Rh3AG334600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0015348
Physical Location & Seq
Reverse (-)
48469910 .. 48474540
4631 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG334600.1

Sequence Viewer

Length: 963 bp
ATGATGAGGACCATAAGTGGATGGCGTCGCTTCCTCATCCTCGTCCCTCTTCTTTTCTTTCTTGCTCACTTCTTCTCCGTTGATCAATTGCATTACAACCCACGACCTGTGCCCAACAAACAAAGCAAATTCAACCACTTGGTTCTCGGACCTGCTGCCGGCCAAGGCTTGACCAATCGTCTCCAATGCCAACCCCAAGGAATCAAAGCTCTTAACAAAACCCATTTCTCCTCTGCCACTGCCCCTGCACTTGATAACATTCACTTTGTCACCGTCTTTACCCTATATAATTCCATCCGTCCCGATTATCAGTTATCAAACTTGGTTACAGTTGGCAATGCTTCTTACACTAAATTGGAGAGGTCTATGGCCATTCTCAATATTTTTGTTAACTTCATCCAGGTGGCAATGCCCCGGAGCGATGTAGTGATTTTAACTGACCCAGCATCTGATCTTTCAATGCACAGAAATGGGGTCACCATTTATCCAATTCAAGGTGAATATTCGCGAGACAAGTTGATGCTTCAAAGAATCAGGTCTTACATTGCCTTCCTAGAAACAAGGATGGAGGAGGTTTCTCAGAACCAAGGTCATATTCATCATTACATCTTCACCGACTCAGATATAGCTGTGGTTGATGATCTAGGACATATATTTCATGATTATCCAAATTTTCATCTGGCGCTGACCTTCCGGAACAACAAAGAACAACCTCTGAATTCAGGATTTATAGCAGTCAGGGGTACTCCTGCTGGCATTTTAAGGTGCGTCTGTCACATTATCTGGTTTTCTTTTTCATGTATGCTCGGCTGGGTTGCAAGTTGCAACAGAACAGATACAGAGAAAGTTTATCTGATATCCGATAGTAAAGGTAAGATGAAAAAAAAATATATATACAAAGAAAAAATAAATTGTGGAGTCAAGTTCAAGATGTTTTTTGTTTTGTTTTTGTCATCTATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

320

Amino Acids

36.65

Weight (kDa)

9.46

Isoelectric Point (pI)

48.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45320
fragaria_vesca FvH4_1g28100 FvH4_1g28100
malus_domestica MD00G1094900.v1.1
prunus_persica Prupe.6G155400_v2.0.a1
pyrus_communis pycom5153684g00430
rosa_chinensis RchiOBHm_Chr3g0497141
rosa_laevigata RLG00000022478
rosa_multiflora Rmu_sc0002893.1_g000029
rosa_roxburghii Rroxscaffold_6G00388380
rosa_rugosa Rorug03G0291300
rosa_samantha Rh3AG334600 Rh3BG371700 Rh3CG368400 Rh3DG369400
rosa_wichuraiana Rw3G029360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 160
AccII CGCG 1 cut(s) 508
AccIII TCCGGA 1 cut(s) 693
AcoI YGGCCR 2 cut(s) 160, 369
AcsI RAATTY 3 cut(s) 128, 670, 718
AcyI GRCGYC 1 cut(s) 25
AfaI GTAC 1 cut(s) 745
AfiI CCNNNNNNNGG 2 cut(s) 158, 494
AgsI TTSAA 5 cut(s) 133, 459, 494, 527, 928
AhdI GACNNNNNGTC 1 cut(s) 177
AjnI CCWGG 1 cut(s) 399
AjuI GAANNNNNNNTTGG 2 cut(s) 579, 611
AluBI AGCT 2 cut(s) 209, 629
AluI AGCT 2 cut(s) 209, 629
Alw26I GTCTC 2 cut(s) 185, 504
AlwNI CAGNNNCTG 1 cut(s) 449
Aor13HI TCCGGA 1 cut(s) 693
AoxI GGCC 2 cut(s) 160, 369
ApeKI GCWGC 1 cut(s) 155
ApoI RAATTY 3 cut(s) 128, 670, 718
AspLEI GCGC 1 cut(s) 685
AspS9I GGNCC 2 cut(s) 9, 149
AsuC2I CCSGG 1 cut(s) 415
AsuHPI GGTGA 4 cut(s) 262, 469, 509, 604
AvaII GGWCC 2 cut(s) 9, 149
BaeGI GKGCMC 1 cut(s) 114
BalI TGGCCA 1 cut(s) 371
BbvI GCAGC 1 cut(s) 142
BccI CCATC 3 cut(s) 15, 302, 559
BciT130I CCWGG 1 cut(s) 401
BclI TGATCA 1 cut(s) 82
BcnI CCSGG 1 cut(s) 415
BcoDI GTCTC 2 cut(s) 185, 504
BfaI CTAG 3 cut(s) 554, 644, 961
BfoI RGCGCY 1 cut(s) 686
BfuAI ACCTGC 1 cut(s) 160
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
Bme1390I CCNGG 2 cut(s) 401, 415
Bme18I GGWCC 2 cut(s) 9, 149
BmeRI GACNNNNNGTC 1 cut(s) 177
BmgT120I GGNCC 2 cut(s) 9, 149
BmrFI CCNGG 2 cut(s) 401, 415
BmsI GCATC 2 cut(s) 455, 510
BpuMI CCSGG 1 cut(s) 415
BsaHI GRCGYC 1 cut(s) 25
BsaJI CCNNGG 4 cut(s) 163, 196, 413, 586
BsaWI WCCGGW 1 cut(s) 693
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bsc4I CCNNNNNNNGG 2 cut(s) 158, 494
Bse118I RCCGGY 1 cut(s) 158
Bse3DI GCAATG 3 cut(s) 343, 414, 543
BseAI TCCGGA 1 cut(s) 693
BseBI CCWGG 1 cut(s) 401
BseDI CCNNGG 4 cut(s) 163, 196, 413, 586
BseGI GGATG 5 cut(s) 26, 36, 294, 396, 570
BseLI CCNNNNNNNGG 2 cut(s) 158, 494
BseMI GCAATG 3 cut(s) 343, 414, 543
BseMII CTCAG 2 cut(s) 593, 633
BseRI GAGGAG 2 cut(s) 220, 584
BseSI GKGCMC 1 cut(s) 114
BseXI GCAGC 1 cut(s) 142
BseYI CCCAGC 2 cut(s) 442, 810
BsgI GTGCAG 1 cut(s) 231
Bsh1236I CGCG 1 cut(s) 508
BshFI GGCC 2 cut(s) 162, 371
BsiSI CCGG 3 cut(s) 159, 415, 694
BslFI GGGAC 2 cut(s) 29, 285
BslI CCNNNNNNNGG 2 cut(s) 158, 494
BsmAI GTCTC 2 cut(s) 185, 504
BsmBI CGTCTC 1 cut(s) 185
BsmFI GGGAC 2 cut(s) 29, 285
BsnI GGCC 2 cut(s) 162, 371
Bsp1286I GDGCHC 1 cut(s) 114
Bsp13I TCCGGA 1 cut(s) 693
Bsp143I GATC 3 cut(s) 82, 451, 640
Bsp68I TCGCGA 1 cut(s) 508
BspANI GGCC 2 cut(s) 162, 371
BspCNI CTCAG 2 cut(s) 592, 632
BspEI TCCGGA 1 cut(s) 693
BspFNI CGCG 1 cut(s) 508
BspHI TCATGA 1 cut(s) 658
BspMI ACCTGC 1 cut(s) 160
BsrDI GCAATG 3 cut(s) 343, 414, 543
BsrFI RCCGGY 1 cut(s) 158
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 4 cut(s) 163, 196, 413, 586
BssMI GATC 3 cut(s) 82, 451, 640
BssNI GRCGYC 1 cut(s) 25
BssT1I CCWWGG 3 cut(s) 163, 196, 586
Bst2UI CCWGG 1 cut(s) 401
Bst4CI ACNGT 2 cut(s) 274, 331
Bst6I CTCTTC 1 cut(s) 54
BstACI GRCGYC 1 cut(s) 25
BstC8I GCNNGC 2 cut(s) 160, 754
BstDEI CTNAG 2 cut(s) 579, 619
BstEII GGTNACC 1 cut(s) 475
BstF5I GGATG 5 cut(s) 26, 36, 294, 396, 570
BstFNI CGCG 1 cut(s) 508
BstH2I RGCGCY 1 cut(s) 686
BstHHI GCGC 1 cut(s) 685
BstKTI GATC 3 cut(s) 85, 454, 643
BstMAI GTCTC 2 cut(s) 185, 504
BstMBI GATC 3 cut(s) 82, 451, 640
BstNI CCWGG 1 cut(s) 401
BstPI GGTNACC 1 cut(s) 475
BstSCI CCNGG 2 cut(s) 399, 413
BstSLI GKGCMC 1 cut(s) 114
BstUI CGCG 1 cut(s) 508
BstV1I GCAGC 1 cut(s) 142
BsuRI GGCC 2 cut(s) 162, 371
BtgZI GCGATG 1 cut(s) 435
BtsCI GGATG 5 cut(s) 26, 36, 294, 396, 570
BtsI GCAGTG 1 cut(s) 237
BtsIMutI CAGTG 1 cut(s) 237
BtuMI TCGCGA 1 cut(s) 508
BveI ACCTGC 1 cut(s) 160
Cac8I GCNNGC 2 cut(s) 160, 754
CaiI CAGNNNCTG 1 cut(s) 449
CciI TCATGA 1 cut(s) 658
CfoI GCGC 1 cut(s) 685
Cfr10I RCCGGY 1 cut(s) 158
Cfr13I GGNCC 2 cut(s) 9, 149
CseI GACGC 2 cut(s) 14, 757
Csp6I GTAC 1 cut(s) 744
CviAII CATG 2 cut(s) 659, 798
CviJI RGCY 6 cut(s) 162, 168, 209, 371, 629, 810
CviKI_1 RGCY 6 cut(s) 162, 168, 209, 371, 629, 810
CviQI GTAC 1 cut(s) 744
DdeI CTNAG 2 cut(s) 579, 619
DpnI GATC 3 cut(s) 84, 453, 642
DpnII GATC 3 cut(s) 82, 451, 640
DriI GACNNNNNGTC 1 cut(s) 177
EaeI YGGCCR 2 cut(s) 160, 369
Eam1104I CTCTTC 1 cut(s) 54
Eam1105I GACNNNNNGTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 54
Eco130I CCWWGG 3 cut(s) 163, 196, 586
Eco32I GATATC 1 cut(s) 858
Eco47I GGWCC 2 cut(s) 9, 149
Eco91I GGTNACC 1 cut(s) 475
EcoO65I GGTNACC 1 cut(s) 475
EcoRI GAATTC 1 cut(s) 718
EcoRII CCWGG 1 cut(s) 399
EcoRV GATATC 1 cut(s) 858
EcoT14I CCWWGG 3 cut(s) 163, 196, 586
ErhI CCWWGG 3 cut(s) 163, 196, 586
Esp3I CGTCTC 1 cut(s) 185
FaeI CATG 2 cut(s) 662, 801
FaqI GGGAC 2 cut(s) 29, 285
FatI CATG 2 cut(s) 658, 797
FbaI TGATCA 1 cut(s) 82
Fnu4HI GCNGC 1 cut(s) 156
FokI GGATG 5 cut(s) 23, 33, 281, 383, 577
Fsp4HI GCNGC 1 cut(s) 156
FspBI CTAG 3 cut(s) 554, 644, 961
GlaI GCGC 1 cut(s) 684
GluI GCNGC 1 cut(s) 156
GsaI CCCAGC 2 cut(s) 446, 814
HaeII RGCGCY 1 cut(s) 686
HaeIII GGCC 2 cut(s) 162, 371
HapII CCGG 3 cut(s) 159, 415, 694
HgaI GACGC 2 cut(s) 14, 757
HhaI GCGC 1 cut(s) 685
Hin1I GRCGYC 1 cut(s) 25
Hin1II CATG 2 cut(s) 662, 801
Hin6I GCGC 1 cut(s) 683
HinP1I GCGC 1 cut(s) 683
HincII GTYRAC 1 cut(s) 391
HindII GTYRAC 1 cut(s) 391
HinfI GANTC 4 cut(s) 201, 531, 617, 918
HpaI GTTAAC 1 cut(s) 391
HpaII CCGG 3 cut(s) 159, 415, 694
HphI GGTGA 4 cut(s) 262, 469, 509, 604
Hpy166II GTNNAC 1 cut(s) 391
Hpy188I TCNGA 7 cut(s) 149, 451, 582, 622, 717, 855, 862
Hpy188III TCNNGA 6 cut(s) 302, 507, 659, 694, 723, 928
Hpy8I GTNNAC 1 cut(s) 391
Hpy99I CGWCG 1 cut(s) 30
HpyAV CCTTC 2 cut(s) 559, 700
HpyCH4III ACNGT 2 cut(s) 274, 331
HpyCH4V TGCA 5 cut(s) 91, 248, 463, 818, 825
HpyF3I CTNAG 2 cut(s) 579, 619
Hsp92I GRCGYC 1 cut(s) 25
Hsp92II CATG 2 cut(s) 662, 801
HspAI GCGC 1 cut(s) 683
Kpn2I TCCGGA 1 cut(s) 693
KroI GCCGGC 1 cut(s) 158
KroNI GCCGGC 1 cut(s) 160
Ksp22I TGATCA 1 cut(s) 82
KspAI GTTAAC 1 cut(s) 391
Kzo9I GATC 3 cut(s) 82, 451, 640
LmnI GCTCC 1 cut(s) 417
Lsp1109I GCAGC 1 cut(s) 142
LweI GCATC 2 cut(s) 455, 510
MaeI CTAG 3 cut(s) 554, 644, 961
MaeIII GTNAC 4 cut(s) 268, 325, 475, 773
MalI GATC 3 cut(s) 84, 453, 642
MboI GATC 3 cut(s) 82, 451, 640
MboII GAAGA 3 cut(s) 41, 64, 601
MfeI CAATTG 1 cut(s) 86
MhlI GDGCHC 1 cut(s) 114
MlsI TGGCCA 1 cut(s) 371
MluCI AATT 8 cut(s) 86, 128, 289, 353, 489, 670, 718, 910
MluNI TGGCCA 1 cut(s) 371
MlyI GAGTC 2 cut(s) 611, 927
MnlI CCTC 8 cut(s) 44, 50, 57, 241, 354, 562, 565, 723
Mox20I TGGCCA 1 cut(s) 371
MroI TCCGGA 1 cut(s) 693
MroNI GCCGGC 1 cut(s) 158
MscI TGGCCA 1 cut(s) 371
MseI TTAA 4 cut(s) 213, 390, 434, 761
MslI CAYNNNNRTG 2 cut(s) 401, 468
Msp20I TGGCCA 1 cut(s) 371
MspI CCGG 3 cut(s) 159, 415, 694
MspR9I CCNGG 2 cut(s) 401, 415
MunI CAATTG 1 cut(s) 86
MvaI CCWGG 1 cut(s) 401
MvnI CGCG 1 cut(s) 508
NaeI GCCGGC 1 cut(s) 160
NciI CCSGG 1 cut(s) 415
NdeII GATC 3 cut(s) 82, 451, 640
NgoMIV GCCGGC 1 cut(s) 158
NlaIII CATG 2 cut(s) 662, 801
NmeAIII GCCGAG 1 cut(s) 786
NmuCI GTSAC 3 cut(s) 268, 475, 773
NruI TCGCGA 1 cut(s) 508
PagI TCATGA 1 cut(s) 658
PdiI GCCGGC 1 cut(s) 160
PfeI GAWTC 2 cut(s) 201, 531
PkrI GCNGC 1 cut(s) 157
PleI GAGTC 2 cut(s) 611, 926
PpsI GAGTC 2 cut(s) 611, 926
Psp6I CCWGG 1 cut(s) 399
PspEI GGTNACC 1 cut(s) 475
PspFI CCCAGC 2 cut(s) 442, 810
PspGI CCWGG 1 cut(s) 399
PspPI GGNCC 2 cut(s) 9, 149
PstNI CAGNNNCTG 1 cut(s) 449
RruI TCGCGA 1 cut(s) 508
RsaI GTAC 1 cut(s) 745
RsaNI GTAC 1 cut(s) 744
RseI CAYNNNNRTG 2 cut(s) 401, 468
SaqAI TTAA 4 cut(s) 213, 390, 434, 761
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 3 cut(s) 82, 451, 640
Sau96I GGNCC 2 cut(s) 9, 149
SchI GAGTC 2 cut(s) 611, 927
ScrFI CCNGG 2 cut(s) 401, 415
SduI GDGCHC 1 cut(s) 114
SfaNI GCATC 2 cut(s) 455, 510
SinI GGWCC 2 cut(s) 9, 149
SmiMI CAYNNNNRTG 2 cut(s) 401, 468
Sse9I AATT 8 cut(s) 86, 128, 289, 353, 489, 670, 718, 910
SspI AATATT 2 cut(s) 382, 503
SspMI CTAG 3 cut(s) 554, 644, 961
StyD4I CCNGG 2 cut(s) 399, 413
StyI CCWWGG 3 cut(s) 163, 196, 586
TaaI ACNGT 2 cut(s) 274, 331
TasI AATT 8 cut(s) 86, 128, 289, 353, 489, 670, 718, 910
TfiI GAWTC 2 cut(s) 201, 531
Tru1I TTAA 4 cut(s) 213, 390, 434, 761
Tru9I TTAA 4 cut(s) 213, 390, 434, 761
TscAI CASTG 1 cut(s) 244
TseFI GTSAC 3 cut(s) 268, 475, 773
TseI GCWGC 1 cut(s) 155
Tsp45I GTSAC 3 cut(s) 268, 475, 773
TspDTI ATGAA 6 cut(s) 385, 587, 647, 665, 786, 893
TspGWI ACGGA 2 cut(s) 67, 287
TspRI CASTG 1 cut(s) 244
VpaK11BI GGWCC 2 cut(s) 9, 149
XapI RAATTY 3 cut(s) 128, 670, 718
XspI CTAG 3 cut(s) 554, 644, 961
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.