FvH4_1g28100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0015348
Physical Location & Seq
Forward (+)
19948591 .. 19953974
5384 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g28100.t1

Sequence Viewer

Length: 1152 bp
ATGATGAGGACCTTGAGCGGATGGCGTCGCTTCCTCATGCTTGTCCCTCTTCTCTTCTTTCTTGCTCACTTCTTCTCCGTTACTGAATTGCATTACAATCCACGACCTGTGCCCAACAAACAGAGCAAATCCAACCACTTGGTTCTCGGACCTGCTGCCGGCCAAGGCTTCTCCAATCGTCTCCACTGCCATCCCCAAGGAATCAAAGCTCTTAACAAAACCCATTTCTCCACTGCCCCTACTACCCTTGTTGATAACATTCACTTTGTCACTGTCTTCACCCTATACAACGCCACCCATCCCGATGATCGATTATCAAACTTGGTTACTGTTGGCAATACTTCTTACTCTAAGTTGCAGAGGTCTATGGCCATTTTGAATATTTTCGTTAACTTCATTCAGGCGGCAATGCCCAGGAGCAATGTAATTATTCTAACCGACCCAGCGTCTGATCTTTTAATCCACAGAAATGGGGTCACCATACATCCAATTCAAGGTGAATATTCGCGTGGCAAGTTGATGCTTCAAAGAATCAGGTCTTACATTGCCTTCCTAGAAACAAGAATGGATAAGATTTCTCAAAACCAGGGTCATATTCAACATTACATCTTCACCGACTCGGATATAGCCGTGGTTGATGATATAGGACATATATTTCATGATTATCCAAATTTTCATCTGGCACTGACCTTCCGAAACAACAAAGAACAACCTCTGAATTCTGGATTTATAGCAGTCAGGGGTACTCCTGGTGGCATCTTAAGGGCAAAGACTTTTCTACAGGAAGTACTGAAAGTTTATAGATCAAGATACATGAAAGCTTCACGAATGCTTGGGGATCAGTTGGCCCTTGCCTGGGTGGTCAAGTCACACCCATCTTTTGATCCAAAGAAATTCACTAAAGCCCAAGCTTTCATAGACGATATCGGTGGGGCTGCAGTGTTGTTTTTACCCTGTGCTGTATACAACTGGACACCACCAGAGGGAGCGGGTCAATTTCATGGCATGCCCTTGGATGTTAAGGTCATTCATTTCAAAGGATCAAGGAAACGACTAATGCTCGAGTCATGGAACTTCTTCGGTGCATCTTCTGACATCTCAGATATGTTGTGTCTGATACTGAGGAGTGGAAGAACGAAGTATGATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

384

Amino Acids

43.4

Weight (kDa)

9.84

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45320
fragaria_vesca FvH4_1g28100 FvH4_1g28100
malus_domestica MD00G1094900.v1.1
prunus_persica Prupe.6G155400_v2.0.a1
pyrus_communis pycom5153684g00430
rosa_chinensis RchiOBHm_Chr3g0497141
rosa_laevigata RLG00000022478
rosa_multiflora Rmu_sc0002893.1_g000029
rosa_roxburghii Rroxscaffold_6G00388380
rosa_rugosa Rorug03G0291300
rosa_samantha Rh3AG334600 Rh3BG371700 Rh3CG368400 Rh3DG369400
rosa_wichuraiana Rw3G029360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 160
AccBSI CCGCTC 2 cut(s) 18, 989
AccI GTMKAC 1 cut(s) 963
AccII CGCG 1 cut(s) 508
AciI CCGC 3 cut(s) 18, 404, 989
AclWI GGATC 3 cut(s) 846, 878, 1048
AcoI YGGCCR 2 cut(s) 160, 369
AcsI RAATTY 3 cut(s) 670, 718, 893
AcyI GRCGYC 1 cut(s) 25
AfaI GTAC 2 cut(s) 745, 789
AfiI CCNNNNNNNGG 5 cut(s) 158, 494, 855, 856, 983
AflII CTTAAG 1 cut(s) 760
AgsI TTSAA 5 cut(s) 379, 494, 527, 599, 1036
AhdI GACNNNNNGTC 1 cut(s) 445
AjnI CCWGG 4 cut(s) 413, 585, 748, 854
AluBI AGCT 3 cut(s) 209, 821, 911
AluI AGCT 3 cut(s) 209, 821, 911
Alw26I GTCTC 1 cut(s) 185
AlwI GGATC 3 cut(s) 846, 878, 1048
AlwNI CAGNNNCTG 1 cut(s) 449
Ama87I CYCGRG 1 cut(s) 1061
AoxI GGCC 3 cut(s) 160, 369, 846
ApeKI GCWGC 2 cut(s) 155, 935
ApoI RAATTY 3 cut(s) 670, 718, 893
ArsI GACNNNNNNTTYG 2 cut(s) 574, 606
Asp700I GAANNNNTTC 2 cut(s) 383, 1076
AspS9I GGNCC 3 cut(s) 9, 149, 847
AsuHPI GGTGA 4 cut(s) 271, 469, 509, 604
AvaI CYCGRG 1 cut(s) 1061
AvaII GGWCC 2 cut(s) 9, 149
BaeGI GKGCMC 1 cut(s) 114
BalI TGGCCA 1 cut(s) 371
BbsI GAAGAC 1 cut(s) 268
BbvI GCAGC 2 cut(s) 142, 922
BccI CCATC 4 cut(s) 15, 198, 306, 883
BceAI ACGGC 1 cut(s) 614
BciT130I CCWGG 4 cut(s) 415, 587, 750, 856
BcoDI GTCTC 1 cut(s) 185
BfaI CTAG 1 cut(s) 554
BfmI CTRYAG 2 cut(s) 779, 936
BfrI CTTAAG 1 cut(s) 760
BfuAI ACCTGC 1 cut(s) 160
BisI GCNGC 3 cut(s) 156, 405, 936
BlsI GCNGC 3 cut(s) 157, 406, 937
BmcAI AGTACT 1 cut(s) 789
Bme1390I CCNGG 4 cut(s) 415, 587, 750, 856
Bme18I GGWCC 2 cut(s) 9, 149
BmeRI GACNNNNNGTC 1 cut(s) 445
BmeT110I CYCGRG 1 cut(s) 1061
BmgT120I GGNCC 3 cut(s) 9, 149, 847
BmrFI CCNGG 4 cut(s) 415, 587, 750, 856
BmsI GCATC 3 cut(s) 510, 765, 1094
BpiI GAAGAC 1 cut(s) 268
BpuEI CTTGAG 1 cut(s) 34
Bsa29I ATCGAT 1 cut(s) 310
BsaHI GRCGYC 1 cut(s) 25
BsaJI CCNNGG 7 cut(s) 163, 196, 413, 586, 630, 855, 1011
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bsc4I CCNNNNNNNGG 5 cut(s) 158, 494, 855, 856, 983
Bse118I RCCGGY 1 cut(s) 158
Bse1I ACTGG 1 cut(s) 974
Bse3DI GCAATG 3 cut(s) 414, 427, 543
BseBI CCWGG 4 cut(s) 415, 587, 750, 856
BseCI ATCGAT 1 cut(s) 310
BseDI CCNNGG 7 cut(s) 163, 196, 413, 586, 630, 855, 1011
BseGI GGATG 5 cut(s) 26, 190, 298, 484, 1021
BseLI CCNNNNNNNGG 5 cut(s) 158, 494, 855, 856, 983
BseMI GCAATG 3 cut(s) 414, 427, 543
BseMII CTCAG 2 cut(s) 1112, 1113
BseNI ACTGG 1 cut(s) 974
BseRI GAGGAG 1 cut(s) 1138
BseSI GKGCMC 1 cut(s) 114
BseXI GCAGC 2 cut(s) 142, 922
BseYI CCCAGC 1 cut(s) 442
Bsh1236I CGCG 1 cut(s) 508
BshFI GGCC 3 cut(s) 162, 371, 848
BshVI ATCGAT 1 cut(s) 310
BsiHKCI CYCGRG 1 cut(s) 1061
BsiSI CCGG 1 cut(s) 159
BslFI GGGAC 1 cut(s) 29
BslI CCNNNNNNNGG 5 cut(s) 158, 494, 855, 856, 983
BsmAI GTCTC 1 cut(s) 185
BsmBI CGTCTC 1 cut(s) 185
BsmFI GGGAC 1 cut(s) 29
BsmI GAATGC 1 cut(s) 834
BsnI GGCC 3 cut(s) 162, 371, 848
BsoBI CYCGRG 1 cut(s) 1061
Bsp1286I GDGCHC 1 cut(s) 114
Bsp143I GATC 6 cut(s) 307, 451, 803, 838, 883, 1040
BspACI CCGC 3 cut(s) 18, 404, 989
BspANI GGCC 3 cut(s) 162, 371, 848
BspCNI CTCAG 2 cut(s) 1112, 1113
BspDI ATCGAT 1 cut(s) 310
BspFNI CGCG 1 cut(s) 508
BspHI TCATGA 1 cut(s) 658
BspMAI CTGCAG 1 cut(s) 940
BspMI ACCTGC 1 cut(s) 160
BspPI GGATC 3 cut(s) 846, 878, 1048
BspTI CTTAAG 1 cut(s) 760
BsrBI CCGCTC 2 cut(s) 18, 989
BsrDI GCAATG 3 cut(s) 414, 427, 543
BsrFI RCCGGY 1 cut(s) 158
BsrI ACTGG 1 cut(s) 974
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 7 cut(s) 163, 196, 413, 586, 630, 855, 1011
BssMI GATC 6 cut(s) 307, 451, 803, 838, 883, 1040
BssNAI GTATAC 1 cut(s) 964
BssNI GRCGYC 1 cut(s) 25
BssT1I CCWWGG 3 cut(s) 163, 196, 1011
Bst1107I GTATAC 1 cut(s) 964
Bst2UI CCWGG 4 cut(s) 415, 587, 750, 856
Bst4CI ACNGT 2 cut(s) 274, 331
Bst6I CTCTTC 2 cut(s) 54, 59
BstACI GRCGYC 1 cut(s) 25
BstAFI CTTAAG 1 cut(s) 760
BstC8I GCNNGC 2 cut(s) 160, 1007
BstDEI CTNAG 3 cut(s) 351, 1099, 1121
BstDSI CCRYGG 1 cut(s) 630
BstEII GGTNACC 1 cut(s) 475
BstF5I GGATG 5 cut(s) 26, 190, 298, 484, 1021
BstFNI CGCG 1 cut(s) 508
BstKTI GATC 6 cut(s) 310, 454, 806, 841, 886, 1043
BstMAI GTCTC 1 cut(s) 185
BstMBI GATC 6 cut(s) 307, 451, 803, 838, 883, 1040
BstNI CCWGG 4 cut(s) 415, 587, 750, 856
BstNSI RCATGY 1 cut(s) 1009
BstPI GGTNACC 1 cut(s) 475
BstSCI CCNGG 4 cut(s) 413, 585, 748, 854
BstSFI CTRYAG 2 cut(s) 779, 936
BstSLI GKGCMC 1 cut(s) 114
BstUI CGCG 1 cut(s) 508
BstV1I GCAGC 2 cut(s) 142, 922
BstV2I GAAGAC 1 cut(s) 268
BstXI CCANNNNNNTGG 2 cut(s) 139, 470
BstZ17I GTATAC 1 cut(s) 964
Bsu15I ATCGAT 1 cut(s) 310
BsuRI GGCC 3 cut(s) 162, 371, 848
BsuTUI ATCGAT 1 cut(s) 310
BtgI CCRYGG 1 cut(s) 630
BtsCI GGATG 5 cut(s) 26, 190, 298, 484, 1021
BtsI GCAGTG 3 cut(s) 184, 231, 945
BtsIMutI CAGTG 5 cut(s) 184, 231, 270, 683, 945
BveI ACCTGC 1 cut(s) 160
Cac8I GCNNGC 2 cut(s) 160, 1007
CaiI CAGNNNCTG 1 cut(s) 449
CciI TCATGA 1 cut(s) 658
Cfr10I RCCGGY 1 cut(s) 158
Cfr13I GGNCC 3 cut(s) 9, 149, 847
ClaI ATCGAT 1 cut(s) 310
CseI GACGC 2 cut(s) 14, 435
Csp6I GTAC 2 cut(s) 744, 788
CviAII CATG 6 cut(s) 37, 659, 814, 1001, 1006, 1068
CviQI GTAC 2 cut(s) 744, 788
DdeI CTNAG 3 cut(s) 351, 1099, 1121
DpnI GATC 6 cut(s) 309, 453, 805, 840, 885, 1042
DpnII GATC 6 cut(s) 307, 451, 803, 838, 883, 1040
DriI GACNNNNNGTC 1 cut(s) 445
EaeI YGGCCR 2 cut(s) 160, 369
Eam1104I CTCTTC 2 cut(s) 54, 59
Eam1105I GACNNNNNGTC 1 cut(s) 445
EarI CTCTTC 2 cut(s) 54, 59
Eco130I CCWWGG 3 cut(s) 163, 196, 1011
Eco32I GATATC 1 cut(s) 925
Eco47I GGWCC 2 cut(s) 9, 149
Eco88I CYCGRG 1 cut(s) 1061
Eco91I GGTNACC 1 cut(s) 475
EcoO109I RGGNCCY 1 cut(s) 9
EcoO65I GGTNACC 1 cut(s) 475
EcoRI GAATTC 1 cut(s) 718
EcoRII CCWGG 4 cut(s) 413, 585, 748, 854
EcoRV GATATC 1 cut(s) 925
EcoT14I CCWWGG 3 cut(s) 163, 196, 1011
ErhI CCWWGG 3 cut(s) 163, 196, 1011
Esp3I CGTCTC 1 cut(s) 185
FaeI CATG 6 cut(s) 40, 662, 817, 1004, 1009, 1071
FaqI GGGAC 1 cut(s) 29
FatI CATG 6 cut(s) 36, 658, 813, 1000, 1005, 1067
FauI CCCGC 1 cut(s) 982
FblI GTMKAC 1 cut(s) 963
Fnu4HI GCNGC 3 cut(s) 156, 405, 936
FokI GGATG 5 cut(s) 33, 177, 285, 471, 1028
Fsp4HI GCNGC 3 cut(s) 156, 405, 936
FspBI CTAG 1 cut(s) 554
GluI GCNGC 3 cut(s) 156, 405, 936
GsaI CCCAGC 1 cut(s) 446
HaeIII GGCC 3 cut(s) 162, 371, 848
HapII CCGG 1 cut(s) 159
HgaI GACGC 2 cut(s) 14, 435
Hin1I GRCGYC 1 cut(s) 25
Hin1II CATG 6 cut(s) 40, 662, 817, 1004, 1009, 1071
HincII GTYRAC 1 cut(s) 391
HindII GTYRAC 1 cut(s) 391
HindIII AAGCTT 2 cut(s) 819, 909
HinfI GANTC 4 cut(s) 201, 531, 617, 1064
HpaI GTTAAC 1 cut(s) 391
HpaII CCGG 1 cut(s) 159
HphI GGTGA 4 cut(s) 271, 469, 509, 604
Hpy166II GTNNAC 2 cut(s) 391, 964
Hpy188I TCNGA 8 cut(s) 149, 451, 622, 695, 717, 1093, 1102, 1116
Hpy188III TCNNGA 5 cut(s) 302, 659, 723, 807, 825
Hpy8I GTNNAC 2 cut(s) 391, 964
Hpy99I CGWCG 1 cut(s) 30
HpyAV CCTTC 2 cut(s) 559, 700
HpyCH4III ACNGT 2 cut(s) 274, 331
HpyCH4V TGCA 4 cut(s) 91, 358, 938, 1085
HpyF3I CTNAG 3 cut(s) 351, 1099, 1121
Hsp92I GRCGYC 1 cut(s) 25
Hsp92II CATG 6 cut(s) 40, 662, 817, 1004, 1009, 1071
KroI GCCGGC 1 cut(s) 158
KroNI GCCGGC 1 cut(s) 160
KspAI GTTAAC 1 cut(s) 391
Kzo9I GATC 6 cut(s) 307, 451, 803, 838, 883, 1040
LmnI GCTCC 2 cut(s) 417, 986
Lsp1109I GCAGC 2 cut(s) 142, 922
LweI GCATC 3 cut(s) 510, 765, 1094
MaeI CTAG 1 cut(s) 554
MaeIII GTNAC 5 cut(s) 79, 268, 325, 475, 867
MalI GATC 6 cut(s) 309, 453, 805, 840, 885, 1042
MbiI CCGCTC 2 cut(s) 18, 989
MboI GATC 6 cut(s) 307, 451, 803, 838, 883, 1040
MboII GAAGA 8 cut(s) 41, 46, 64, 268, 601, 1069, 1080, 1143
MhlI GDGCHC 1 cut(s) 114
MlsI TGGCCA 1 cut(s) 371
MluCI AATT 7 cut(s) 86, 426, 489, 670, 718, 893, 995
MluNI TGGCCA 1 cut(s) 371
MlyI GAGTC 2 cut(s) 611, 1073
MmeI TCCRAC 1 cut(s) 156
MnlI CCTC 6 cut(s) 44, 57, 354, 723, 976, 1116
Mox20I TGGCCA 1 cut(s) 371
MroNI GCCGGC 1 cut(s) 158
MroXI GAANNNNTTC 2 cut(s) 383, 1076
MscI TGGCCA 1 cut(s) 371
MseI TTAA 5 cut(s) 213, 390, 458, 761, 1020
MslI CAYNNNNRTG 2 cut(s) 303, 468
Msp20I TGGCCA 1 cut(s) 371
MspCI CTTAAG 1 cut(s) 760
MspI CCGG 1 cut(s) 159
MspR9I CCNGG 4 cut(s) 415, 587, 750, 856
Mva1269I GAATGC 1 cut(s) 834
MvaI CCWGG 4 cut(s) 415, 587, 750, 856
MvnI CGCG 1 cut(s) 508
NaeI GCCGGC 1 cut(s) 160
NdeII GATC 6 cut(s) 307, 451, 803, 838, 883, 1040
NgoMIV GCCGGC 1 cut(s) 158
NlaIII CATG 6 cut(s) 40, 662, 817, 1004, 1009, 1071
NmuCI GTSAC 3 cut(s) 268, 475, 867
NspI RCATGY 1 cut(s) 1009
PaeI GCATGC 1 cut(s) 1009
PaeR7I CTCGAG 1 cut(s) 1061
PagI TCATGA 1 cut(s) 658
PctI GAATGC 1 cut(s) 834
PdiI GCCGGC 1 cut(s) 160
PdmI GAANNNNTTC 2 cut(s) 383, 1076
PfeI GAWTC 2 cut(s) 201, 531
PkrI GCNGC 3 cut(s) 157, 406, 937
PleI GAGTC 2 cut(s) 611, 1072
PpsI GAGTC 2 cut(s) 611, 1072
PpuMI RGGWCCY 1 cut(s) 9
Psp5II RGGWCCY 1 cut(s) 9
Psp6I CCWGG 4 cut(s) 413, 585, 748, 854
PspEI GGTNACC 1 cut(s) 475
PspFI CCCAGC 1 cut(s) 442
PspGI CCWGG 4 cut(s) 413, 585, 748, 854
PspPI GGNCC 3 cut(s) 9, 149, 847
PspPPI RGGWCCY 1 cut(s) 9
PspXI VCTCGAGB 1 cut(s) 1061
PstI CTGCAG 1 cut(s) 940
PstNI CAGNNNCTG 1 cut(s) 449
RsaI GTAC 2 cut(s) 745, 789
RsaNI GTAC 2 cut(s) 744, 788
RseI CAYNNNNRTG 2 cut(s) 303, 468
SaqAI TTAA 5 cut(s) 213, 390, 458, 761, 1020
SatI GCNGC 3 cut(s) 156, 405, 936
Sau3AI GATC 6 cut(s) 307, 451, 803, 838, 883, 1040
Sau96I GGNCC 3 cut(s) 9, 149, 847
ScaI AGTACT 1 cut(s) 789
SchI GAGTC 2 cut(s) 611, 1073
ScrFI CCNGG 4 cut(s) 415, 587, 750, 856
SduI GDGCHC 1 cut(s) 114
SfaNI GCATC 3 cut(s) 510, 765, 1094
SfcI CTRYAG 2 cut(s) 779, 936
Sfr274I CTCGAG 1 cut(s) 1061
SinI GGWCC 2 cut(s) 9, 149
SlaI CTCGAG 1 cut(s) 1061
SmiMI CAYNNNNRTG 2 cut(s) 303, 468
SmlI CTYRAG 3 cut(s) 13, 760, 1061
SmoI CTYRAG 3 cut(s) 13, 760, 1061
SphI GCATGC 1 cut(s) 1009
Sse9I AATT 7 cut(s) 86, 426, 489, 670, 718, 893, 995
SsiI CCGC 3 cut(s) 18, 404, 989
SspI AATATT 2 cut(s) 382, 503
SspMI CTAG 1 cut(s) 554
StyD4I CCNGG 4 cut(s) 413, 585, 748, 854
StyI CCWWGG 3 cut(s) 163, 196, 1011
TaaI ACNGT 2 cut(s) 274, 331
TaqI TCGA 2 cut(s) 310, 1062
TasI AATT 7 cut(s) 86, 426, 489, 670, 718, 893, 995
TatI WGTACW 1 cut(s) 787
TauI GCSGC 1 cut(s) 407
TfiI GAWTC 2 cut(s) 201, 531
Tru1I TTAA 5 cut(s) 213, 390, 458, 761, 1020
Tru9I TTAA 5 cut(s) 213, 390, 458, 761, 1020
TscAI CASTG 5 cut(s) 191, 238, 277, 690, 945
TseFI GTSAC 3 cut(s) 268, 475, 867
TseI GCWGC 2 cut(s) 155, 935
Tsp45I GTSAC 3 cut(s) 268, 475, 867
TspDTI ATGAA 7 cut(s) 385, 647, 665, 830, 904, 989, 1019
TspGWI ACGGA 1 cut(s) 67
TspRI CASTG 5 cut(s) 191, 238, 277, 690, 945
Vha464I CTTAAG 1 cut(s) 760
VpaK11BI GGWCC 2 cut(s) 9, 149
XapI RAATTY 3 cut(s) 670, 718, 893
XceI RCATGY 1 cut(s) 1009
XhoI CTCGAG 1 cut(s) 1061
XmiI GTMKAC 1 cut(s) 963
XmnI GAANNNNTTC 2 cut(s) 383, 1076
XspI CTAG 1 cut(s) 554
ZrmI AGTACT 1 cut(s) 789
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.