 805
TfiI GAWTC 2 cut(s) 464, 549
Tru1I TTAA 4 cut(s) 309, 408, 779, 1038
Tru9I TTAA 4 cut(s) 309, 408, 779, 1038
TscAI CASTG 7 cut(s) 259, 286, 310, 502, 637, 759, 963
TseFI GTSAC 5 cut(s) 277, 333, 493, 527, 885
TseI GCWGC 2 cut(s) 12, 164
Tsp45I GTSAC 5 cut(s) 277, 333, 493, 527, 885
TspDTI ATGAA 7 cut(s) 43, 394, 403, 683, 922, 1007, 1037
TspGWI ACGGA 1 cut(s) 64
TspRI CASTG 7 cut(s) 259, 286, 310, 502, 637, 759, 963
VpaK11BI GGWCC 1 cut(s) 158
XapI RAATTY 3 cut(s) 688, 736, 911
XbaI TCTAGA 1 cut(s) 842
XceI RCATGY 1 cut(s) 1027
XcmI CCANNNNNNNNNTGG 1 cut(s) 251
XhoI CTCGAG 1 cut(s) 1079
XmnI GAANNNNTTC 1 cut(s) 401
XspI CTAG 5 cut(s) 572, 662, 843, 863, 926
ZrmI AGTACT 1 cut(s) 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.