Rroxscaffold_6G00388380

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0015348
Physical Location & Seq
Forward (+)
1253173 .. 1256724
3552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00388380.1

Sequence Viewer

Length: 1224 bp
ATGGTGTGCGCGATTTGTTCCGAAGAAAATAAAAAATTGTTTAAAAGAACAGGTGACCTATGCTGGGCGCAGAGCGGAGTAGAGACCATAAGTGGATGGCGTCGCTTCCTCATCCTCGTCCCTCTTCTTTTCTTTCTTGCTCACTTCTTCTCCGTTGATCAATTGCATTACAACCCACGACCTGTGCCCAACAAAGCAAGCAAATTCAACCACTTGGTTCTGGGACCTGCTGCCGGCCAAGGCTTGACCAATCGTCTCCAATGCCAACCCCAAGGAATCAAAGCTCTTAACAAAACCCATTTCTCCTCTGCCCCTCCTGCCCCTGCCCTTGATGACATTCACTTTGTCACCGTCTTCACCCTGTATAATTCCACCCGTCCCGATGATCAGTTATCAAACTTGGTTACAGTTGGCAATGCTTCTTACACTAAATTGGAGAGGTCTATGGCCATTCTCAATATTTTCGTTAACTTCATCCAGGTGGCAATGCCCCGGAGCAATGTAGTGATTTTAACTGACCCAGCATCTGATCTTTCAATGCACAGAAATGGGGTCACCATATATCCAATTCAAGGTGAATATTCGCGAGACAAGTTGATGCTTCAAAGAATCAGGTCTTACATTGCCTTCCTAGAAACAAGGATGGAGGAGGTTTCTCAGAACCAAGGTCATATTCATCATTACATCTTCACCGACTCAGATATAGCCGTCGTTGATGATCTAGGACATATATTTCATGATTATCCAAATTTTCATCTGGCACTGACCTTCCGGAACAACAAAGAACAACCTCTGAATTCAGGATTTATAGCAGTCAGGGGTACTCCTGCTGGCATTTTAAGGGCAAAGACTTTTCTACAAGAAGTACTGAAAGTTTACAGGTCAAGGGTACATGAAAGCTTCACGGATGCTTGGGGATCAGTTGGCCCTTGCCTGGTATTATTTTTACCCTGTGCTGTGTACAATTGGACACCACCAGAGGGGGTGCAGGTCAATTTCATGGCATGCCCTTGGATGTTAAGATATGTTGTGTCTGATATTGAAGAGTGGGGAGAACGAAAAAGGAATTATGCTCTTTACCGCTCACAACAAATGGCAGCACAAGGTAACTACTTTCTCGTCAGCAAGGTAATGGTGGCTGCATCAAATGCTATTTCATGTGTGCTGGATGGATTTGATAGAGAAAAGGCATGGTTACTGGTGCCTACTGTAACCTTGCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

407

Amino Acids

46.1

Weight (kDa)

8.54

Isoelectric Point (pI)

47.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45320
fragaria_vesca FvH4_1g28100 FvH4_1g28100
malus_domestica MD00G1094900.v1.1
prunus_persica Prupe.6G155400_v2.0.a1
pyrus_communis pycom5153684g00430
rosa_chinensis RchiOBHm_Chr3g0497141
rosa_laevigata RLG00000022478
rosa_multiflora Rmu_sc0002893.1_g000029
rosa_roxburghii Rroxscaffold_6G00388380
rosa_rugosa Rorug03G0291300
rosa_samantha Rh3AG334600 Rh3BG371700 Rh3CG368400 Rh3DG369400
rosa_wichuraiana Rw3G029360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 235, 979
AccB1I GGYRCC 1 cut(s) 1201
AccBSI CCGCTC 2 cut(s) 75, 1083
AccII CGCG 2 cut(s) 11, 586
AccIII TCCGGA 1 cut(s) 771
AciI CCGC 2 cut(s) 75, 1081
AclWI GGATC 1 cut(s) 925
AcoI YGGCCR 2 cut(s) 235, 447
AcsI RAATTY 3 cut(s) 203, 748, 796
AcyI GRCGYC 1 cut(s) 100
AfaI GTAC 4 cut(s) 823, 867, 891, 962
AfiI CCNNNNNNNGG 5 cut(s) 64, 233, 572, 934, 980
AgsI TTSAA 5 cut(s) 208, 537, 572, 605, 1043
AhdI GACNNNNNGTC 1 cut(s) 252
AjnI CCWGG 2 cut(s) 477, 933
AjuI GAANNNNNNNTTGG 2 cut(s) 657, 689
AluBI AGCT 2 cut(s) 284, 900
AluI AGCT 2 cut(s) 284, 900
Alw26I GTCTC 3 cut(s) 77, 260, 582
AlwI GGATC 1 cut(s) 925
AlwNI CAGNNNCTG 1 cut(s) 527
Aor13HI TCCGGA 1 cut(s) 771
AoxI GGCC 3 cut(s) 235, 447, 925
ApeKI GCWGC 3 cut(s) 230, 1097, 1139
ApoI RAATTY 3 cut(s) 203, 748, 796
ArsI GACNNNNNNTTYG 2 cut(s) 326, 358
AspLEI GCGC 2 cut(s) 11, 70
AspS9I GGNCC 2 cut(s) 224, 926
AsuC2I CCSGG 1 cut(s) 493
AsuHPI GGTGA 6 cut(s) 65, 340, 349, 547, 587, 682
AvaII GGWCC 1 cut(s) 224
BaeGI GKGCMC 1 cut(s) 189
BalI TGGCCA 1 cut(s) 449
BanI GGYRCC 1 cut(s) 1201
BbsI GAAGAC 1 cut(s) 346
BbvI GCAGC 3 cut(s) 217, 1109, 1126
BccI CCATC 3 cut(s) 90, 637, 1163
BceAI ACGGC 1 cut(s) 692
BciT130I CCWGG 2 cut(s) 479, 935
BclI TGATCA 2 cut(s) 157, 385
BcnI CCSGG 1 cut(s) 493
BcoDI GTCTC 3 cut(s) 77, 260, 582
BfaI CTAG 3 cut(s) 632, 722, 1222
BfuAI ACCTGC 2 cut(s) 235, 979
BisI GCNGC 3 cut(s) 231, 1098, 1140
BlsI GCNGC 3 cut(s) 232, 1099, 1141
BmcAI AGTACT 1 cut(s) 867
Bme1390I CCNGG 3 cut(s) 479, 493, 935
Bme18I GGWCC 1 cut(s) 224
BmeRI GACNNNNNGTC 1 cut(s) 252
BmgT120I GGNCC 2 cut(s) 224, 926
BmiI GGNNCC 2 cut(s) 225, 1203
BmrFI CCNGG 3 cut(s) 479, 493, 935
BmsI GCATC 4 cut(s) 533, 588, 898, 1151
BpiI GAAGAC 1 cut(s) 346
BpuMI CCSGG 1 cut(s) 493
BsaHI GRCGYC 1 cut(s) 100
BsaI GGTCTC 1 cut(s) 77
BsaJI CCNNGG 5 cut(s) 238, 271, 491, 664, 1010
BsaWI WCCGGW 1 cut(s) 771
BsaXI ACNNNNNCTCC 2 cut(s) 134, 164
Bsc4I CCNNNNNNNGG 5 cut(s) 64, 233, 572, 934, 980
Bse118I RCCGGY 1 cut(s) 233
Bse1I ACTGG 1 cut(s) 1203
Bse3DI GCAATG 4 cut(s) 421, 492, 505, 621
BseAI TCCGGA 1 cut(s) 771
BseBI CCWGG 2 cut(s) 479, 935
BseDI CCNNGG 5 cut(s) 238, 271, 491, 664, 1010
BseGI GGATG 7 cut(s) 101, 111, 474, 648, 913, 1020, 1174
BseLI CCNNNNNNNGG 5 cut(s) 64, 233, 572, 934, 980
BseMI GCAATG 4 cut(s) 421, 492, 505, 621
BseMII CTCAG 2 cut(s) 671, 711
BseNI ACTGG 1 cut(s) 1203
BseRI GAGGAG 2 cut(s) 295, 662
BseSI GKGCMC 1 cut(s) 189
BseXI GCAGC 3 cut(s) 217, 1109, 1126
BseYI CCCAGC 2 cut(s) 63, 520
BsgI GTGCAG 1 cut(s) 1007
Bsh1236I CGCG 2 cut(s) 11, 586
BshFI GGCC 3 cut(s) 237, 449, 927
BshNI GGYRCC 1 cut(s) 1201
BsiSI CCGG 3 cut(s) 234, 493, 772
BslFI GGGAC 3 cut(s) 104, 237, 363
BslI CCNNNNNNNGG 5 cut(s) 64, 233, 572, 934, 980
BsmAI GTCTC 3 cut(s) 77, 260, 582
BsmBI CGTCTC 1 cut(s) 260
BsmFI GGGAC 3 cut(s) 104, 237, 363
BsnI GGCC 3 cut(s) 237, 449, 927
Bso31I GGTCTC 1 cut(s) 77
Bsp1286I GDGCHC 1 cut(s) 189
Bsp13I TCCGGA 1 cut(s) 771
Bsp1407I TGTACA 1 cut(s) 960
Bsp143I GATC 5 cut(s) 157, 385, 529, 718, 917
Bsp68I TCGCGA 1 cut(s) 586
BspACI CCGC 2 cut(s) 75, 1081
BspANI GGCC 3 cut(s) 237, 449, 927
BspCNI CTCAG 2 cut(s) 670, 710
BspEI TCCGGA 1 cut(s) 771
BspFNI CGCG 2 cut(s) 11, 586
BspHI TCATGA 1 cut(s) 736
BspLI GGNNCC 2 cut(s) 225, 1203
BspMI ACCTGC 2 cut(s) 235, 979
BspPI GGATC 1 cut(s) 925
BspT107I GGYRCC 1 cut(s) 1201
BspTNI GGTCTC 1 cut(s) 77
BsrBI CCGCTC 2 cut(s) 75, 1083
BsrDI GCAATG 4 cut(s) 421, 492, 505, 621
BsrFI RCCGGY 1 cut(s) 233
BsrGI TGTACA 1 cut(s) 960
BsrI ACTGG 1 cut(s) 1203
BssAI RCCGGY 1 cut(s) 233
BssECI CCNNGG 5 cut(s) 238, 271, 491, 664, 1010
BssMI GATC 5 cut(s) 157, 385, 529, 718, 917
BssNI GRCGYC 1 cut(s) 100
BssT1I CCWWGG 4 cut(s) 238, 271, 664, 1010
Bst2UI CCWGG 2 cut(s) 479, 935
Bst4CI ACNGT 3 cut(s) 352, 409, 1210
Bst6I CTCTTC 2 cut(s) 129, 1038
BstACI GRCGYC 1 cut(s) 100
BstAPI GCANNNNNTGC 1 cut(s) 1148
BstAUI TGTACA 1 cut(s) 960
BstC8I GCNNGC 4 cut(s) 199, 235, 832, 1006
BstDEI CTNAG 2 cut(s) 657, 697
BstEII GGTNACC 2 cut(s) 53, 553
BstF5I GGATG 7 cut(s) 101, 111, 474, 648, 913, 1020, 1174
BstFNI CGCG 2 cut(s) 11, 586
BstHHI GCGC 2 cut(s) 11, 70
BstKTI GATC 5 cut(s) 160, 388, 532, 721, 920
BstMAI GTCTC 3 cut(s) 77, 260, 582
BstMBI GATC 5 cut(s) 157, 385, 529, 718, 917
BstMWI GCNNNNNNNGC 2 cut(s) 317, 1148
BstNI CCWGG 2 cut(s) 479, 935
BstNSI RCATGY 1 cut(s) 1008
BstPI GGTNACC 2 cut(s) 53, 553
BstSCI CCNGG 3 cut(s) 477, 491, 933
BstSLI GKGCMC 1 cut(s) 189
BstUI CGCG 2 cut(s) 11, 586
BstV1I GCAGC 3 cut(s) 217, 1109, 1126
BstV2I GAAGAC 1 cut(s) 346
BsuRI GGCC 3 cut(s) 237, 449, 927
BtsCI GGATG 7 cut(s) 101, 111, 474, 648, 913, 1020, 1174
BtsIMutI CAGTG 1 cut(s) 761
BtuMI TCGCGA 1 cut(s) 586
BveI ACCTGC 2 cut(s) 235, 979
Cac8I GCNNGC 4 cut(s) 199, 235, 832, 1006
CaiI CAGNNNCTG 1 cut(s) 527
CciI TCATGA 1 cut(s) 736
CfoI GCGC 2 cut(s) 11, 70
Cfr10I RCCGGY 1 cut(s) 233
Cfr13I GGNCC 2 cut(s) 224, 926
CseI GACGC 1 cut(s) 89
Csp6I GTAC 4 cut(s) 822, 866, 890, 961
CviAII CATG 6 cut(s) 737, 893, 1000, 1005, 1158, 1191
CviJI RGCY 8 cut(s) 237, 243, 284, 449, 707, 900, 927, 1139
CviKI_1 RGCY 8 cut(s) 237, 243, 284, 449, 707, 900, 927, 1139
CviQI GTAC 4 cut(s) 822, 866, 890, 961
DdeI CTNAG 2 cut(s) 657, 697
DpnI GATC 5 cut(s) 159, 387, 531, 720, 919
DpnII GATC 5 cut(s) 157, 385, 529, 718, 917
DraI TTTAAA 1 cut(s) 43
DriI GACNNNNNGTC 1 cut(s) 252
EaeI YGGCCR 2 cut(s) 235, 447
Eam1104I CTCTTC 2 cut(s) 129, 1038
Eam1105I GACNNNNNGTC 1 cut(s) 252
EarI CTCTTC 2 cut(s) 129, 1038
Eco130I CCWWGG 4 cut(s) 238, 271, 664, 1010
Eco31I GGTCTC 1 cut(s) 77
Eco47I GGWCC 1 cut(s) 224
Eco91I GGTNACC 2 cut(s) 53, 553
EcoO109I RGGNCCY 1 cut(s) 224
EcoO65I GGTNACC 2 cut(s) 53, 553
EcoRI GAATTC 1 cut(s) 796
EcoRII CCWGG 2 cut(s) 477, 933
EcoT14I CCWWGG 4 cut(s) 238, 271, 664, 1010
ErhI CCWWGG 4 cut(s) 238, 271, 664, 1010
Esp3I CGTCTC 1 cut(s) 260
FaeI CATG 6 cut(s) 740, 896, 1003, 1008, 1161, 1194
FaqI GGGAC 3 cut(s) 104, 237, 363
FatI CATG 6 cut(s) 736, 892, 999, 1004, 1157, 1190
FbaI TGATCA 2 cut(s) 157, 385
Fnu4HI GCNGC 3 cut(s) 231, 1098, 1140
FokI GGATG 7 cut(s) 98, 108, 461, 655, 920, 1027, 1181
Fsp4HI GCNGC 3 cut(s) 231, 1098, 1140
FspBI CTAG 3 cut(s) 632, 722, 1222
GlaI GCGC 2 cut(s) 10, 69
GluI GCNGC 3 cut(s) 231, 1098, 1140
GsaI CCCAGC 2 cut(s) 67, 524
HaeIII GGCC 3 cut(s) 237, 449, 927
HapII CCGG 3 cut(s) 234, 493, 772
HgaI GACGC 1 cut(s) 89
HhaI GCGC 2 cut(s) 11, 70
Hin1I GRCGYC 1 cut(s) 100
Hin1II CATG 6 cut(s) 740, 896, 1003, 1008, 1161, 1194
Hin6I GCGC 2 cut(s) 9, 68
HinP1I GCGC 2 cut(s) 9, 68
HincII GTYRAC 1 cut(s) 469
HindII GTYRAC 1 cut(s) 469
HindIII AAGCTT 1 cut(s) 898
HinfI GANTC 3 cut(s) 276, 609, 695
HpaI GTTAAC 1 cut(s) 469
HpaII CCGG 3 cut(s) 234, 493, 772
HphI GGTGA 6 cut(s) 65, 340, 349, 547, 587, 682
Hpy166II GTNNAC 3 cut(s) 469, 877, 961
Hpy188I TCNGA 6 cut(s) 22, 529, 660, 700, 795, 1036
Hpy188III TCNNGA 5 cut(s) 380, 585, 737, 772, 801
Hpy8I GTNNAC 3 cut(s) 469, 877, 961
Hpy99I CGWCG 2 cut(s) 105, 713
HpyAV CCTTC 2 cut(s) 637, 778
HpyCH4III ACNGT 3 cut(s) 352, 409, 1210
HpyCH4V TGCA 5 cut(s) 166, 541, 988, 1142, 1219
HpyF10VI GCNNNNNNNGC 2 cut(s) 317, 1148
HpyF3I CTNAG 2 cut(s) 657, 697
Hsp92I GRCGYC 1 cut(s) 100
Hsp92II CATG 6 cut(s) 740, 896, 1003, 1008, 1161, 1194
HspAI GCGC 2 cut(s) 9, 68
Kpn2I TCCGGA 1 cut(s) 771
KroI GCCGGC 1 cut(s) 233
KroNI GCCGGC 1 cut(s) 235
Ksp22I TGATCA 2 cut(s) 157, 385
KspAI GTTAAC 1 cut(s) 469
Kzo9I GATC 5 cut(s) 157, 385, 529, 718, 917
LmnI GCTCC 1 cut(s) 495
Lsp1109I GCAGC 3 cut(s) 217, 1109, 1126
LweI GCATC 4 cut(s) 533, 588, 898, 1151
MaeI CTAG 3 cut(s) 632, 722, 1222
MaeIII GTNAC 7 cut(s) 53, 346, 403, 553, 1106, 1194, 1210
MalI GATC 5 cut(s) 159, 387, 531, 720, 919
MbiI CCGCTC 2 cut(s) 75, 1083
MboI GATC 5 cut(s) 157, 385, 529, 718, 917
MboII GAAGA 6 cut(s) 35, 116, 139, 346, 679, 1055
MfeI CAATTG 2 cut(s) 161, 964
MhlI GDGCHC 1 cut(s) 189
MlsI TGGCCA 1 cut(s) 449
MluNI TGGCCA 1 cut(s) 449
MlyI GAGTC 1 cut(s) 689
Mox20I TGGCCA 1 cut(s) 449
MroI TCCGGA 1 cut(s) 771
MroNI GCCGGC 1 cut(s) 233
MscI TGGCCA 1 cut(s) 449
MseI TTAA 6 cut(s) 42, 288, 468, 512, 839, 1019
MslI CAYNNNNRTG 2 cut(s) 479, 546
Msp20I TGGCCA 1 cut(s) 449
MspI CCGG 3 cut(s) 234, 493, 772
MspR9I CCNGG 3 cut(s) 479, 493, 935
MunI CAATTG 2 cut(s) 161, 964
MvaI CCWGG 2 cut(s) 479, 935
MvnI CGCG 2 cut(s) 11, 586
MwoI GCNNNNNNNGC 2 cut(s) 317, 1148
NaeI GCCGGC 1 cut(s) 235
NciI CCSGG 1 cut(s) 493
NdeII GATC 5 cut(s) 157, 385, 529, 718, 917
NgoMIV GCCGGC 1 cut(s) 233
NlaIII CATG 6 cut(s) 740, 896, 1003, 1008, 1161, 1194
NlaIV GGNNCC 2 cut(s) 225, 1203
NmuCI GTSAC 3 cut(s) 53, 346, 553
NruI TCGCGA 1 cut(s) 586
NspI RCATGY 1 cut(s) 1008
PaeI GCATGC 1 cut(s) 1008
PagI TCATGA 1 cut(s) 736
PdiI GCCGGC 1 cut(s) 235
PfeI GAWTC 2 cut(s) 276, 609
PkrI GCNGC 3 cut(s) 232, 1099, 1141
PleI GAGTC 1 cut(s) 689
PpsI GAGTC 1 cut(s) 689
PpuMI RGGWCCY 1 cut(s) 224
Psp5II RGGWCCY 1 cut(s) 224
Psp6I CCWGG 2 cut(s) 477, 933
PspEI GGTNACC 2 cut(s) 53, 553
PspFI CCCAGC 2 cut(s) 63, 520
PspGI CCWGG 2 cut(s) 477, 933
PspN4I GGNNCC 2 cut(s) 225, 1203
PspPI GGNCC 2 cut(s) 224, 926
PspPPI RGGWCCY 1 cut(s) 224
PstNI CAGNNNCTG 1 cut(s) 527
RruI TCGCGA 1 cut(s) 586
RsaI GTAC 4 cut(s) 823, 867, 891, 962
RsaNI GTAC 4 cut(s) 822, 866, 890, 961
RseI CAYNNNNRTG 2 cut(s) 479, 546
SaqAI TTAA 6 cut(s) 42, 288, 468, 512, 839, 1019
SatI GCNGC 3 cut(s) 231, 1098, 1140
Sau3AI GATC 5 cut(s) 157, 385, 529, 718, 917
Sau96I GGNCC 2 cut(s) 224, 926
ScaI AGTACT 1 cut(s) 867
SchI GAGTC 1 cut(s) 689
ScrFI CCNGG 3 cut(s) 479, 493, 935
SduI GDGCHC 1 cut(s) 189
SfaNI GCATC 4 cut(s) 533, 588, 898, 1151
SinI GGWCC 1 cut(s) 224
SmiMI CAYNNNNRTG 2 cut(s) 479, 546
SphI GCATGC 1 cut(s) 1008
SsiI CCGC 2 cut(s) 75, 1081
SspI AATATT 2 cut(s) 460, 581
SspMI CTAG 3 cut(s) 632, 722, 1222
StyD4I CCNGG 3 cut(s) 477, 491, 933
StyI CCWWGG 4 cut(s) 238, 271, 664, 1010
TaaI ACNGT 3 cut(s) 352, 409, 1210
TatI WGTACW 2 cut(s) 865, 960
TfiI GAWTC 2 cut(s) 276, 609
Tru1I TTAA 6 cut(s) 42, 288, 468, 512, 839, 1019
Tru9I TTAA 6 cut(s) 42, 288, 468, 512, 839, 1019
TscAI CASTG 1 cut(s) 768
TseFI GTSAC 3 cut(s) 53, 346, 553
TseI GCWGC 3 cut(s) 230, 1097, 1139
Tsp45I GTSAC 3 cut(s) 53, 346, 553
TspDTI ATGAA 7 cut(s) 463, 665, 725, 743, 909, 988, 1146
TspGWI ACGGA 2 cut(s) 142, 920
TspRI CASTG 1 cut(s) 768
VpaK11BI GGWCC 1 cut(s) 224
XapI RAATTY 3 cut(s) 203, 748, 796
XceI RCATGY 1 cut(s) 1008
XspI CTAG 3 cut(s) 632, 722, 1222
ZrmI AGTACT 1 cut(s) 867
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.