Rh3DG369400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0015348
Physical Location & Seq
Reverse (-)
46776827 .. 46780547
3721 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG369400.1

Sequence Viewer

Length: 1041 bp
ATGATGAGGACCATACGTGGATGGCGTCGCTTCCTCATCCTCGTCCCTCTTCTTTTCTTTCTTGCTCACTTCTTCTCCGGTAATCCCCACCTTTCTTTCTCTCTTTCTTTCTTGCTCTCTCTGTCTGTTCATCTTTTCTTTTTGTTTTCAGTTGATCAATTGCATTACAACCCACGACCTGTGCCCAACAAACAAAGCAAATTCAAATTCAACCACTTGGTTCTCGGACCTGCTGCCGGCCAAGGCTTGACCAATCGTCTCCAATGCCAACCCCAAGGAATCAAAGCTCTTAACAAAACCCATTTCTCCTCTGCCACTGCCCCTGCACTTGATAACATTCACTTTGTCACCGTCTTTACCCTATATAATTCCACCCGTCCCGATGATCAGTTATCAAACTTGGTTACAGTTGGCAATGCTTCTTACACTAAATTGGAGAGGTCTATGGCCATTCTCAATATTTTCGTTAACTTCATCCAGGTGGCAATGCCCCGGAGCGATGTAGTGATTTTAACTGACCCAGCATCTGATCTTTCAATGCACAGAAATGGGGTCACCATTTATCCAATTCAAGGTGAATATTCGCGAGACAAGTTGATGCTTCAAAGAATCAGGTCTTACATTGCCTTCCTAGAAACAAGGATGGAGGAGGTTTCTCAGAACCAAGGTCATATTCATCATTACATCTTCACCGACTCAGATATAGCTGTGGTTGATGATCTAGGACATATATTTCATGATTATCCAAATTTTCATCTGGCGCTGACCTTCCGGAACAACAAAGAACAACCTCTGAATTCAGGATTTATAGCAGTCAGGGGTACTCCTGCTGGCATTTTAAGGTGCGTCTGTCACATTATCTGGTTTTCTTTTTCATGTATGCTCGGCTGGGTTGCAAGTTGCAACAGAACAGATACAGAGAAAGTTTATCTGATATCCGATAGTAAAGGTAAGATGAAAAAAATATATATATACAAAGAAAAAATAAATTGTGGAGTCAAGTTCAAGATGTTTTTTGTTTTGTTTTTGTCATCTGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

346

Amino Acids

39.6

Weight (kDa)

9.48

Isoelectric Point (pI)

44.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45320
fragaria_vesca FvH4_1g28100 FvH4_1g28100
malus_domestica MD00G1094900.v1.1
prunus_persica Prupe.6G155400_v2.0.a1
pyrus_communis pycom5153684g00430
rosa_chinensis RchiOBHm_Chr3g0497141
rosa_laevigata RLG00000022478
rosa_multiflora Rmu_sc0002893.1_g000029
rosa_roxburghii Rroxscaffold_6G00388380
rosa_rugosa Rorug03G0291300
rosa_samantha Rh3AG334600 Rh3BG371700 Rh3CG368400 Rh3DG369400
rosa_wichuraiana Rw3G029360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 238
AccII CGCG 1 cut(s) 586
AccIII TCCGGA 1 cut(s) 771
AcoI YGGCCR 2 cut(s) 238, 447
AcsI RAATTY 4 cut(s) 200, 206, 748, 796
AcyI GRCGYC 1 cut(s) 25
AfaI GTAC 1 cut(s) 823
AfiI CCNNNNNNNGG 2 cut(s) 236, 572
AgsI TTSAA 6 cut(s) 205, 211, 537, 572, 605, 1006
AhdI GACNNNNNGTC 1 cut(s) 255
AjnI CCWGG 1 cut(s) 477
AjuI GAANNNNNNNTTGG 2 cut(s) 657, 689
AluBI AGCT 2 cut(s) 287, 707
AluI AGCT 2 cut(s) 287, 707
Alw26I GTCTC 2 cut(s) 263, 582
AlwNI CAGNNNCTG 1 cut(s) 527
Aor13HI TCCGGA 1 cut(s) 771
AoxI GGCC 2 cut(s) 238, 447
ApeKI GCWGC 1 cut(s) 233
ApoI RAATTY 4 cut(s) 200, 206, 748, 796
AspLEI GCGC 1 cut(s) 763
AspS9I GGNCC 2 cut(s) 9, 227
AsuC2I CCSGG 1 cut(s) 493
AsuHPI GGTGA 4 cut(s) 340, 547, 587, 682
AvaII GGWCC 2 cut(s) 9, 227
BaeGI GKGCMC 1 cut(s) 186
BalI TGGCCA 1 cut(s) 449
BbvI GCAGC 1 cut(s) 220
BccI CCATC 2 cut(s) 15, 637
BciT130I CCWGG 1 cut(s) 479
BclI TGATCA 2 cut(s) 154, 385
BcnI CCSGG 1 cut(s) 493
BcoDI GTCTC 2 cut(s) 263, 582
BfaI CTAG 3 cut(s) 632, 722, 1039
BfoI RGCGCY 1 cut(s) 764
BfuAI ACCTGC 1 cut(s) 238
BisI GCNGC 1 cut(s) 234
BlsI GCNGC 1 cut(s) 235
Bme1390I CCNGG 2 cut(s) 479, 493
Bme18I GGWCC 2 cut(s) 9, 227
BmeRI GACNNNNNGTC 1 cut(s) 255
BmgT120I GGNCC 2 cut(s) 9, 227
BmrFI CCNGG 2 cut(s) 479, 493
BmsI GCATC 2 cut(s) 533, 588
BpuMI CCSGG 1 cut(s) 493
BsaAI YACGTR 1 cut(s) 17
BsaHI GRCGYC 1 cut(s) 25
BsaJI CCNNGG 4 cut(s) 241, 274, 491, 664
BsaWI WCCGGW 2 cut(s) 77, 771
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bsc4I CCNNNNNNNGG 2 cut(s) 236, 572
Bse118I RCCGGY 1 cut(s) 236
Bse3DI GCAATG 3 cut(s) 421, 492, 621
BseAI TCCGGA 1 cut(s) 771
BseBI CCWGG 1 cut(s) 479
BseDI CCNNGG 4 cut(s) 241, 274, 491, 664
BseGI GGATG 4 cut(s) 26, 36, 474, 648
BseLI CCNNNNNNNGG 2 cut(s) 236, 572
BseMI GCAATG 3 cut(s) 421, 492, 621
BseMII CTCAG 2 cut(s) 671, 711
BseRI GAGGAG 2 cut(s) 298, 662
BseSI GKGCMC 1 cut(s) 186
BseXI GCAGC 1 cut(s) 220
BseYI CCCAGC 2 cut(s) 520, 888
BsgI GTGCAG 1 cut(s) 309
Bsh1236I CGCG 1 cut(s) 586
BshFI GGCC 2 cut(s) 240, 449
BsiSI CCGG 4 cut(s) 78, 237, 493, 772
BslFI GGGAC 2 cut(s) 29, 363
BslI CCNNNNNNNGG 2 cut(s) 236, 572
BsmAI GTCTC 2 cut(s) 263, 582
BsmBI CGTCTC 1 cut(s) 263
BsmFI GGGAC 2 cut(s) 29, 363
BsnI GGCC 2 cut(s) 240, 449
Bsp1286I GDGCHC 1 cut(s) 186
Bsp13I TCCGGA 1 cut(s) 771
Bsp143I GATC 4 cut(s) 154, 385, 529, 718
Bsp68I TCGCGA 1 cut(s) 586
BspANI GGCC 2 cut(s) 240, 449
BspCNI CTCAG 2 cut(s) 670, 710
BspEI TCCGGA 1 cut(s) 771
BspFNI CGCG 1 cut(s) 586
BspHI TCATGA 1 cut(s) 736
BspMI ACCTGC 1 cut(s) 238
BsrDI GCAATG 3 cut(s) 421, 492, 621
BsrFI RCCGGY 1 cut(s) 236
BssAI RCCGGY 1 cut(s) 236
BssECI CCNNGG 4 cut(s) 241, 274, 491, 664
BssMI GATC 4 cut(s) 154, 385, 529, 718
BssNI GRCGYC 1 cut(s) 25
BssT1I CCWWGG 3 cut(s) 241, 274, 664
Bst2UI CCWGG 1 cut(s) 479
Bst4CI ACNGT 2 cut(s) 352, 409
Bst6I CTCTTC 1 cut(s) 54
BstACI GRCGYC 1 cut(s) 25
BstBAI YACGTR 1 cut(s) 17
BstC8I GCNNGC 2 cut(s) 238, 832
BstDEI CTNAG 2 cut(s) 657, 697
BstEII GGTNACC 1 cut(s) 553
BstF5I GGATG 4 cut(s) 26, 36, 474, 648
BstFNI CGCG 1 cut(s) 586
BstH2I RGCGCY 1 cut(s) 764
BstHHI GCGC 1 cut(s) 763
BstKTI GATC 4 cut(s) 157, 388, 532, 721
BstMAI GTCTC 2 cut(s) 263, 582
BstMBI GATC 4 cut(s) 154, 385, 529, 718
BstNI CCWGG 1 cut(s) 479
BstPI GGTNACC 1 cut(s) 553
BstSCI CCNGG 2 cut(s) 477, 491
BstSLI GKGCMC 1 cut(s) 186
BstUI CGCG 1 cut(s) 586
BstV1I GCAGC 1 cut(s) 220
BsuRI GGCC 2 cut(s) 240, 449
BtgZI GCGATG 1 cut(s) 513
BtsCI GGATG 4 cut(s) 26, 36, 474, 648
BtsI GCAGTG 1 cut(s) 315
BtsIMutI CAGTG 1 cut(s) 315
BtuMI TCGCGA 1 cut(s) 586
BveI ACCTGC 1 cut(s) 238
Cac8I GCNNGC 2 cut(s) 238, 832
CaiI CAGNNNCTG 1 cut(s) 527
CciI TCATGA 1 cut(s) 736
CfoI GCGC 1 cut(s) 763
Cfr10I RCCGGY 1 cut(s) 236
Cfr13I GGNCC 2 cut(s) 9, 227
CseI GACGC 2 cut(s) 14, 835
Csp6I GTAC 1 cut(s) 822
CviAII CATG 2 cut(s) 737, 876
CviJI RGCY 6 cut(s) 240, 246, 287, 449, 707, 888
CviKI_1 RGCY 6 cut(s) 240, 246, 287, 449, 707, 888
CviQI GTAC 1 cut(s) 822
DdeI CTNAG 2 cut(s) 657, 697
DpnI GATC 4 cut(s) 156, 387, 531, 720
DpnII GATC 4 cut(s) 154, 385, 529, 718
DriI GACNNNNNGTC 1 cut(s) 255
EaeI YGGCCR 2 cut(s) 238, 447
Eam1104I CTCTTC 1 cut(s) 54
Eam1105I GACNNNNNGTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 54
Eco130I CCWWGG 3 cut(s) 241, 274, 664
Eco32I GATATC 1 cut(s) 936
Eco47I GGWCC 2 cut(s) 9, 227
Eco91I GGTNACC 1 cut(s) 553
EcoO65I GGTNACC 1 cut(s) 553
EcoRI GAATTC 1 cut(s) 796
EcoRII CCWGG 1 cut(s) 477
EcoRV GATATC 1 cut(s) 936
EcoT14I CCWWGG 3 cut(s) 241, 274, 664
ErhI CCWWGG 3 cut(s) 241, 274, 664
Esp3I CGTCTC 1 cut(s) 263
FaeI CATG 2 cut(s) 740, 879
FaqI GGGAC 2 cut(s) 29, 363
FatI CATG 2 cut(s) 736, 875
FbaI TGATCA 2 cut(s) 154, 385
Fnu4HI GCNGC 1 cut(s) 234
FokI GGATG 4 cut(s) 23, 33, 461, 655
Fsp4HI GCNGC 1 cut(s) 234
FspBI CTAG 3 cut(s) 632, 722, 1039
GlaI GCGC 1 cut(s) 762
GluI GCNGC 1 cut(s) 234
GsaI CCCAGC 2 cut(s) 524, 892
HaeII RGCGCY 1 cut(s) 764
HaeIII GGCC 2 cut(s) 240, 449
HapII CCGG 4 cut(s) 78, 237, 493, 772
HgaI GACGC 2 cut(s) 14, 835
HhaI GCGC 1 cut(s) 763
Hin1I GRCGYC 1 cut(s) 25
Hin1II CATG 2 cut(s) 740, 879
Hin6I GCGC 1 cut(s) 761
HinP1I GCGC 1 cut(s) 761
HincII GTYRAC 1 cut(s) 469
HindII GTYRAC 1 cut(s) 469
HinfI GANTC 4 cut(s) 279, 609, 695, 996
HpaI GTTAAC 1 cut(s) 469
HpaII CCGG 4 cut(s) 78, 237, 493, 772
HphI GGTGA 4 cut(s) 340, 547, 587, 682
Hpy166II GTNNAC 1 cut(s) 469
Hpy188I TCNGA 7 cut(s) 227, 529, 660, 700, 795, 933, 940
Hpy188III TCNNGA 6 cut(s) 380, 585, 737, 772, 801, 1006
Hpy8I GTNNAC 1 cut(s) 469
Hpy99I CGWCG 1 cut(s) 30
HpyAV CCTTC 2 cut(s) 637, 778
HpyCH4III ACNGT 2 cut(s) 352, 409
HpyCH4IV ACGT 1 cut(s) 16
HpyCH4V TGCA 5 cut(s) 163, 326, 541, 896, 903
HpyF3I CTNAG 2 cut(s) 657, 697
HpySE526I ACGT 1 cut(s) 16
Hsp92I GRCGYC 1 cut(s) 25
Hsp92II CATG 2 cut(s) 740, 879
HspAI GCGC 1 cut(s) 761
Kpn2I TCCGGA 1 cut(s) 771
KroI GCCGGC 1 cut(s) 236
KroNI GCCGGC 1 cut(s) 238
Ksp22I TGATCA 2 cut(s) 154, 385
KspAI GTTAAC 1 cut(s) 469
Kzo9I GATC 4 cut(s) 154, 385, 529, 718
LmnI GCTCC 1 cut(s) 495
Lsp1109I GCAGC 1 cut(s) 220
LweI GCATC 2 cut(s) 533, 588
MaeI CTAG 3 cut(s) 632, 722, 1039
MaeII ACGT 1 cut(s) 16
MaeIII GTNAC 4 cut(s) 346, 403, 553, 851
MalI GATC 4 cut(s) 156, 387, 531, 720
MboI GATC 4 cut(s) 154, 385, 529, 718
MboII GAAGA 3 cut(s) 41, 64, 679
MfeI CAATTG 1 cut(s) 158
MhlI GDGCHC 1 cut(s) 186
MlsI TGGCCA 1 cut(s) 449
MluCI AATT 9 cut(s) 158, 200, 206, 367, 431, 567, 748, 796, 988
MluNI TGGCCA 1 cut(s) 449
MlyI GAGTC 2 cut(s) 689, 1005
MnlI CCTC 8 cut(s) 44, 50, 57, 319, 432, 640, 643, 801
Mox20I TGGCCA 1 cut(s) 449
MroI TCCGGA 1 cut(s) 771
MroNI GCCGGC 1 cut(s) 236
MscI TGGCCA 1 cut(s) 449
MseI TTAA 4 cut(s) 291, 468, 512, 839
MslI CAYNNNNRTG 2 cut(s) 479, 546
Msp20I TGGCCA 1 cut(s) 449
MspI CCGG 4 cut(s) 78, 237, 493, 772
MspR9I CCNGG 2 cut(s) 479, 493
MunI CAATTG 1 cut(s) 158
MvaI CCWGG 1 cut(s) 479
MvnI CGCG 1 cut(s) 586
NaeI GCCGGC 1 cut(s) 238
NciI CCSGG 1 cut(s) 493
NdeII GATC 4 cut(s) 154, 385, 529, 718
NgoMIV GCCGGC 1 cut(s) 236
NlaIII CATG 2 cut(s) 740, 879
NmeAIII GCCGAG 1 cut(s) 864
NmuCI GTSAC 3 cut(s) 346, 553, 851
NruI TCGCGA 1 cut(s) 586
PagI TCATGA 1 cut(s) 736
PcsI WCGNNNNNNNCGW 1 cut(s) 22
PdiI GCCGGC 1 cut(s) 238
PfeI GAWTC 2 cut(s) 279, 609
PkrI GCNGC 1 cut(s) 235
PleI GAGTC 2 cut(s) 689, 1004
PpsI GAGTC 2 cut(s) 689, 1004
Ppu21I YACGTR 1 cut(s) 17
Psp6I CCWGG 1 cut(s) 477
PspEI GGTNACC 1 cut(s) 553
PspFI CCCAGC 2 cut(s) 520, 888
PspGI CCWGG 1 cut(s) 477
PspPI GGNCC 2 cut(s) 9, 227
PstNI CAGNNNCTG 1 cut(s) 527
RruI TCGCGA 1 cut(s) 586
RsaI GTAC 1 cut(s) 823
RsaNI GTAC 1 cut(s) 822
RseI CAYNNNNRTG 2 cut(s) 479, 546
SaqAI TTAA 4 cut(s) 291, 468, 512, 839
SatI GCNGC 1 cut(s) 234
Sau3AI GATC 4 cut(s) 154, 385, 529, 718
Sau96I GGNCC 2 cut(s) 9, 227
SchI GAGTC 2 cut(s) 689, 1005
ScrFI CCNGG 2 cut(s) 479, 493
SduI GDGCHC 1 cut(s) 186
SfaNI GCATC 2 cut(s) 533, 588
SinI GGWCC 2 cut(s) 9, 227
SmiMI CAYNNNNRTG 2 cut(s) 479, 546
Sse9I AATT 9 cut(s) 158, 200, 206, 367, 431, 567, 748, 796, 988
SspI AATATT 2 cut(s) 460, 581
SspMI CTAG 3 cut(s) 632, 722, 1039
StyD4I CCNGG 2 cut(s) 477, 491
StyI CCWWGG 3 cut(s) 241, 274, 664
TaaI ACNGT 2 cut(s) 352, 409
TaiI ACGT 1 cut(s) 19
TasI AATT 9 cut(s) 158, 200, 206, 367, 431, 567, 748, 796, 988
TfiI GAWTC 2 cut(s) 279, 609
Tru1I TTAA 4 cut(s) 291, 468, 512, 839
Tru9I TTAA 4 cut(s) 291, 468, 512, 839
TscAI CASTG 1 cut(s) 322
TseFI GTSAC 3 cut(s) 346, 553, 851
TseI GCWGC 1 cut(s) 233
Tsp45I GTSAC 3 cut(s) 346, 553, 851
TspDTI ATGAA 7 cut(s) 119, 463, 665, 725, 743, 864, 971
TspRI CASTG 1 cut(s) 322
VpaK11BI GGWCC 2 cut(s) 9, 227
XapI RAATTY 4 cut(s) 200, 206, 748, 796
XspI CTAG 3 cut(s) 632, 722, 1039
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.